BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0006.p (379 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLA7.1 B3KLA7_9BACI Putative RNA methylase 616 e-174 B1D7G3.1 B1D7G3_9BACL Putative RNA methylase 533 e-149 Q67LQ9.1 Q67LQ9_SYMTH Putative uncharacterized protein 447 e-123 A4J8N9.1 A4J8N9_DESRM Putative RNA methylase 441 e-122 A6TWQ9.1 A6TWQ9_ALKMQ Putative RNA methylase 436 e-120 >B3KLA7.1 B3KLA7_9BACI Putative RNA methylase Length = 382 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 291/376 (77%), Positives = 325/376 (86%), Gaps = 1/376 (0%) Query: 3 KLTLIATAPMGLEAVVARELNELGY-ETAIENGRVLFSGDYIDICRCNLWLRTSDRVLVK 61 +L LIATAPMGLEAVVAREL ELGY + +ENGRV FSGD IDICRCNLWLRTSDR+LVK Sbjct: 3 RLQLIATAPMGLEAVVARELKELGYADMEVENGRVTFSGDLIDICRCNLWLRTSDRILVK 62 Query: 62 MGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEKL 121 MG+F A TFDELFEG KA+ W++WIP +GEFPVEGRSHKSQL+SVPACQGIVKKAIVEKL Sbjct: 63 MGEFTALTFDELFEGTKALPWEEWIPADGEFPVEGRSHKSQLSSVPACQGIVKKAIVEKL 122 Query: 122 KLSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAAAL 181 KLS+RTEWFPENGPRYVVE+ LL D A++TLDTTGPALHKRGYR+ TEAPLKETMA+AL Sbjct: 123 KLSHRTEWFPENGPRYVVEISLLKDRAILTLDTTGPALHKRGYRKLVTEAPLKETMASAL 182 Query: 182 IQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAREE 241 +QLSRW HRPLYDPCCGSGT+LIEAAM+AWNIAPGLRRSFPSEHW I LWE+AREE Sbjct: 183 LQLSRWGPHRPLYDPCCGSGTILIEAAMMAWNIAPGLRRSFPSEHWDIIGDSLWEDAREE 242 Query: 242 AFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCIIT 301 AFDAV+DD PL + G+DIDP KSAGLAGEI F+ + AAKA P GE+GC+IT Sbjct: 243 AFDAVKDDIPLHIAGSDIDPKAIEVAKAAAKSAGLAGEIDFRVLPAAKAIPDGEFGCMIT 302 Query: 302 NPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYNGR 361 NPPYGER+S +EVE+L RQFG +M LPTWSFFAISP K+FE Y+GRKADKRRKL+NGR Sbjct: 303 NPPYGERLSEKEEVERLIRQFGSVMHSLPTWSFFAISPTKQFEHYFGRKADKRRKLFNGR 362 Query: 362 IECQYYQYLGPLPPRK 377 IECQYYQYLGPLPPR Sbjct: 363 IECQYYQYLGPLPPRN 378 >B1D7G3.1 B1D7G3_9BACL Putative RNA methylase Length = 378 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 247/378 (65%), Positives = 297/378 (78%), Gaps = 1/378 (0%) Query: 1 LGKLTLIATAPMGLEAVVARELNELGY-ETAIENGRVLFSGDYIDICRCNLWLRTSDRVL 59 + + LIATAPMGLEAVVAREL LGY + +ENGRV F+G IDICR NLWLR++ R+L Sbjct: 1 MTTINLIATAPMGLEAVVARELKNLGYTDLQVENGRVRFTGQPIDICRTNLWLRSAGRIL 60 Query: 60 VKMGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVE 119 V MG+F A TF+ELFEG KA++W +WIPE+GEFPV GRS KSQLTSVPACQ IVKKA+VE Sbjct: 61 VNMGEFKAATFEELFEGTKALDWPEWIPEDGEFPVNGRSQKSQLTSVPACQSIVKKAVVE 120 Query: 120 KLKLSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAA 179 K+K Y TEWF E+G RYV+EV L+ND A++TLDTTG LH+RGYR+ +TEAP++ETMAA Sbjct: 121 KMKDRYGTEWFHEDGGRYVIEVTLMNDMAMLTLDTTGAGLHQRGYRKVSTEAPIRETMAA 180 Query: 180 ALIQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAR 239 