BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0004.p (431 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8UB63.1 A8UB63_9LACT Permease, GntP family protein 436 e-120 C2EGK5.1 C2EGK5_9LACO GntP family gluconate:proton (H+) symporter 427 e-118 Q04DY3.1 Q04DY3_OENOB H+/gluconate symporter or related permease 422 e-116 Q830X1.1 Q830X1_ENTFA Permease, GntP family 421 e-116 C2JME1.1 C2JME1_ENTFA GntP family gluconate:proton (H+) symporter 420 e-115 >A8UB63.1 A8UB63_9LACT Permease, GntP family protein Length = 430 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 236/427 (55%), Positives = 288/427 (67%), Gaps = 2/427 (0%) Query: 5 TIGWYXXXXXXXXXXXXXXRKLNPVYSLFXXXXXXXXXXXXNLEQTVSVLVSGTQSVMGT 64 TI W+ +K NPVYSLF +L T+ +L+SGTQSV+GT Sbjct: 5 TIPWFAAIIGLIVAIVLILKKFNPVYSLFFGAIVGCLVGGASLVDTIDILISGTQSVIGT 64 Query: 65 VLRVLAAGVLAGVMMESGAAETIAQAIVKKFGGSKXXXXXXXXXXXXXXVGVFIPVAVLI 124 +RVLAAG+LAGVMMESGAAE+IA AIV K G K VGVFIPVAVLI Sbjct: 65 AIRVLAAGMLAGVMMESGAAESIANAIVTKLGDKKAILSLALSTMIITAVGVFIPVAVLI 124 Query: 125 VAPIALSVGNKMGISKMXXXXXXXXXXXXXNIISPNPNTIAAARGFDLDLSHVMLAGFIP 184 VAPIALSVG + GISK+ NIISPNPNTIAAA GF L+LS VMLAGFIP Sbjct: 125 VAPIALSVGKQTGISKIALLTALSGGGKAGNIISPNPNTIAAADGFGLNLSSVMLAGFIP 184 Query: 185 AVCGLIVTVIVASLLKNKGVRVLDGEAVYNEIDTSKYPPLGKAIVAPLVAVILLMINPIG 244 A+ GL VIVA+L+KNKG V D + + E+ + PLGKA++AP+++++LL++NPIG Sbjct: 185 ALFGLATAVIVANLIKNKGEMVRDRDILKKEVK--ELMPLGKALIAPMLSIVLLLVNPIG 242 Query: 245 SLTGIDALSRIKVDALYILPVAGIIGLLAMGQGNKILAFTSSGLNKMTATVXXXXXXXXX 304 +L I+ L+ +K+DALYILP A IIG LAMG NKI + SSG+ ++T TV Sbjct: 243 TLLKIEVLTNLKIDALYILPFASIIGTLAMGHANKISEYASSGIRRVTDTVLILIGAGAI 302 Query: 305 XXXXXXSDLSVQIVSLIQAAGISGTFLAPISGILMAAATGSTSTGVILATGSFGQAILNM 364 SDLSVQ+V LI GISGTFLAPISGILM A GSTST VILATGSFGQAIL+ Sbjct: 303 AGLISASDLSVQVVKLIHTIGISGTFLAPISGILMGLAVGSTSTAVILATGSFGQAILDT 362 Query: 365 GTAPLAAAVMVHTGATVIDSLPQGNYFHVTADSMKMSIKQRMGLIPYEXXXXXXXXXXXX 424 GT+ LAA+VMVHTGATVIDS+PQGNYFH++A+SM M+IK+R+ +IPYE Sbjct: 363 GTSSLAASVMVHTGATVIDSVPQGNYFHISANSMNMTIKERLKVIPYEMCVGGSMTVVAT 422 Query: 425 XIYGFLL 431 +YGF+L Sbjct: 423 ILYGFIL 429 >C2EGK5.1 C2EGK5_9LACO GntP family gluconate:proton (H+) symporter Length = 431 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 235/431 (54%), Positives = 284/431 (65%), Gaps = 1/431 (0%) Query: 1 MEGLTIGWYXXXXXXXXXXXXXXRKLNPVYSLFXXXXXXXXXXXXNLEQTVSVLVSGTQS 60 M +TI W+ +K NPVYSLF + QTV+V++SGTQS Sbjct: 1 MGSITIPWFSAIFGLLLAIFLILKKFNPVYSLFIGAIVGCLLGGMSFAQTVNVMISGTQS 60 Query: 61 VMGTVLRVLAAGVLAGVMMESGAAETIAQAIVKKFGGSKXXXXXXXXXXXXXXVGVFIPV 120 ++GT +RVLAAG+LAGVMMESGAAE+IA AIV K G + VGVFIPV Sbjct: 61 IIGTAIRVLAAGMLAGVMMESGAAESIAHAIVTKMGNKQALLSLALSTMIITAVGVFIPV 120 Query: 121 AVLIVAPIALSVGNKMGISKMXXXXXXXXXXXXXNIISPNPNTIAAARGFDLDLSHVMLA 180 AVLIVAPIALSVG + GISK+ NIISPNPNTIAAA GF L+LSHVMLA Sbjct: 121 AVLIVAPIALSVGKQTGISKLSLLVALSGGGKAGNIISPNPNTIAAANGFHLELSHVMLA 180 Query: 181 GFIPAVCGLIVTVIVASLLKNKGVRVLDGEAVYNEIDTSKYPPLGKAIVAPLVAVILLMI 240 GFIPA+ GL VIVASL+KNKG ++ + + E+ L KA++AP++++ILL++ Sbjct: 181 GFIPALFGLATAVIVASLVKNKG-EFVNSKDIDEEVTEKHIISLKKALIAPVLSIILLLM 239 Query: 241 NPIGSLTGIDALSRIKVDALYILPVAGIIGLLAMGQGNKILAFTSSGLNKMTATVXXXXX 300 NPIGS+ I+ L+ KVDA+YILP A +IG +AMGQG KI ++ GL K+T TV Sbjct: 240 NPIGSILHIEVLANFKVDAMYILPFASVIGAIAMGQGKKIGSYAKLGLAKVTDTVLILIG 299 Query: 301 XXXXXXXXXXSDLSVQIVSLIQAAGISGTFLAPISGILMAAATGSTSTGVILATGSFGQA 360 SDLS +IV+LI AGISGTFLAPISGILM A GSTST VILATGSFG A Sbjct: 300 AGAIAGLISSSDLSKEIVNLINMAGISGTFLAPISGILMGLAVGSTSTAVILATGSFGNA 359 Query: 361 ILNMGTAPLAAAVMVHTGATVIDSLPQGNYFHVTADSMKMSIKQRMGLIPYEXXXXXXXX 420 IL GT+ + AAVMVHTGATVIDS+PQGNYFH+TA SM MSIK RM +IPYE Sbjct: 360 ILGTGTSAIGAAVMVHTGATVIDSVPQGNYFHITAQSMHMSIKDRMKVIPYEACVGGVMT 419 Query: 421 XXXXXIYGFLL 431 +YGF+L Sbjct: 420 IVATILYGFIL 430 >Q04DY3.1 Q04DY3_OENOB H+/gluconate symporter or related permease Length = 433 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/410 (56%), Positives = 282/410 (68%), Gaps = 4/410 (0%) Query: 25 KLNPVYSLFXXXXXXXXXXXXNLEQTVSVLVSGTQSVMGTVLRVLAAGVLAGVMMESGAA 84 KLNPVYSL +L QTV+++V+GTQSVMGTV+RVLAAGVLAGVMMESGAA Sbjct: 24 KLNPVYSLLLGTIFGAIIGGSSLSQTVNIVVAGTQSVMGTVVRVLAAGVLAGVMMESGAA 83 Query: 85 ETIAQAIVKKFGGSKXXXXXXXXXXXXXXVGVFIPVAVLIVAPIALSVGNKMGISKMXXX 144 IA+AIV K G VGVFIPVAVLIVAPIAL VG++M ISK+ Sbjct: 84 NAIARAIVTKLGEKWAILSLALATMIITAVGVFIPVAVLIVAPIALEVGSRMKISKLALL 143 Query: 145 XXXXXXXXXXNIISPNPNTIAAARGFDLDLSHVMLAGFIPAVCGLIVTVIVASLLKNKGV 204 NIISPNPNTIAAARGF+L+LS +M+A FIPA+ GL + V++A+ L+++G Sbjct: 144 VALSGGGKAGNIISPNPNTIAAARGFNLELSQLMVADFIPALFGLAMAVLLATFLRHRGA 203 Query: 205 