BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0008.p (531 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3AK71.1 C3AK71_BACMY Putative uncharacterized protein 379 e-103 C3B235.1 C3B235_BACMY Putative uncharacterized protein 376 e-102 C2WFD2.1 C2WFD2_BACCE Putative uncharacterized protein 373 e-101 C3BIT7.1 C3BIT7_9BACI Putative uncharacterized protein 372 e-101 Q643B1.1 Q643B1_STRHY Putative uncharacterized protein mppY 168 1e-39 >C3AK71.1 C3AK71_BACMY Putative uncharacterized protein Length = 506 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/507 (40%), Positives = 297/507 (58%), Gaps = 4/507 (0%) Query: 20 MRSYSFLFVIGISVFAGYACVPDAAAGYEIFYIGGVRGIYNSAWXXXXXXXXXXXXXWLF 79 MRSY FL VIG+++F GYACVP A+AGYEIFY+GGVRGIYNS W WL Sbjct: 1 MRSYPFLIVIGLTIFLGYACVPAASAGYEIFYLGGVRGIYNSNWLGGMGAMTSTLFIWLL 60 Query: 80 GFFMLRSQISGDARLKLGPLIASAPVRKIRYITAKAAANFXXXXXXXXXXXXXFMAMQLL 139 GF+MLRSQIS D +L +G LIA++P+ K +YI +K +NF FM MQ + Sbjct: 61 GFYMLRSQISDDQQLGVGQLIAASPISKFQYIFSKTISNFIVLVVIETVFIIAFMVMQFI 120 Query: 140 RGESSQLRLTDYMAPFFFVTFPSLFLLGSLTVLFDVFPGLKGVLGNVLFFCLWIAVGVVS 199 RGE +L Y+ P F++ FPSL LL + T FDVFPGLKGV+GN++FF LW+ + ++S Sbjct: 121 RGEDLSFQLGGYLYPLFYIVFPSLLLLAAFTTFFDVFPGLKGVVGNIVFFFLWVLLAIMS 180 Query: 200 IAAPSDWWDLFGVSGILNTMAHSAAEHYPALSSLEGGGSFGYYQTQGQIPTFVWQGAAWD 259 + + D+FG+ I + M H A Y L GGG FGY +G+I TF W G WD Sbjct: 181 FEMSNRYLDVFGLGIIRSDMIHDAMREYEFLRGTNGGG-FGYNPVEGKIKTFHWDGLTWD 239 Query: 260 SSLVPVRLVWIAVGIGGIILSALLFRRFEHLEGSAKAHPLAPGREKAPALPLAAMEHSGS 319 + ++ LVWI + + I L++L+F RF + G +K A+ HS S Sbjct: 240 AEILVTSLVWIGMAMLLIWLTSLVFNRFLTFTKVKEKVREVEGNKKTIAVN--EQNHS-S 296 Query: 320 LQLSPAVRVKGARLPGRVKAELKLMLKGMSLWWTXXXXXXXXXXXXVTANSVNSLLPFIM 379 L+ + K + +KAEL +MLKG ++WW + LP I+ Sbjct: 297 FILTSITKTKSISMFRLIKAELSIMLKGFTIWWYVIAIGLIAFGLICPVDISKGWLPIII 356 Query: 380 IWPLALWSQMGTRDQHYFTTGLTLSCSSPLAKWWTEWLSGVFITLLFSAGAIIRFIAEDQ 439 IWP+A+WSQM TR+++Y T + +S SPL K++ W+SGV + L+ S+G II+FI + Sbjct: 357 IWPIAIWSQMMTREKYYGTDQIIISSCSPLYKFFATWISGVIVGLIISSGLIIQFILIED 416 Query: 440 