BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0009.p (330 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIM9.1 B3KIM9_9BACI S-layer domain protein 189 4e-46 B1DKJ4.1 B1DKJ4_9BACL S-layer domain protein 184 1e-44 A9U7I9.1 A9U7I9_PHYPA Predicted protein 152 4e-35 A6EC66.1 A6EC66_9SPHI Putative uncharacterized protein 144 8e-33 B1DDB7.1 B1DDB7_9BACL S-layer domain protein 130 2e-28 >B3KIM9.1 B3KIM9_9BACI S-layer domain protein Length = 308 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 156/283 (55%), Gaps = 21/283 (7%) Query: 35 DIKGDPAESKINALHNKGVVNGVTTDRFAPKSKVTFAQGIQFIVN--GLQLSPKAXXXXX 92 DI+ + + L +KG++ G++ D+FAP +T AQ +Q IVN GL++ P Sbjct: 28 DIQEEKPLQMVKELQSKGIIQGISADKFAPSKTITTAQAVQMIVNAAGLEVQPNFTGRS- 86 Query: 93 XXXXXXYFDKVKDKAWYASAFLIAKQNGLTLDKSVDPNAAMTRIQFAHLLTQALQSKGNF 152 FD V AW+A A IA QNGL++ + N +TR FA LL++A+Q GN+ Sbjct: 87 -------FDSVPKDAWFAEAVNIAAQNGLSVSADMKWNEPITREGFATLLSEAIQKTGNY 139 Query: 153 PVTLMYADISDGSKLSNAEMNSLQILVNTHLVTLEKNNTFRPNDAVTRAEAAVWIYDAAE 212 PV +MY ++D + ++Q L+ T + L+ N+ F P +++R EAA +Y++ Sbjct: 140 PVIMMYLHVADEDLMKEESRGAVQFLLLTKIAKLDANDKFHPTKSLSRIEAAELVYNSIR 199 Query: 213 F---AQTVITPEVTPPDEGTAAPAQLYEGSITLEKAGQGVNKVTLTVNDLPNPGYGLAIN 269 F Q + PE PD+ + S ++ K + NKVT+T DLPNPGYG+ I Sbjct: 200 FIEEHQKNMIPE--EPDQSEP------DVSTSVVKVDESQNKVTVTKEDLPNPGYGIKIT 251 Query: 270 RIEFGKDKTAVIYFSVTKPDPGKMYPMVITKGTAVTYLPEGYT 312 +++ D AVIYF V +PDP KMYP VI+K + +P YT Sbjct: 252 SVDYVSDTEAVIYFKVVQPDPDKMYPQVISKSSDDVLVPSKYT 294 >B1DKJ4.1 B1DKJ4_9BACL S-layer domain protein Length = 317 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 8/277 (2%) Query: 35 DIKGDPAESKINALHNKGVVNGVTTDRFAPKSKVTFAQGIQFIVNGLQLSPKAXXXXXXX 94 D DP +SKI +L +GV+ G ++F K+T+A GI IV L+ Sbjct: 29 DTSKDPNKSKIESLEKQGVIKGEKGNKFNSNGKLTYAAGISMIVKAFDLNIDNIRFIKKP 88 Query: 95 XXXXYFDKVKDKAWYASAFLIAKQNGLTLDKSVDPNAAMTRIQFAHLLTQALQSKGNFPV 154 Y+ +K+ +WYA AF+IA+ NGL + K+V N MTR QFAH L +A+ KG+F Sbjct: 89 EVADYYPNLKNGSWYADAFIIAQYNGLEVPKNVKANDEMTREQFAHHLFKAITKKGDFAF 148 Query: 155 TLMYADISDGSKLSNAEMNSLQILVNTHLVTLEKNNTFRPNDAVTRAEAAVWIYDAAEFA 214 +Y ++D ++ MNS+Q L+ + + TL+K N F P +TR AA W+YD EF Sbjct: 149 IELYMTVNDEKDVNKDYMNSIQKLLISKIATLDKKNNFYPKQKITRGVAAGWLYDGLEFV 208 Query: 215 QTVITPEVTPPDEGTAAPAQLYEGSITLEKAGQGVNKVTLTVNDLPNPGYGLAINRIEFG 274 + TP AP + + +T+ + +NKVT++ P+PGYGL + I F Sbjct: 209 KK------TPTIPAEPAPQPIQDLKLTVTSVNKDINKVTVS-GQAPHPGYGLRVTSISF- 260 Query: 275 KDKTAVIYFSVTKPDPGKMYPMVITKGTAVTYLPEGY 311 D A+I +PDP KMYP VIT+ +A TY+ Y Sbjct: 261 VDGQAIIKVETVQPDPNKMYPQVITEVSATTYVDAAY 297 >A9U7I9.1 A9U7I9_PHYPA Predicted protein Length = 375 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/327 (32%), Positives = 153/327 (46%), Gaps = 27/327 (8%) Query: 2 NKYSFQMSAKKITI---ACGILXXXXXXXXXXXXXXDIKGDPAESKINALHNKGVVNGVT 58 ++ S +MS + + I AC +L DI DP + I L GVV G Sbjct: 40 HENSLRMSKRPLLIGGLACALLIGCVPIVSAFT---DIDHDPHAAAIRQLEQSGVVGGSG 96 Query: 59 TDRFAPKSKVTFAQGIQFIVNGLQLSPKAXXXXXXXXXXXYFDKVKDKAWYASAFLIAKQ 118 + +F P+ K+++A+G+ +V + YF + DKAWYAS+FL A Sbjct: 97 