RVLDGEAVYNEIDTSKY----PPLGKAIVAPLVAVILLMINPIGSLTGIDALSRIKVDAL 260 + N+ T + P L AIVAPL+AVILL+INPIGS+ + L + +VDA+ Sbjct: 204 IASMADVEVNQKQTGQTKLETPSLRSAIVAPLLAVILLLINPIGSILHVSFLEKFQVDAI 263 Query: 261 YILPVAGIIGLLAMGQGNKILAFTSSGLNKMTATVXXXXXXXXXXXXXXXSDLSVQIVSL 320 YILP AGI+G+LAM +GNK+L +T +G+ +MT V S L +IVSL Sbjct: 264 YILPFAGIVGMLAMHKGNKVLEYTKAGMERMTDVVLILIGAGAIGGLITSSTLPAEIVSL 323 Query: 321 IQAAGISGTFLAPISGILMAAATGSTSTGVILATGSFGQAILNMGTAPLAAAVMVHTGAT 380 I+ +GISGTFLAPISGILMAAAT STSTGVILATGSF +AIL+ GTAPLAAAVMVHTGAT Sbjct: 324 IKVSGISGTFLAPISGILMAAATASTSTGVILATGSFSKAILSFGTAPLAAAVMVHTGAT 383 Query: 381 VIDSLPQGNYFHVTADSMKMSIKQRMGLIPYEXXXXXXXXXXXXXIYGFL 430 VID LPQGNYFHVTA++M M++K+RMG +PYE IYGF Sbjct: 384 VIDHLPQGNYFHVTANAMNMNLKERMGSVPYETAVGLTMTIVGTLIYGFF 433 >Q830X1.1 Q830X1_ENTFA Permease, GntP family Length = 430 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 230/431 (53%), Positives = 285/431 (66%), Gaps = 2/431 (0%) Query: 1 MEGLTIGWYXXXXXXXXXXXXXXRKLNPVYSLFXXXXXXXXXXXXNLEQTVSVLVSGTQS 60 M +TI W +K NPVYSLF +L TV+VL++GTQS Sbjct: 1 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS 60 Query: 61 VMGTVLRVLAAGVLAGVMMESGAAETIAQAIVKKFGGSKXXXXXXXXXXXXXXVGVFIPV 120 +MGT +RVLAAG+LAGVMMESGAAE+IA AIV+K G K VGVFIPV Sbjct: 61 IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV 120 Query: 121 AVLIVAPIALSVGNKMGISKMXXXXXXXXXXXXXNIISPNPNTIAAARGFDLDLSHVMLA 180 AVLIVAPIALSVG GISK+ NIISPNPNTIAAA GFDL LS VM+A Sbjct: 121 AVLIVAPIALSVGKSTGISKLSLLIALSGGGKAGNIISPNPNTIAAANGFDLPLSDVMIA 180 Query: 181 GFIPAVCGLIVTVIVASLLKNKGVRVLDGEAVYNEIDTSKYPPLGKAIVAPLVAVILLMI 240 GFIPAV GLI V++A++++NKG V + + V E T + PL KA++AP++A++LL++ Sbjct: 181 GFIPAVFGLITAVVLANIMRNKGSMVKETDLV--EEQTKELLPLKKALIAPVLAIVLLLL 238 Query: 241 NPIGSLTGIDALSRIKVDALYILPVAGIIGLLAMGQGNKILAFTSSGLNKMTATVXXXXX 300 NPIG++ I + + +DALYILP A ++G +A+GQ ++ + SSGL ++T TV Sbjct: 239 NPIGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIG 298 Query: 301 XXXXXXXXXXSDLSVQIVSLIQAAGISGTFLAPISGILMAAATGSTSTGVILATGSFGQA 360 SDLS QIV LI GISGTFLAPISGILM A GSTST VILATGSFG A Sbjct: 299 AGAIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPA 358 Query: 361 ILNMGTAPLAAAVMVHTGATVIDSLPQGNYFHVTADSMKMSIKQRMGLIPYEXXXXXXXX 420 IL+MGT+ L+AAVMVHTGATVIDS+PQGNYFH+TA SM M+IK+R+ +IPYE Sbjct: 359 ILDMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMT 418 Query: 421 XXXXXIYGFLL 431 +YGF+L Sbjct: 419 IVATILYGFIL 429 >C2JME1.1 C2JME1_ENTFA GntP family gluconate:proton (H+) symporter Length = 430 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 229/431 (53%), Positives = 285/431 (66%), Gaps = 2/431 (0%) Query: 1 MEGLTIGWYXXXXXXXXXXXXXXRKLNPVYSLFXXXXXXXXXXXXNLEQTVSVLVSGTQS 60 M +TI W +K NPVYSLF +L TV+VL++GTQS Sbjct: 1 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS 60 Query: 61 VMGTVLRVLAAGVLAGVMMESGAAETIAQAIVKKFGGSKXXXXXXXXXXXXXXVGVFIPV 120 +MGT +RVLAAG+LAGVMMESGAAE+IA AIV+K G K VGVFIPV Sbjct: 61 IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV 120 Query: 121 AVLIVAPIALSVGNKMGISKMXXXXXXXXXXXXXNIISPNPNTIAAARGFDLDLSHVMLA 180 AVLIVAPIALSVG G+SK+ NIISPNPNTIAAA GFDL LS VM+A Sbjct: 121 AVLIVAPIALSVGKSTGVSKLSLLIALSGGGKAGNIISPNPNTIAAANGFDLPLSDVMIA 180 Query: 181 GFIPAVCGLIVTVIVASLLKNKGVRVLDGEAVYNEIDTSKYPPLGKAIVAPLVAVILLMI 240 GFIPAV GLI V++A++++NKG V + + V E T + PL KA++AP++A++LL++ Sbjct: 181 GFIPAVFGLITAVVLANIMRNKGSMVKETDLV--EEQTKELLPLKKALIAPVLAIVLLLL 238 Query: 241 NPIGSLTGIDALSRIKVDALYILPVAGIIGLLAMGQGNKILAFTSSGLNKMTATVXXXXX 300 NPIG++ I + + +DALYILP A ++G +A+GQ ++ + SSGL ++T TV Sbjct: 239 NPIGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIG 298 Query: 301 XXXXXXXXXXSDLSVQIVSLIQAAGISGTFLAPISGILMAAATGSTSTGVILATGSFGQA 360 SDLS QIV LI GISGTFLAPISGILM A GSTST VILATGSFG A Sbjct: 299 AGAIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPA 358 Query: 361 ILNMGTAPLAAAVMVHTGATVIDSLPQGNYFHVTADSMKMSIKQRMGLIPYEXXXXXXXX 420 IL+MGT+ L+AAVMVHTGATVIDS+PQGNYFH+TA SM M+IK+R+ +IPYE Sbjct: 359 ILDMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMT 418 Query: 421 XXXXXIYGFLL 431 +YGF+L Sbjct: 419 IVATILYGFIL 429 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,817,178,140 Number of extensions: 63125061 Number of successful extensions: 223344 Number of sequences better than 1.0e-05: 409 Number of HSP's gapped: 223296 Number of HSP's successfully gapped: 410 Length of query: 431 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 292 Effective length of database: 1,751,175,118 Effective search space: 511343134456 Effective search space used: 511343134456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)