MPALLAWGTGLLFIPXXXXXXXXXXXSKKLFEVIYLLWWYMGPLNHVPSLDFLGVSDRNP 499 + L +W +G++FIP + KLFEV+Y+L WY+GP+NH+P +DFLG+S Sbjct: 417 IAFLFSWLSGIVFIPTLALVFGVWSRTHKLFEVVYILLWYLGPVNHLPYVDFLGISTSYA 476 Query: 500 VLYLMFTVVLFAAGSAVRLWQTGNLSI 526 +LY+ +++L + +L Q G L + Sbjct: 477 ILYMGLSILLLSMALIGQLQQMGRLRL 503 >C3B235.1 C3B235_BACMY Putative uncharacterized protein Length = 506 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/507 (40%), Positives = 296/507 (58%), Gaps = 4/507 (0%) Query: 20 MRSYSFLFVIGISVFAGYACVPDAAAGYEIFYIGGVRGIYNSAWXXXXXXXXXXXXXWLF 79 MRSY FL VIG+++F GYACVP A+AGYEIFY+GGVRGIYNS W WL Sbjct: 1 MRSYPFLIVIGLTIFLGYACVPAASAGYEIFYLGGVRGIYNSNWLGGMGAMTSTLFIWLL 60 Query: 80 GFFMLRSQISGDARLKLGPLIASAPVRKIRYITAKAAANFXXXXXXXXXXXXXFMAMQLL 139 GF+MLRSQIS D +L +G LIA++ + K +YI +K +NF FM MQ + Sbjct: 61 GFYMLRSQISDDQQLGVGQLIAASAISKFQYIFSKTISNFIVLVVIETVFIIAFMVMQFI 120 Query: 140 RGESSQLRLTDYMAPFFFVTFPSLFLLGSLTVLFDVFPGLKGVLGNVLFFCLWIAVGVVS 199 RGE +L Y+ P F++ FPSL LL + T FDVFPGLKGV+GN++FF LW+ + ++S Sbjct: 121 RGEDLSFQLGGYLYPLFYIVFPSLLLLAAFTTFFDVFPGLKGVVGNIVFFFLWVLLAIMS 180 Query: 200 IAAPSDWWDLFGVSGILNTMAHSAAEHYPALSSLEGGGSFGYYQTQGQIPTFVWQGAAWD 259 + + D+FG+ I + M H A Y L GGG FGY +G+I TF W G WD Sbjct: 181 FEMSNRYLDVFGLGIIRSDMIHDAMREYEFLRGTNGGG-FGYNPVEGKIKTFHWDGLTWD 239 Query: 260 SSLVPVRLVWIAVGIGGIILSALLFRRFEHLEGSAKAHPLAPGREKAPALPLAAMEHSGS 319 + ++ LVWI + + I L++L+F RF + G +K A+ HS S Sbjct: 240 AEILVTSLVWIGMAMLLIWLTSLVFNRFLTFTKVKEKVREVEGNKKTIAVN--EQNHS-S 296 Query: 320 LQLSPAVRVKGARLPGRVKAELKLMLKGMSLWWTXXXXXXXXXXXXVTANSVNSLLPFIM 379 L+ + K + +KAEL +MLKG ++WW + LP I+ Sbjct: 297 FILTSITKTKSISMFRLIKAELSIMLKGFTIWWYVIAIGLIAFGLICPVDISKGWLPIII 356 Query: 380 IWPLALWSQMGTRDQHYFTTGLTLSCSSPLAKWWTEWLSGVFITLLFSAGAIIRFIAEDQ 439 IWP+A+WSQM TR+++Y T + +S SPL K++ W+SGV + L+ S+G II+FI + Sbjct: 357 IWPIAIWSQMMTREKYYGTDQIIISSCSPLYKFFATWISGVIVGLIISSGLIIQFILIED 416 Query: 440 MPALLAWGTGLLFIPXXXXXXXXXXXSKKLFEVIYLLWWYMGPLNHVPSLDFLGVSDRNP 499 + L +W +G++FIP + KLFEV+Y+L WY+GP+NH+P +DFLG+S Sbjct: 417 ISFLFSWLSGIVFIPTLALVFGVWSRTHKLFEVVYILLWYLGPVNHLPYVDFLGISTSYA 