BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0008.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IK55.1 A4IK55_GEOTN Putative uncharacterized protein 184 7e-45 B4BQQ6.1 B4BQQ6_9BACI Putative uncharacterized protein 184 7e-45 B7GFY2.1 B7GFY2_ANOFW Uncharacterized conserved protein 172 3e-41 B4BB91.1 B4BB91_CLOTM Spore germination protein-like protein 162 4e-38 A3DIG6.1 A3DIG6_CLOTH Spore germination protein-like protein 161 4e-38 >A4IK55.1 A4IK55_GEOTN Putative uncharacterized protein Length = 266 Score = 184 bits (467), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 88/164 (53%), Positives = 112/164 (68%), Gaps = 2/164 (1%) Query: 97 AMEAATTVLRALSRGNMETLASWAHPDKGVRFSPYAHVDTATDLVFTRDQLEGLMKDSKP 156 + AA ++ AL +M+ LA + HPDKGVRFSPY HVD A D+VF +D+L LMK ++ Sbjct: 104 VLSAALAIVEALKAKDMDRLAMYVHPDKGVRFSPYGHVDIANDVVFAKDELPSLMKSNRI 163 Query: 157 YVWGKFAGSGEAIKLTFAEYFKRFVYDADFMNKAETALNKGLGQGTTLNNINEVYPKDSY 216 Y +G F GSGE I +TF++YF++FVYD DF N N +G+G TL NI+EVYP Sbjct: 164 YRFGTFDGSGEPIMMTFSDYFQKFVYDVDFANPHMIGNNIVIGKGNTLENIHEVYPDGV- 222 Query: 217 DFVEYHIAGVDPANEGMDWRSLRLVFEKMGEDRALVGIVHDQWT 260 FVE+H G D +GMDW+SLRLVFE+ G LVGIVHDQWT Sbjct: 223 -FVEFHFTGFDEQYDGMDWKSLRLVFEQDGGSWRLVGIVHDQWT 265 >B4BQQ6.1 B4BQQ6_9BACI Putative uncharacterized protein Length = 266 Score = 184 bits (467), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 88/164 (53%), Positives = 112/164 (68%), Gaps = 2/164 (1%) Query: 97 AMEAATTVLRALSRGNMETLASWAHPDKGVRFSPYAHVDTATDLVFTRDQLEGLMKDSKP 156 + AA ++ AL +M+ LA + HPDKGVRFSPY HVD A D+VF +D+L LMK ++ Sbjct: 104 VLSAALAIVEALKAKDMDRLAMYVHPDKGVRFSPYGHVDIANDVVFAKDELPSLMKSNRI 163 Query: 157 YVWGKFAGSGEAIKLTFAEYFKRFVYDADFMNKAETALNKGLGQGTTLNNINEVYPKDSY 216 Y +G F GSGE I +TF++YF++FVYD DF N N +G+G TL NI+EVYP Sbjct: 164 YRFGTFDGSGEPIMMTFSDYFQKFVYDVDFANPHMIGNNIVIGKGNTLENIHEVYPDGV- 222 Query: 217 DFVEYHIAGVDPANEGMDWRSLRLVFEKMGEDRALVGIVHDQWT 260 FVE+H G D +GMDW+SLRLVFE+ G LVGIVHDQWT Sbjct: 223 -FVEFHFTGFDEQYDGMDWKSLRLVFEQDGGSWRLVGIVHDQWT 265 >B7GFY2.1 B7GFY2_ANOFW Uncharacterized conserved protein Length = 276 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 103/177 (58%), Gaps = 2/177 (1%) Query: 84 QASGAPEEGTPPTAMEAATTVLRALSRGNMETLASWAHPDKGVRFSPYAHVDTATDLVFT 143 Q + T + + A V+ AL +M LAS+ H GVRFSPY HVD DL F+ Sbjct: 101 QLKSEVNQMTSSSLLSVALDVVEALKNKDMNALASYVHSTAGVRFSPYGHVDIQNDLQFS 160 Query: 144 RDQLEGLMKDSKPYVWGKFAGSGEAIKLTFAEYFKRFVYDADFMNKAETALNKGLGQGTT 203 QL L ++ Y WG + GSG+ I+ TF +YF RFVYD DF N N +G G Sbjct: 161 ASQLPSLWSSTQVYQWGVYDGSGDPIQFTFQDYFDRFVYDVDFANPHMIGNNVAVGTGNM 220 Query: 204 LNNINEVYPKDSYDFVEYHIAGVDPANEGMDWRSLRLVFEKMGEDRALVGIVHDQWT 260 +NNI +VYP S FVE+H G DP GMDWRSLRLVFE+ LVGI+HD+WT Sbjct: 221 INNIQQVYPNGS--FVEFHFTGFDPQYSGMDWRSLRLVFEQENGQWKLVGIIHDEWT 275 >B4BB91.1 B4BB91_CLOTM Spore germination protein-like protein Length = 465 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 105 LRALSRGNMETLASWAHPDKGVRFSPYAHVDTATDLVFTRDQLEGLMKDSKPYVWGKFAG 164 ++A+ +ME LA HP+KGV FSPY+H++ VFT+DQL+ LM+ + Y+WG++ G Sbjct: 311 IKAIKEKDMEKLAQMVHPEKGVLFSPYSHIELEKHKVFTKDQLKNLMESEEVYIWGEYDG 370 Query: 165 SGEAIKLTFAEYFKRFVYDADFMNKAETALNKGLGQGTTLNNINEVYPKDSYDFVEYHIA 224 SG+ IKLTFA+YF +FVYD DF N + A N+ G T+ NI++VYP+ F++Y+ Sbjct: 371 SGDPIKLTFAQYFDKFVYDHDFANAEKVAYNEIQQSGNTIVNISDVYPEGK--FMDYYFP 428 Query: 225 GVDPANEGMDWRSLRLVFEKMGEDRALVGIVHDQWT 260 G P +GMDW SLRLVFE+ LV I H QWT Sbjct: 429 GFTPEYDGMDWASLRLVFEEYDGQWYLVCIAHGQWT 464 >A3DIG6.1 A3DIG6_CLOTH Spore germination protein-like protein Length = 465 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 105 LRALSRGNMETLASWAHPDKGVRFSPYAHVDTATDLVFTRDQLEGLMKDSKPYVWGKFAG 164 ++A+ +ME LA HP+KGV FSPY+H++ VFT+DQL+ LM+ + Y+WG++ G Sbjct: 311 IKAIKEKDMEKLAQMVHPEKGVLFSPYSHIELEKHKVFTKDQLKNLMESEEVYIWGEYDG 370 Query: 165 SGEAIKLTFAEYFKRFVYDADFMNKAETALNKGLGQGTTLNNINEVYPKDSYDFVEYHIA 224 SG+ IKLTFA+YF +FVYD DF N + A N+ G T+ NI++VYP+ F++Y+ Sbjct: 371 SGDPIKLTFAQYFDKFVYDHDFANAEKVAYNEIQQSGNTIVNISDVYPEGK--FMDYYFP 428 Query: 225 GVDPANEGMDWRSLRLVFEKMGEDRALVGIVHDQWT 260 G P +GMDW SLRLVFE+ LV I H QWT Sbjct: 429 GFTPEYDGMDWASLRLVFEEYDGQWYLVCIAHGQWT 464 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,258,406,718 Number of extensions: 48057577 Number of successful extensions: 117660 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 117630 Number of HSP's successfully gapped: 17 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)