BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0244.0007.p
         (204 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2WFD1.1 C2WFD1_BACCE Putative uncharacterized protein                 62   4e-08
C3B236.1 C3B236_BACMY Putative uncharacterized protein                 60   1e-07
C3AK72.1 C3AK72_BACMY Putative uncharacterized protein                 60   1e-07
C3BIT8.1 C3BIT8_9BACI Putative uncharacterized protein                 58   4e-07

>C2WFD1.1 C2WFD1_BACCE Putative uncharacterized protein
          Length = 251

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 18  VMLILAGCGDKAVE--KTASFEGSKVQQIEVKTDGQSIQVSRSKDSDVKLRM-KTEGELP 74
           +++ L  CG K  E   T  F+   + +I VKT G++I++  + + ++K+    TEG + 
Sbjct: 1   MIVSLVACGTKENELADTKQFDAEHINEIYVKTVGENIKLYSTVEKNIKIDTGDTEG-VK 59

Query: 75  AVLKAGVLTVSAEPASGFIHLKNETLYLELPEQSYESIRLATASGNITFEDGQAKTILLD 134
                  L +  E A   ++LK  T+ + LP++ Y+ I + T SG +  E+  +K + L 
Sbjct: 60  VKADGDKLEIIIENAPSIVNLKTATVQIYLPKKIYKKIDVETESGEVIGENMASKKLDLY 119

Query: 135 ADSGNITVTGFAGE-IDAATQSGTIH-SEVQASAEIQT 170
           +DS ++T+  + G+ ++  ++SG I   EV+ S +IQT
Sbjct: 120 SDSSDMTIKNYKGDQMEGVSESGGITLQEVEGSFDIQT 157


>C3B236.1 C3B236_BACMY Putative uncharacterized protein
          Length = 246

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 25  CGDKAVEKTAS--FEGSKVQQIEVKTDGQSIQVSRSKDSDVKLRMKTEGELPAVLKAGVL 82
           CG K  E   S  F    + +I +KT G++I++  + ++D+K+ +    ++        L
Sbjct: 3   CGTKESEAPVSKQFAVKNINEIYIKTVGENIKLHSTTETDIKVDIGEIKDVKVKENGEKL 62

Query: 83  TVSAEPASGFIHLKNETLYLELPEQSYESIRLATASGNITFEDGQAKTILLDADSGNITV 142
            V  E +S  ++LK  T+++ LPE++YE I + T SG +  E+  ++ + L +DS ++T+
Sbjct: 63  EVITEHSSSIVNLKTATVHIYLPEKTYEKIDVKTESGEVIGENIASEQLNLYSDSSDMTI 122

Query: 143 TGFAG-EIDAATQSGTIHSE-VQASAEIQT 170
             + G  I   ++SG I  + V+ S +IQ 
Sbjct: 123 KEYKGNNIKGVSKSGGITLQGVEGSFDIQN 152


>C3AK72.1 C3AK72_BACMY Putative uncharacterized protein
          Length = 246

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 25  CGDKAVEKTAS--FEGSKVQQIEVKTDGQSIQVSRSKDSDVKLRMKTEGELPAVLKAGVL 82
           CG K  E   S  F    + +I +KT G++I++  + ++D+K+ +    ++        L
Sbjct: 3   CGTKESEAPVSKQFAVKNINEIYIKTVGENIKLHSTTETDIKVDIGEIKDVKVKENGEKL 62

Query: 83  TVSAEPASGFIHLKNETLYLELPEQSYESIRLATASGNITFEDGQAKTILLDADSGNITV 142
            V  E +S  ++LK  T+++ LPE++YE I + T SG +  E+  ++ + L +DS ++T+
Sbjct: 63  EVITEHSSSIVNLKTATVHIYLPEKTYEKIDVKTESGEVIGENIASEQLNLYSDSSDMTI 122

Query: 143 TGFAG-EIDAATQSGTIHSE-VQASAEIQT 170
             + G  I   ++SG I  + V+ S +IQ 
Sbjct: 123 KEYKGNNIKGVSKSGGITLQGVEGSFDIQN 152


>C3BIT8.1 C3BIT8_9BACI Putative uncharacterized protein
          Length = 251

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 25  CGDKAVEKTAS--FEGSKVQQIEVKTDGQSIQVSRSKDSDVKLRMKTEGELPAVLKAGVL 82
           CG K  E   S  F    + +I +KT G++I++  + ++D+K+ +    ++        L
Sbjct: 3   CGTKESEAPVSKQFAVKNINEIYIKTVGENIKLHSTTETDIKVDIGEIKDVKVKENGEKL 62

Query: 83  TVSAEPASGFIHLKNETLYLELPEQSYESIRLATASGNITFEDGQAKTILLDADSGNITV 142
            V  E +S  ++LK  T+++ LPE++Y+ I + T SG +  E+  ++ + L +DS ++T+
Sbjct: 63  EVITEHSSSIVNLKTATVHIYLPEKTYKKIDVKTESGEVIGENIASEQLNLYSDSSDMTI 122

Query: 143 TGFAG-EIDAATQSGTIHSE-VQASAEIQT 170
             + G  I   ++SG I  + V+ S +IQ 
Sbjct: 123 KEYKGNNIKGVSKSGGITLQGVEGSFDIQN 152


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.126    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 965,718,883
Number of extensions: 32861392
Number of successful extensions: 81525
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 81561
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 75
Effective length of database: 1,845,385,268
Effective search space: 138403895100
Effective search space used: 138403895100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)