476 Query: 500 VLYLMFTVVLFAAGSAVRLWQTGNLSI 526 +LY+ +++L + +L Q G L + Sbjct: 477 ILYMGLSILLLSMALIGQLQQMGRLRL 503 >C2WFD2.1 C2WFD2_BACCE Putative uncharacterized protein Length = 506 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/510 (38%), Positives = 294/510 (57%), Gaps = 4/510 (0%) Query: 20 MRSYSFLFVIGISVFAGYACVPDAAAGYEIFYIGGVRGIYNSAWXXXXXXXXXXXXXWLF 79 MRSYSFL VIG+++ GYACVP A+AGYE+FY+GGVRGIYNS W WL Sbjct: 1 MRSYSFLIVIGVTILFGYACVPAASAGYEVFYLGGVRGIYNSNWLGGMGAMTSALFIWLL 60 Query: 80 GFFMLRSQISGDARLKLGPLIASAPVRKIRYITAKAAANFXXXXXXXXXXXXXFMAMQLL 139 GF++LRSQIS + RL +G LIA++P+ RYI K +NF F+AMQ + Sbjct: 61 GFYVLRSQISDEQRLGVGQLIAASPISNFRYIFRKTISNFIVLVVIEMVLIVAFIAMQFI 120 Query: 140 RGESSQLRLTDYMAPFFFVTFPSLFLLGSLTVLFDVFPGLKGVLGNVLFFCLWIAVGVVS 199 RGE +L Y+ P ++ FPSLFLL +LT FDVFPGL GV+GN++FF LW+ + ++S Sbjct: 121 RGEDLSFQLGGYLYPLIYIVFPSLFLLAALTTFFDVFPGLNGVIGNIVFFFLWVLLAILS 180 Query: 200 IAAPSDWWDLFGVSGILNTMAHSAAEHYPALSSLEGGGSFGYYQTQGQIPTFVWQGAAWD 259 P+ + D+FG+ I + M A Y L GGG GY T+G I TF W G W+ Sbjct: 181 FEVPNRYLDVFGLGMIRSDMIQDAVSEYGFLKGNGGGGF-GYNPTEGTIQTFDWNGVDWN 239 Query: 260 SSLVPVRLVWIAVGIGGIILSALLFRRFEHLEGSAKAHPLAPGREKAPALPLAAMEHSGS 319 + V L W+ V + I +++L+F RF ++++ + +++ S Sbjct: 240 PGMFVVSLTWLGVALLFIWITSLIFNRFRICSKVKGKEEEFEKKQQSIIVNEQSLD---S 296 Query: 320 LQLSPAVRVKGARLPGRVKAELKLMLKGMSLWWTXXXXXXXXXXXXVTANSVNSLLPFIM 379 L+ + +G + +KAEL +MLKG ++WW + L I+ Sbjct: 297 FILTTIKKTRGINMFLLIKAELSIMLKGFTVWWYVIAAGLIAFGLICPVHIAREWLSIIL 356 Query: 380 IWPLALWSQMGTRDQHYFTTGLTLSCSSPLAKWWTEWLSGVFITLLFSAGAIIRFIAEDQ 439 IWP+A+WSQM TR++ Y T + +S SPL K++ W+SG+ + L+ S+G I++ I + Sbjct: 357 IWPIAIWSQMMTREKQYGTDQIIMSSCSPLYKFFATWISGIIVGLIISSGVIVQLIVMED 416 Query: 440 MPALLAWGTGLLFIPXXXXXXXXXXXSKKLFEVIYLLWWYMGPLNHVPSLDFLGVSDRNP 499 + +LL+W +G++FIP ++KLFEV+Y+ WY+GP+NH+P +DFL +S N Sbjct: 417 ISSLLSWLSGIVFIPTFALTLGVWSQTRKLFEVLYIFLWYLGPINHLPYVDFLAISTSNV 476 Query: 500 VLYLMFTVVLFAAGSAVRLWQTGNLSIRRR 529 VLY+ +++L +L + G+L + + Sbjct: 477 VLYITLSILLLCIALIGQLQRMGSLRLLYK 506 >C3BIT7.1 C3BIT7_9BACI Putative uncharacterized