SGQFKPQEKLSYAEGVSLVVKAFGFNLDRLRFIREPLASQYFPGMNDKAWYASSFLAAAA 156 Query: 119 NGLTLDKSVDPNAAMTRIQFAHLLTQALQSKGNFPVTLMYADISDGSKLSNAEMNSLQIL 178 NG+ K + P A TR QFA L+ Q + G++ T D ++ S+Q+L Sbjct: 157 NGVQFPKDMSPGATATREQFADLVAQGIHHSGDYSFTQQAVVFKDEGAVAQPYRASVQML 216 Query: 179 VNTHLVTLEKNNTFRPNDAVTRAEAAVWIYDAAEFAQTV---------ITPEVTPPDEGT 229 + + L++ + F+P AVTR+EAA WI F + P V+P Sbjct: 217 LKLGIAKLDEGDEFKPKTAVTRSEAAAWINGGVTFVDKMNGDNGSVQNPAPSVSP----- 271 Query: 230 AAPAQLYEGSITLEKAGQGVNKVTLTVNDLPNPGYGLAINRIEFGKDKTAVIYFSVTKPD 289 L E ++T K V +V +T PNPGY L I IEF K A+I V P Sbjct: 272 -----LQEVALTASKLSDKVQEVKVTAQ-APNPGYSLVITGIEFSGSK-AIIAVEVVPPK 324 Query: 290 PGKMYPMVITKGTAVTYLPEGYTATAK 316 PG+M P VIT+ +AVTY+ YTA + Sbjct: 325 PGQMNPQVITEVSAVTYIGSTYTAELR 351 >A6EC66.1 A6EC66_9SPHI Putative uncharacterized protein Length = 296 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 10/247 (4%) Query: 65 KSKVTFAQGIQFIVNGLQLSPKAXXXXXXXXXXXYFDKVKDKAWYASAFLIAKQNGLTLD 124 +SK+++ +G+ IV GL L+ YF + +KA YA + +IA NG+ L Sbjct: 52 QSKLSYGRGLDMIVMGLGLNIDNIRFVKEPKATDYFIQANNKAAYAQSLIIAANNGIQLK 111 Query: 125 KSVDPNAAMTRIQFAHLLTQALQSKGNFPVTLMYADISDGSKLSNAEMNSLQILVNTHLV 184 +S++P AMTR QFA L QA+Q G + +M+ +SD S S + ++Q L+ +++ Sbjct: 112 RSINPEWAMTREQFALALHQAIQGTGQYMTNMMWIIVSDESSFSEGSLAAVQNLIKFNVI 171 Query: 185 TLEKNNTFRPNDAVTRAEAAVWIYDAAEFAQTVITPEVTPPDEGTAAPAQLYEGSITLEK 244 TL+ N FRP +T AEA + AA F Q + APA E + T Sbjct: 172 TLQ-NGKFRPKSYITTAEANAMVKKAATFIQR---------SKANQAPAADAETTFTSTP 221 Query: 245 AGQGVNKVTLTVNDLPNPGYGLAINRIEFGKDKTAVIYFSVTKPDPGKMYPMVITKGTAV 304 + VN+V L+ PN GY ++I++I F ++K AVIY+ V P+ G Y VI + TA Sbjct: 222 VNEAVNRVVLSRGSKPNSGYQISISKIIFSENKEAVIYYVVKDPEAGNSYMQVIAEPTAE 281 Query: 305 TYLPEGY 311 T++ Y Sbjct: 282 TFISSDY 288 >B1DDB7.1 B1DDB7_9BACL S-layer domain protein Length = 237 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 2/205 (0%) Query: 35 DIKGDPAESKINALHNKGVVNGVTTDRFAPKSKVTFAQGIQFIVNGLQLSPKAXXXXXXX 94 DI G + ++I AL G+V GV++ F P+ +T AQGI+ IV +QLS A Sbjct: 33 DIAGTSSRAQIEALQELGIVKGVSSSEFHPEENLTGAQGIELIVRTMQLSLAAIDFNQTP 92 Query: 95 XXXXYFDKVKDKAWYASAFLIAKQNGLTLDKSVDPNAAMTRIQFAHLLTQALQSKGNFPV 154 +F VK+ AWYA +F+IA NGL L +DPN +TR QFAH L QAL+ G +P+ Sbjct: 93 TADGFFTNVKNDAWYAESFVIAHYNGLDLPADIDPNKPLTREQFAHYLVQALEKTGQYPL 152 Query: 155 TLMYADISDGSKLSNAEMNSLQILVNTHLVTLEKNNTFRPNDAVTRAEAAVWIYDAAEFA 214 MY +I D ++ ++Q + +V L+++ F P V RAEAA ++ A EF Sbjct: 153 IKMYINIQDEKDITVDYQGTIQRALLYKIVALDEDGNFHPQQIVNRAEAAAILFAAHEFV 212 Query: 215 QTVI-TPEVTPPDE-GTAAPAQLYE 237 +T E P+E +APAQ E Sbjct: 213 ETHKDNGEAGAPEEPAASAPAQALE 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,683,238,469 Number of extensions: 63947149 Number of successful extensions: 155426 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 155721 Number of HSP's successfully gapped: 68 Length of query: 330 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 194 Effective length of database: 1,779,438,163 Effective search space: 345211003622 Effective search space used: 345211003622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)