BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0006.p (348 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K811.1 B3K811_9BACI Sugar diacid recognition domain protein 200 2e-49 A6M1V5.1 A6M1V5_CLOB8 Transcriptional regulator, CdaR 189 4e-46 Q97FA7.1 Q97FA7_CLOAB Uncharacterized conserved protein, YAEG fa... 174 1e-41 C2JMD9.1 C2JMD9_ENTFA Sugar diacid utilization regulator 156 3e-36 A8UB66.1 A8UB66_9LACT Putative uncharacterized protein (Fragment) 152 7e-35 >B3K811.1 B3K811_9BACI Sugar diacid recognition domain protein Length = 344 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 189/344 (54%), Gaps = 11/344 (3%) Query: 9 FQLSENQAQEIVDKMMTDIPYNINIMNADXXXXXXXXXXXXXTVHQGAVQALSTGRMVEV 68 +LS A+ I +MM IPYNIN+M+ + T+H GA +A+ TGR+ EV Sbjct: 1 MKLSRPLAENIAREMMRVIPYNINVMDENGIIMGSGDPARLGTLHTGAQKAIQTGRIYEV 60 Query: 69 WEDSRFEKKGTNEPIVIGHTRVGVIGISGNPDEVRPFCNIVRTTVSLLIEQ-RNSLETLA 127 +E K G NEPIV+ +GV+GI+G+PDEVRP N+++ TV LLIEQ R + L Sbjct: 61 YEAGGGMKPGVNEPIVVDDEVIGVVGITGHPDEVRPLSNLLQVTVVLLIEQERQNKAMLN 120 Query: 128 HEANRKKAFLELLLNHQGAYSQKLRKEAAPYQIDLLLKTVVLYIKHFNAEADPDKLLLRY 187 NR+K + EL + Y + + A Y +DL K VL ++ E L Y Sbjct: 121 QRQNREKFYHELSY-RKAPYDEPFMERAEAYGLDLTRKCRVLLVQSSMGEKAFRHLQQAY 179 Query: 188 P-SFAIDEETQLLILQESGDPGPLIRELLRGQPQVLIAAGKQEASIAESYRQARSAMNIL 246 P S+ ++ + + + + G L+ L+ + + G+QE + S QA SA+ + Sbjct: 180 PQSWNLENDKTVFFMTDVLRFGSLLDRLIDLDEVLRMGIGEQEELASTSLEQAVSALELG 239 Query: 247 LALKPAAQVIAFENVEFLVKLS------HASLAPLNTAAKLEDAVDMIETLRSFINHNCS 300 + + P +V ++++ FL+ LS HASL PL D +D+IETL+ +I N Sbjct: 240 MNIDPHRKVNFYKDLRFLIGLSHISDDAHASLYPLLEQGG--DKLDLIETLQVYIAENGD 297 Query: 301 VSHTADDLNIHRNTLQYRLKRIQALTGKDPRNLLQLFELTHGLL 344 + T LNIHRNTL YRL RI+ LTGK+PR++L LFEL GL+ Sbjct: 298 HNSTVKRLNIHRNTLNYRLNRIKQLTGKNPRHVLDLFELLCGLM 341 >A6M1V5.1 A6M1V5_CLOB8 Transcriptional regulator, CdaR Length = 342 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 187/340 (55%), Gaps = 8/340 (2%) Query: 11 LSENQAQEIVDKMMTDIPYNINIMNADXXXXXXXXXXXXXTVHQGAVQALSTGRMVEVWE 70 LS+ AQ+IV +MM IPYNIN+M+ +H+GA +A+ ++ EV+E Sbjct: 3 LSKTIAQKIVLEMMNVIPYNINVMDESGIIIGSGDSKRIGNLHEGARKAIDNQQINEVFE 62 Query: 71 DSRFEKKGTNEPIVIGHTRVGVIGISGNPDEVRPFCNIVRTTVSLLIEQRNSLETLAHEA 130 + K G NEPI+I +GVIGI+G+PDEVR F +VR T LLIEQ + E + ++ Sbjct: 63 EDDRMKPGVNEPIIINDKVIGVIGITGHPDEVRRFSKLVRVTAVLLIEQSKADEEIQNKR 122 Query: 131 NRKKAFLELLLNHQGAYSQKLRKEAAPYQIDLLLKTVVLYIKHFNAEADPDKLLL-RYPS 189 + F L + + Y + + A Y IDL K V+ + N + K+L +Y S Sbjct: 123 