AL+ LSRW RPLYDP CGSGT+L+EAAM+AWNIAPGLRRSF +E WP +P LW+EAR Sbjct: 181 ALVDLSRWTPERPLYDPFCGSGTILVEAAMMAWNIAPGLRRSFDAEGWPLVPHELWDEAR 240 Query: 240 EEAFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCI 299 EEAFDAV+DD PLQ+ G+DIDP K AG EI + + AK +P+G+YG I Sbjct: 241 EEAFDAVKDDIPLQIAGSDIDPYAIEIAEAAVKKAGFGKEIKLKVMPVAKIKPEGDYGVI 300 Query: 300 ITNPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYN 359 ITNPPYGER+ +DK+ E QFG LYLPTWSFFAISP E Y+G+ ADK+RKL+N Sbjct: 301 ITNPPYGERLGDDKDAEMALMQFGRSALYLPTWSFFAISPSASVEHYFGKPADKKRKLFN 360 Query: 360 GRIECQYYQYLGPLPPRK 377 GRI+C YYQ+ GPLPPRK Sbjct: 361 GRIQCNYYQFFGPLPPRK 378 >Q67LQ9.1 Q67LQ9_SYMTH Putative uncharacterized protein Length = 415 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 216/371 (58%), Positives = 269/371 (72%), Gaps = 1/371 (0%) Query: 3 KLTLIATAPMGLEAVVARELNELGYETAI-ENGRVLFSGDYIDICRCNLWLRTSDRVLVK 61 +LTLIATA MGLEAVVAREL LGY+ I ENGRV F GD ICR NLWLRT+DRVLV+ Sbjct: 6 QLTLIATAAMGLEAVVARELKGLGYDQQIVENGRVRFRGDARAICRANLWLRTADRVLVE 65 Query: 62 MGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEKL 121 M FPA TF+ELF+GV+A+ W++WIP G F V GRSH+SQL+SVPACQ + +KA+VE+L Sbjct: 66 MASFPATTFEELFQGVRAVPWEEWIPAEGRFIVNGRSHQSQLSSVPACQKVAEKAVVERL 125 Query: 122 KLSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAAAL 181 + Y EWFP++G RY +EV LL D A +TLDTTGP LHKRGYR+ TEAP+KET+AAA+ Sbjct: 126 RQRYPLEWFPKSGARYSIEVSLLKDVATVTLDTTGPGLHKRGYRKLVTEAPIKETLAAAM 185 Query: 182 IQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAREE 241 + LSRW+ RPL DPCCGSGT+ IEAA+I N+APGL RSF +E W IP RLW+EAREE Sbjct: 186 VLLSRWHPDRPLLDPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWDEAREE 245 Query: 242 AFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCIIT 301 FD D PL + G+DIDP ++AGL+ + + + YG +IT Sbjct: 246 GFDLADYDRPLDIRGSDIDPGALELAAHHLRAAGLSRSVRLERKPLQEIGRDAPYGYLIT 305 Query: 302 NPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYNGR 361 NPPYGER+ + VE L R G ++ L WS F I+P+K FE+++GR+AD++RKLYNGR Sbjct: 306 NPPYGERMGEREAVEALYRDIGRLVRRLQDWSAFVITPHKGFERHFGRRADRKRKLYNGR 365 Query: 362 IECQYYQYLGP 372 IEC YQY GP Sbjct: 366 IECDLYQYEGP 376 >A4J8N9.1 A4J8N9_DESRM Putative RNA methylase Length = 390 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/374 (55%), Positives = 268/374 (71%) Query: 3 KLTLIATAPMGLEAVVARELNELGYETAIENGRVLFSGDYIDICRCNLWLRTSDRVLVKM 62 K+ LIATA GLE+VVA E+ ++GY+ +ENGRV F GD + ICR NLWLR++DRVL+KM Sbjct: 4 KIELIATATFGLESVVAHEVKKMGYDVMVENGRVTFFGDEMAICRTNLWLRSADRVLIKM 63 Query: 63 GQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEKLK 122 G+F A +F+ELF+ KA+ W DW+P + FPVEG+S KS+L SVP CQ IVKKAIVEK+K Sbjct: 64 GEFKATSFEELFQQTKALPWPDWLPVDATFPVEGKSIKSKLHSVPDCQAIVKKAIVEKMK 123 Query: 123 LSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAAALI 182 +Y+ EWF E GPRY +EV LL D A