protein Length = 506 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/484 (40%), Positives = 286/484 (59%), Gaps = 4/484 (0%) Query: 20 MRSYSFLFVIGISVFAGYACVPDAAAGYEIFYIGGVRGIYNSAWXXXXXXXXXXXXXWLF 79 MRSY FL VIG+++F GYACVP A+AGYEIFY+GGVRG+YNS W WL Sbjct: 1 MRSYPFLIVIGLTIFLGYACVPAASAGYEIFYLGGVRGVYNSNWLGGMGAMTSTLFIWLL 60 Query: 80 GFFMLRSQISGDARLKLGPLIASAPVRKIRYITAKAAANFXXXXXXXXXXXXXFMAMQLL 139 GF+MLRSQIS D +L +G LIA++P+ K +YI +K +NF FM MQ + Sbjct: 61 GFYMLRSQISDDQQLGVGQLIAASPISKFQYIFSKTISNFIVLVVIETVFIIAFMVMQFI 120 Query: 140 RGESSQLRLTDYMAPFFFVTFPSLFLLGSLTVLFDVFPGLKGVLGNVLFFCLWIAVGVVS 199 RGE +L Y+ P F++ FPSL LL + T+ FDVFPGLKGV+GN++FF LW+ + ++S Sbjct: 121 RGEDLSFQLGGYLYPLFYIVFPSLLLLAAFTIFFDVFPGLKGVVGNIVFFFLWVLLAIMS 180 Query: 200 IAAPSDWWDLFGVSGILNTMAHSAAEHYPALSSLEGGGSFGYYQTQGQIPTFVWQGAAWD 259 + + D+FG+ I + M H A Y L GGG FGY +G+I TF W G WD Sbjct: 181 FEMSNRYLDVFGLGIIRSDMIHDAMREYEFLRETNGGG-FGYNPVEGKIKTFHWDGLTWD 239 Query: 260 SSLVPVRLVWIAVGIGGIILSALLFRRFEHLEGSAKAHPLAPGREKAPALPLAAMEHSGS 319 + ++ LVWI + + I L++L+F RF + G +K A+ ++ S Sbjct: 240 AEMLVTSLVWIGMAMLLIWLTSLVFNRFLTFTKVKEKVREVEGNKKTIAVN---EQNHNS 296 Query: 320 LQLSPAVRVKGARLPGRVKAELKLMLKGMSLWWTXXXXXXXXXXXXVTANSVNSLLPFIM 379 + + K + +KAEL +MLKG ++WW + LP I+ Sbjct: 297 FIFTSITKTKSISMFRLIKAELSIMLKGFTIWWYVIAIGLIAFGLICPVDISKGWLPIII 356 Query: 380 IWPLALWSQMGTRDQHYFTTGLTLSCSSPLAKWWTEWLSGVFITLLFSAGAIIRFIAEDQ 439 IWP+A+WSQM TR+++Y T + +S SPL K++ W+SGV + L+ S+G II+FI + Sbjct: 357 IWPIAIWSQMMTREKYYGTDQIIISSCSPLYKFFATWISGVIVGLIISSGLIIQFILIED 416 Query: 440 MPALLAWGTGLLFIPXXXXXXXXXXXSKKLFEVIYLLWWYMGPLNHVPSLDFLGVSDRNP 499 + L +W +G++FIP + KLFEV+Y+L WY+GP+NH+P +DFLG+S Sbjct: 417 ISFLFSWLSGIVFIPTLALVFGVWSRTHKLFEVMYILLWYLGPVNHLPYVDFLGISTSYA 476 Query: 500 VLYL 503 +LY+ Sbjct: 477 ILYM 480 >Q643B1.1 Q643B1_STRHY Putative uncharacterized protein mppY Length = 543 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 136/506 (26%), Positives = 220/506 (43%), Gaps = 29/506 (5%) Query: 11 LIKSNLVSQMRSYSFLFVIGISVFAGYACVPDAAAGYEIFYIGGVRGIYNSAWXXXXXXX 70 L ++ ++R +++ ++ +V GY VPD+ A + I IG RGIYNSA+ Sbjct: 5 LAVADFRDRVRRPAYVVILAAAVALGYVAVPDSDAKWMIMQIGDHRGIYNSAYVGMVTAL 64 Query: 71 XXXXXXWLFGFFMLRSQISGDARLKLGPLIASAPVRKIRYITAKAAANFXXXXXXXXXXX 130 L GF+++R+ I D ++G L+A+ P+R Y+ K +N Sbjct: 65 ASGLWITLGGFYIVRNSIERDRSTRVGQLLAATPLRTTAYMLGKFLSNLMLLSSMLVVLA 124 Query: 131 XXFMAMQLLRGESSQLRLTDYMAPFFFVTFPSLFLLGSLTVLFDVFPGLKGVLGNVLFFC 190 + MQL RGES + L PF + P + L +L +LF+ P L+ LGN+L+FC Sbjct: 125 LTALVMQLARGESHDIDLIALWQPFLLIALPLVALTAALALLFESLPLLRTGLGNILWFC 184 Query: 191 LWIAVGVVSIAAPSDWWDLFGVSGILNTMAHS-AAEHYPALSSLEGGGSFGYYQTQGQIP 249 +W+ V P D GV+ ++ +M A+H + G S G + Sbjct: 185 IWMVVSTAG-QGPGLPLDGIGVNSVVRSMYDDMVAQHI----DVTGAFSLGLTYLDKPLG 239 Query: 250 TFVWQGAAWDSSLVPVRLVWIAVGIGGIILSALLFRRFEHLE---GSAKAHPLAPGR--- 303 F W G + V R+ + + + +L AL F RF+ G + AP Sbjct: 240 LFTWDGFTPTAGYVLGRVTLLLIAVVIAMLPALWFGRFDPARTWLGQGRTPEQAPADGVV 299 Query: 304 ------EKAPALP-LAAMEHSGSLQLSPAVR--VKGARLPGRVK-----AELKLMLKGMS 349 E P P L+ H G+ P V ++ PG V E++++L+G+ Sbjct: 300 QPVFIDEVGPGTPPLSVQGHGGASPSRPTVATLLRTRPEPGAVTLRVWAGEVRILLQGVR 359 Query: 350 LWWTXXXXXXXXXXXXVTA--NSVNSLLPFIMIWPLALWSQMGTRDQHYFTTGLTLSCSS 407 WW + +LP IWP+ +WS++GT+ Y G+ + + Sbjct: 360 WWWWTGAAFLMIAALSSPGIHGIIRVMLPLSWIWPVLIWSRLGTQRHEYHVDGMLGAYPA 419 Query: 408 PLAKWWTEWLSGVFITLLFSAGAIIRFIAEDQMPALLAWGTGLLFIPXXXXXXXXXXXSK 467 + + EW +G+ IT + G +IR +A L W G LFIP + Sbjct: 420 VRRRVFAEWAAGLTITAVAGIGPLIRLVAAADWFGLAGWVGGALFIPSLALTLGTLSRTH 479 Query: 468 KLFEVIYLLWWYMGPLNHVPSLDFLG 493 +LF+ +YL WY N +P DF+G Sbjct: 480 RLFQAVYLPLWY-SVANGLPIFDFMG 504 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,882,554,311 Number of extensions: 113092669 Number of successful extensions: 331036 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 330981 Number of HSP's successfully gapped: 21 Length of query: 531 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 390 Effective length of database: 1,732,333,088 Effective search space: 675609904320 Effective search space used: 675609904320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 134 (56.2 bits)