LSMQKFYNELAHRKTKYDENFHQRAKSYGIDLTKKCRVILVDG-NINSRSFKILYQKYSS 181 Query: 190 FA-IDEETQLLILQESGDPGPLIRELLRGQPQVLIAAGKQEASIAESYRQARSAMNILLA 248 ++ +D + + G L+ L + I+ G E A S A AM Sbjct: 182 YSEVDNRIAFFVTSKDLYNG-LLENLKTNKDVKRISIGAMEDVAAISLESAELAMEFGAK 240 Query: 249 LKPAAQVIAFENVEFLVKLSHASLAPL----NTAAKLEDAVDMIETLRSFINHNCSVSHT 304 +K ++ V +++ + F +KLSH + PL + K + +++I+T++++I N + + Sbjct: 241 IKSSSLVYSYDELRFFIKLSHDNKLPLISMMSNLDKAGNKLELIQTIQAYIEENGDIGNV 300 Query: 305 ADDLNIHRNTLQYRLKRIQALTGKDPRNLLQLFELTHGLL 344 A+ LNIHRNTL YRL++I+ LTGK+P+NLL+LFEL GL+ Sbjct: 301 ANRLNIHRNTLNYRLEKIKKLTGKNPKNLLELFELLCGLI 340 >Q97FA7.1 Q97FA7_CLOAB Uncharacterized conserved protein, YAEG family Length = 344 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 179/340 (52%), Gaps = 5/340 (1%) Query: 10 QLSENQAQEIVDKMMTDIPYNINIMNADXXXXXXXXXXXXXTVHQGAVQALSTGRMVEVW 69 +LS+ AQ IV++MM IPYNIN+MN + +H+GA++A+ + ++ Sbjct: 2 RLSKTIAQSIVEEMMNLIPYNINVMNEEGIIIGSGDLSRIGNLHEGALEAIKEKSLNVIY 61 Query: 70 EDSRFEKKGTNEPIVIGHTRVGVIGISGNPDEVRPFCNIVRTTVSLLIEQRNSLETLAHE 129 + K G NEPI+I +GVIGI+G DEV+ F +VR T LLIEQ + E + Sbjct: 62 SEKNSVKPGVNEPIIIDGKVIGVIGITGYSDEVKKFIKLVRVTAVLLIEQAEANEESQNR 121 Query: 130 ANRKKAFLELLLNHQGAYSQKLRKEAAPYQIDLLLKTVVLYIKHFNAEADPDKLLLRYP- 188 +++ F L+N + Y +K K A + D+ K + + N L +Y Sbjct: 122 NLKRERFYYDLINRKTPYDEKFSKIAQDFGFDISKKHRAILVYGNNTSKKFYDLKKKYIF 181 Query: 189 SFAIDEETQLLILQESGDPGPLIRELLRGQPQVLIAAGKQEASIAESYRQARSAMNILLA 248 ++ +D + + LI EL + I G++E A S ++ + + Sbjct: 182 NYDLDINKTAFFISDDYKYKLLIDELKHYKDIEKIGIGEKEDIAAISLENSKKGVELGKK 241 Query: 249 LKPAAQVIAFENVEFLVKLSHAS----LAPLNTAAKLEDAVDMIETLRSFINHNCSVSHT 304 +KP +++ +E ++F + L H + + +++ K E +++I+T++ ++ N ++ Sbjct: 242 IKPNSKIYEYEELKFFIHLHHKNKEEIVNLISSIDKSEYKLELIQTIQIYVEENGQINDA 301 Query: 305 ADDLNIHRNTLQYRLKRIQALTGKDPRNLLQLFELTHGLL 344 A LNIHRNTL YRL+RI+ +TGKDP+N QLFEL GL+ Sbjct: 302 ALRLNIHRNTLNYRLERIKKITGKDPKNFFQLFELFCGLI 341 >C2JMD9.1 C2JMD9_ENTFA Sugar diacid utilization regulator Length = 337 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/349 (31%), Positives = 185/349 (53%), Gaps = 25/349 (7%) Query: 8 LFQLSENQAQEIVDKMMTDIPYNINIMNADXXXXXXXXXXXXXTVHQGAVQALSTGRMVE 67 + +L + QA +IV+K+M DIPYNINIM+ H+GA +A++ + +E Sbjct: 1 MLKLDKIQANKIVEKLMADIPYNINIMDERGKIIASGDSARIGERHRGAERAINERKNIE 60 Query: 68 VWEDSRFEKKGTNEPIVIGHTRVGVIGISGNPDEVRPFCNIVRTTVSLLIEQRNSLETLA 127 +++D+ EKKGTNEPI++ + +GV+GISG PDEVR F +VR+ V LL E+ N+ + Sbjct: 61 IYKDTSLEKKGTNEPIILNNHILGVVGISGEPDEVRKFTKLVRSIVLLLTEELNTQQERE 120 Query: 128 