BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0009.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B234.1 C3B234_BACMY ABC transporter MppX 392 e-107 C3AK70.1 C3AK70_BACMY ABC transporter MppX 389 e-106 C2WFD3.1 C2WFD3_BACCE ABC transporter MppX 374 e-102 C3BIT6.1 C3BIT6_9BACI ABC transporter MppX 313 1e-83 Q1IMV2.1 Q1IMV2_ACIBL ABC transporter, ATPase subunit 302 2e-80 >C3B234.1 C3B234_BACMY ABC transporter MppX Length = 296 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/288 (67%), Positives = 225/288 (78%) Query: 1 MELQIEQVSKSYGAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAW 60 MEL I+ V+K YG K AL+ +L LKPGV GLLGPNGAGKSTLMRMLATIE+PT G + W Sbjct: 1 MELIIDHVTKKYGEKIALNDCSLHLKPGVLGLLGPNGAGKSTLMRMLATIEQPTNGSVIW 60 Query: 61 NGVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXX 120 +G +I +P++LR ELGYLPQDFGVYPN+ +EFLEYIAAMKGLS S++ R Sbjct: 61 DGENIQKKPKLLRSELGYLPQDFGVYPNMNAVEFLEYIAAMKGLSMSSSKKRINELLEAL 120 Query: 121 XXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 NDRKRL+GG+SGGMRQRVGIAQ+LLNDP LLIVDEPTVGLDP ERI FRNLLSSLS Sbjct: 121 NLMNDRKRLLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSSLST 180 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 DRI+ILSTHIVTDIESIA IAL++KG ++ + PE L++ VE KVW ++P + L +Q Sbjct: 181 DRIVILSTHIVTDIESIATDIALLSKGNVLAHMRPEQLLKHVEGKVWEWVIPASELHHVQ 240 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVSSLG 288 KY VSSAI RSDGIH RIVS PSA A ++ ASLEDAYLY VSS G Sbjct: 241 KKYIVSSAIHRSDGIHARIVSSNAPSAKAHIIAASLEDAYLYYVSSKG 288 >C3AK70.1 C3AK70_BACMY ABC transporter MppX Length = 296 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/288 (66%), Positives = 224/288 (77%) Query: 1 MELQIEQVSKSYGAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAW 60 MEL I+ V+K YG K AL+ +L LK GV GLLGPNGAGKSTLMRMLATIE+PT G + W Sbjct: 1 MELIIDHVTKKYGEKIALNDCSLHLKSGVLGLLGPNGAGKSTLMRMLATIEQPTNGSVIW 60 Query: 61 NGVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXX 120 +G +I +P++LR ELGYLPQDFGVYPN+ +EFLEYIAAMKGLS S++ R Sbjct: 61 DGENIQKKPKLLRSELGYLPQDFGVYPNMNAVEFLEYIAAMKGLSMSSSKKRINELLEAL 120 Query: 121 XXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 NDRKRL+GG+SGGMRQRVGIAQ+LLNDP LLIVDEPTVGLDP ERI FRNLLSSLS Sbjct: 121 NLMNDRKRLLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSSLST 180 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 DRI+ILSTHIVTDIESIA IAL++KG ++ + PE L++ VE KVW ++P + L +Q Sbjct: 181 DRIVILSTHIVTDIESIATDIALLSKGNVLAHMRPEQLLKHVEGKVWEWVIPASELHHVQ 240 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVSSLG 288 KY VSSAI RSDGIH RIVS PSA A ++ ASLEDAYLY VSS G Sbjct: 241 KKYIVSSAIHRSDGIHARIVSSNAPSAKAHIIAASLEDAYLYYVSSKG 288 >C2WFD3.1 C2WFD3_BACCE ABC transporter MppX Length = 296 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/288 (63%), Positives = 218/288 (75%) Query: 1 MELQIEQVSKSYGAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAW 60 MEL IE V K YG K L +L +KPGV GLLGPNGAGKSTLMR+LATIE+PT G + W Sbjct: 1 MELIIEHVQKRYGGKVVLQDCSLHVKPGVLGLLGPNGAGKSTLMRILATIEQPTNGSVMW 60 Query: 61 NGVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXX 120 NG +I +P++LR +LGYLPQDFGVYPN+ +EFLEYIAAMKGL+ S++ R Sbjct: 61 NGENIQKKPKLLRSQLGYLPQDFGVYPNMNAVEFLEYIAAMKGLAMNSSKKRINELLEAL 120 Query: 121 XXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 NDRKRL+G +SGGMRQRVGIAQ+LLNDP LLIVDEPTVGLDP ERI FRNLLS+LS Sbjct: 121 NLTNDRKRLLGSYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSTLST 180 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 DRIIILSTHIVTDIES A IAL++KG ++ + PE L++ VE KVW ++P + L +Q Sbjct: 181 DRIIILSTHIVTDIESSATNIALLSKGNVLAHMKPEQLLKRVEGKVWEEVIPASELHHVQ 240 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVSSLG 288 KY VS A+ R DGIH RI+S PS A ++PASLEDAYLY VS+ G Sbjct: 241 KKYIVSGAVHRPDGIHARIISVHAPSKAARMIPASLEDAYLYYVSAKG 288 >C3BIT6.1 C3BIT6_9BACI ABC transporter MppX Length = 243 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 180/225 (80%) Query: 1 MELQIEQVSKSYGAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAW 60 MEL I+ V+K YG K AL+ +L LKPGV GLLGPNGAGKSTLMRMLATIE+PT G + W Sbjct: 1 MELIIDHVTKKYGEKIALNDCSLHLKPGVLGLLGPNGAGKSTLMRMLATIEQPTNGSVIW 60 Query: 61 NGVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXX 120 +G +I +P++LR ELGYLPQDFGVYPN+ +EFLEYIAAMKGLS S++ R Sbjct: 61 DGENIQKKPKLLRSELGYLPQDFGVYPNMNAVEFLEYIAAMKGLSMSSSKKRINELLEAL 120 Query: 121 XXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 NDRKRL+GG+SGGMRQRVGIAQ+LLNDP LLIVDEPTVGLDP ERI FRNLLSSLS Sbjct: 121 NLMNDRKRLLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSSLST 180 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQK 225 DR++ILSTHIVTDIESIA IAL++KG ++ + PE L++ VE K Sbjct: 181 DRMVILSTHIVTDIESIATDIALLSKGNVLAHMRPEQLLKHVEGK 225 >Q1IMV2.1 Q1IMV2_ACIBL ABC transporter, ATPase subunit Length = 297 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/291 (54%), Positives = 208/291 (71%), Gaps = 5/291 (1%) Query: 1 MELQIEQVSKSYG-AKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIA 59 M+L +E VSK YG AL +L+L PGV GLLGPNGAGKSTLM +LATI P+ GR+ Sbjct: 1 MKLTVENVSKRYGNGVQALRDFSLELGPGVLGLLGPNGAGKSTLMSILATITLPSAGRVL 60 Query: 60 WN----GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXX 115 W+ VD A P VLR LG+LPQDFGVYPNL+ LE+LEY+AA+KG+ ++A++R Sbjct: 61 WDDGKTSVDTAAHPNVLRNVLGFLPQDFGVYPNLSALEYLEYLAAIKGIDGKTAKSRIEE 120 Query: 116 XXXXXXXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLL 175 + + R +GG+SGGMRQRVGIAQ+LLNDP LLIVDEPT GLDP ER+ FRNLL Sbjct: 121 LLTLVNLQSAKTRKLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTAGLDPEERVRFRNLL 180 Query: 176 SSLSGDRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTAS 235 S LS DRI+ILSTHIV+D+E A IAL+A G+L+ +P+ L+ S++ +VW C++P Sbjct: 181 SELSHDRIVILSTHIVSDVELTADRIALVAAGQLITCQSPDQLLNSLDGRVWECVVPPDM 240 Query: 236 LPEMQAKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVSS 286 L + ++ + S ++R DG+H R+VSD +P NA PA LEDAYL+ V++ Sbjct: 241 LAQFKSHHACSGMVRRQDGVHVRVVSDEKPWHNAESEPAVLEDAYLHWVNA 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,595,347,582 Number of extensions: 62392499 Number of successful extensions: 503509 Number of sequences better than 1.0e-05: 75823 Number of HSP's gapped: 417168 Number of HSP's successfully gapped: 79469 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)