IT+DT+G LHKRGYR+ A +APLKET+AA L+ Sbjct: 124 QTYKKEWFEETGPRYTIEVALLKDIATITIDTSGVGLHKRGYRKLAAQAPLKETLAAGLL 183 Query: 183 QLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAREEA 242 ++RW RPL DP CGSGT+ IEAA+I NIAPG+ R+F +E WP IP++LW AR+EA Sbjct: 184 SIARWYPDRPLLDPFCGSGTIPIEAALIGHNIAPGIGRNFVAEEWPVIPKKLWRNARKEA 243 Query: 243 FDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCIITN 302 ++ D L++ GTDID K A + I FQ + A R + +YG IITN Sbjct: 244 LESEIHDNKLRIYGTDIDDKVLSLARYHAKQANVEDSIHFQRVPVANVRTKQKYGFIITN 303 Query: 303 PPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYNGRI 362 PPYG+R+ ++V+KL + G+ L WS F IS ++ FEQY+G+KADK+RKLYNGR+ Sbjct: 304 PPYGQRLGEIQQVKKLYEELGQTYKTLDNWSCFVISSFEHFEQYFGKKADKKRKLYNGRV 363 Query: 363 ECQYYQYLGPLPPR 376 EC YYQY GP P R Sbjct: 364 ECNYYQYPGPRPLR 377 >A6TWQ9.1 A6TWQ9_ALKMQ Putative RNA methylase Length = 379 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/375 (56%), Positives = 265/375 (70%), Gaps = 1/375 (0%) Query: 3 KLTLIATAPMGLEAVVARELNELGYETA-IENGRVLFSGDYIDICRCNLWLRTSDRVLVK 61 K+ LIATA GLEAVVARE+ +LGYE +ENGRV F+ D ICR NLWLRT+DRVL+K Sbjct: 4 KVELIATATFGLEAVVAREVKKLGYEDVEVENGRVTFTADESAICRTNLWLRTADRVLIK 63 Query: 62 MGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEKL 121 +GQF A TFDELFE KA+ W +WIP++G FPV+G+S KSQL SVP CQ IVKKA+VEKL Sbjct: 64 IGQFKATTFDELFEKTKALPWHEWIPKDGIFPVDGKSIKSQLASVPNCQSIVKKAVVEKL 123 Query: 122 KLSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAAAL 181 K Y TEWF E Y +EV +L D +T+DTTG LHKRGYR+ A +APLKET+AAAL Sbjct: 124 KSKYHTEWFEETKGTYRIEVGILKDVVTLTMDTTGAGLHKRGYRKLANQAPLKETLAAAL 183 Query: 182 IQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAREE 241 IQLS WN R L DP CGSGT+ IEAA+I NIAPG+ R+F SE WP + + LW EAR+E Sbjct: 184 IQLSFWNPDRVLIDPFCGSGTIPIEAALIGRNIAPGMNRTFVSEEWPSLSKELWREARKE 243 Query: 242 AFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCIIT 301 A D + L++ G+D+D K A L G+I Q + + R + +YGC ++ Sbjct: 244 AHDLADYERTLRIYGSDVDGDVLSLARYHVKEAMLEGDIHLQKLDVKELRSRFDYGCTLS 303 Query: 302 NPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYNGR 361 NPPYGER+ +EVE L G+ + TWS + ++ + +FE ++G+KAD+RRKLYNGR Sbjct: 304 NPPYGERLGEREEVEALYEVMGDTFGQMETWSHYILTAHDKFETHFGKKADRRRKLYNGR 363 Query: 362 IECQYYQYLGPLPPR 376 IECQYYQY GP PPR Sbjct: 364 IECQYYQYQGPRPPR 378 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,358,308,557 Number of extensions: 97157645 Number of successful extensions: 201518 Number of sequences better than 1.0e-05: 1034 Number of HSP's gapped: 198769 Number of HSP's successfully gapped: 1034 Length of query: 379 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 242 Effective length of database: 1,770,017,148 Effective search space: 428344149816 Effective search space used: 428344149816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)