HEANRKKAFLELLLNHQGAYSQKLRKEAAP-YQIDLLLKTVVLYIKHFNAEADPDKLLLR 186 + +K F++ L++ AYS+ L+ EA Y + L + + K DK LL Sbjct: 121 KKKKQKNQFIKHLMHVDSAYSEALKLEALELYNLQLDDQNHCVLTK--------DKRLLS 172 Query: 187 --YPSFAIDEETQLLILQESGDPGPLIRELLRGQPQVLIAAGKQEASIAESYRQARSAMN 244 YP I E ++ S P ++ + + L+ + ++A+I + ++A++ Sbjct: 173 SYYPGHEIFEWENCYLVITSEPP-----QITKPVTEYLVISS-EKATIQQMVQEAQNTY- 225 Query: 245 ILLALKPAAQVIAFENVEFLVK-----LSHASLAPLNTAAKLEDAVDMIETLRSFINHNC 299 +LL+ + ++ +F ++ H L T + D + ET+ F NHN Sbjct: 226 LLLSFLQLEKAKFYQAEDFFIQGIFNFPFHIELDFFETIQTIYD--EYYETVIFFANHNL 283 Query: 300 SVSHTADDLNIHRNTLQYRLKRIQALTGKDPRNLLQLFELTHGLLALYK 348 +++ T+ L+IHRNTL YRLKRI LTG DP+ ++L + +K Sbjct: 284 NINETSQVLHIHRNTLNYRLKRIHELTGMDPKVWQDFWKLFYYFAYCFK 332 >A8UB66.1 A8UB66_9LACT Putative uncharacterized protein (Fragment) Length = 313 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 112/326 (34%), Positives = 169/326 (51%), Gaps = 19/326 (5%) Query: 11 LSENQAQEIVDKMMTDIPYNINIMNADXXXXXXXXXXXXXTVHQGAVQALSTGRMVEVWE 70 L+ +QA+ IV K+M DIPYNINIMN T H+ A +A+ +++EV++ Sbjct: 2 LTNSQARLIVSKLMEDIPYNINIMNNLGIIIASGDNNRIGTSHRAAERAIKEKKIIEVYQ 61 Query: 71 DSRFEKKGTNEPIVIGHTRVGVIGISGNPDEVRPFCNIVRTTVSLLIEQRNSLETLAHEA 130 D+ EKKGTNEPI+ +GV+GI+G+P+EVRPF IV+T LLIE+ N + E Sbjct: 62 DTHLEKKGTNEPIIYEDIIIGVVGITGDPNEVRPFTKIVKTVALLLIEELNIYK--QKEE 119 Query: 131 NR--KKAFLELLLNHQGAYSQKLRKEAA-PYQIDLLLKTVVLYIKHFNAEADPDKLLLRY 187 NR K FL+ + G Y++ L+KEA+ Y+++L ++ + K +LR Sbjct: 120 NRVAKNDFLKQIRLSDGMYTELLKKEASEKYELELGQPYYGVFAER--------KEILR- 170 Query: 188 PSFAIDEETQLLILQESGDPGPLIRELLRGQPQVLIAAGKQEASIAESYRQARSAMNILL 247 AI + +L E + L I E +I + + + +L Sbjct: 171 ---AIASKKELFEWSEGSIIFMETVDSLETATNEFIIISSSEKNINQILQDIKQTYALLS 227 Query: 248 ALKPAAQVIAFENVEFLVKLSHASLAPLNTAAK--LEDAVDMIETLRSFINHNCSVSHTA 305 L + I +L L SL P K E A + ETL SF +N S++ T+ Sbjct: 228 FLNTKKEGINKTESCYLANLFSFSLPPNQKLLKKIKEVAPEYAETLISFARNNKSINDTS 287 Query: 306 DDLNIHRNTLQYRLKRIQALTGKDPR 331 +L+IHRNTL YR+++I+ LTGK+PR Sbjct: 288 LELHIHRNTLNYRIQKIEELTGKNPR 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,784,909,796 Number of extensions: 66837284 Number of successful extensions: 179341 Number of sequences better than 1.0e-05: 437 Number of HSP's gapped: 178715 Number of HSP's successfully gapped: 448 Length of query: 348 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 212 Effective length of database: 1,779,438,163 Effective search space: 377240890556 Effective search space used: 377240890556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)