BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0002.p (740 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE08.1 B3KE08_9BACI RNA binding S1 domain protein 1127 0.0 B1D5N7.1 B1D5N7_9BACL RNA binding S1 domain protein 1035 0.0 C0ZK32.1 C0ZK32_BREBN Putative uncharacterized protein ydcI 888 0.0 C1TI74.1 C1TI74_9FIRM Transcriptional accessory protein 864 0.0 C1P9H9.1 C1P9H9_BACCO RNA binding S1 domain protein 857 0.0 >B3KE08.1 B3KE08_9BACI RNA binding S1 domain protein Length = 740 Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/715 (77%), Positives = 613/715 (85%), Gaps = 1/715 (0%) Query: 22 ITQAIAKELGISVKQVRTTVGLLDEGNTIPFIARYRKEMTGELDENVLRDIEERLSYLRN 81 I + IAKEL +S KQVRTTV LLDEGNTIPFIARYRKEMTGELDEN LRDIEER YLRN Sbjct: 23 IVKQIAKELQLSEKQVRTTVELLDEGNTIPFIARYRKEMTGELDENQLRDIEERTGYLRN 82 Query: 82 LGDRKKDVLRSIEEQGKLTKELQEQILKAVKLQEVEDLYRPFRQKRKTRASAAKEKGLEP 141 L RK++V+R IEEQGKLT+EL+ I AVKLQEVEDLYRP++QKRKTRAS AKEKGLEP Sbjct: 83 LEVRKREVIRIIEEQGKLTEELKASITAAVKLQEVEDLYRPYKQKRKTRASVAKEKGLEP 142 Query: 142 LADWVMEQRRQGQPLEEAAKYIDADKGVESAELALQGAMDIIAENIADDPAVRSWVRQYT 201 L++W+ Q +Q + EAAKYID +KGV SAE ALQGAMDI+AENIADD AVRSWVR+++ Sbjct: 143 LSEWIWSQPKQADAMVEAAKYIDEEKGVASAEEALQGAMDILAENIADDAAVRSWVRRFS 202 Query: 202 ASQGILVSEAKDAEQESVYENYYNYREPVHKMPPHRILAINRGERENVLKVGIEVTADKI 261 GIL SEAKD E ESVYENYYNYRE KMPPHRILAINRGEREN+LKVG+EV ++ I Sbjct: 203 LDHGILTSEAKDTEAESVYENYYNYRELAKKMPPHRILAINRGERENILKVGLEVPSESI 262 Query: 262 HAFILRKLVKGPSPVKELLEAVTEDAYKRLIAPSVEREVRGEMTEKGETQAIAIFSGNLR 321 H +I ++++KGPS V ++L AV ED+YKRLIAPS+EREVRGE+TEKGE QAI+IF+GNLR Sbjct: 263 HGYIGKQVLKGPSAVTDILTAVIEDSYKRLIAPSIEREVRGELTEKGENQAISIFAGNLR 322 Query: 322 SLLLQPPVKGRNVLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPPNNXXXXXXXXXXXX 381 SLLLQPPVKGR VLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPP N Sbjct: 323 SLLLQPPVKGRRVLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPPANKRREAAAKFKEL 382 Query: 382 XXXYGIQLIVIGNGTGSRETEQFTA-EVIAEIGDPGLAYLIVNEAGASVYSASKLAQEEF 440 YGI+LIVIGNGT SRETEQF A EVIAE+ DP LAYLIVNEAGASVYSASKLAQEEF Sbjct: 383 IAKYGIKLIVIGNGTASRETEQFVAEEVIAELADPELAYLIVNEAGASVYSASKLAQEEF 442 Query: 441 PDLDVAERSAASIARRVQDPLAELVKIDPKAIGVGQYQHDVSQKHLEESLKGVVESAVNH 500 PDLDVAERSAASIARRVQDPLAELVKIDPK+IGVGQYQHDV+QKHLEESLK VVESAVNH Sbjct: 443 PDLDVAERSAASIARRVQDPLAELVKIDPKSIGVGQYQHDVTQKHLEESLKAVVESAVNH 502 Query: 501 VGVDVNTASASLLSYVAGVNSTIAKNIVKFREENGKFTTRKQLQKVPRLGAKSYEQCIGF 560 VGVDVNTAS SLLSYVAG+N+TIAKNIVK+REENGKF +RKQLQKVPRLGAK+YEQC+GF Sbjct: 503 VGVDVNTASPSLLSYVAGINATIAKNIVKYREENGKFVSRKQLQKVPRLGAKTYEQCVGF 562 Query: 561 LRIPGGDNTLDRTPIHPESYPVVDRLFRELGLDVASLGSKXXXXXXXXXXXXXXXXKLDV 620 +RI G+N LDRTPIHPESY VVDRLF+EL + + LGSK KL+V Sbjct: 563 MRISEGENILDRTPIHPESYAVVDRLFQELQVGLDKLGSKELAELLDAQQPESLAVKLEV 622 Query: 621 GVPTLRDILESLQRPGRDPREELPPPIFRTDVLKIEDLVPGMEMQGTVRNVIDFGAFVDI 680 GVPTLRDIL+SLQRPGRDPREELP PIFR DVLKIEDLVPGME+QGTVRNVIDFGAFVDI Sbjct: 623 GVPTLRDILDSLQRPGRDPREELPLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDI 682 Query: 681 GIKNDGLVHISQLSGSYVKHPMDVVSVGDNVTVWVMGVDLKKGRVSLTMRPPRDN 735 GIK+DGLVHISQLS +VKHPMDVVSVGDNVTVWV+ VDLKKGRV LTMR P+D Sbjct: 683 GIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMRKPKDQ 737 >B1D5N7.1 B1D5N7_9BACL RNA binding S1 domain protein Length = 747 Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/714 (71%), Positives = 591/714 (82%), Gaps = 5/714 (0%) Query: 22 ITQAIAKELGISVKQVRTTVGLLDEGNTIPFIARYRKEMTGELDENVLRDIEERLSYLRN 81 I +++A +L I + +V++ V LLDEGNTIPFIARYRKEMTGELDEN LR IEERL Y+RN Sbjct: 31 IIKSMASQLSIPITKVKSAVALLDEGNTIPFIARYRKEMTGELDENDLRAIEERLQYMRN 90 Query: 82 LGDRKKDVLRSIEEQGKLTKELQEQILKAVKLQEVEDLYRPFRQKRKTRASAAKEKGLEP 141 L +RK++V+R I+EQGKLT EL+ I + KLQEVEDLYRP+RQKRKTRAS AKE+GLEP Sbjct: 91 LEERKREVIRLIDEQGKLTDELRRSIEASGKLQEVEDLYRPYRQKRKTRASVAKERGLEP 150 Query: 142 LADWVMEQRRQGQPLEEAAKYIDADKGVESAELALQGAMDIIAENIADDPAVRSWVRQYT 201 LA W+ Q RQG+PL EA+KY++ DKGV SAE ALQGAMDI+AENIADD A+RSWVR++T Sbjct: 151 LALWLWAQPRQGEPLAEASKYVNEDKGVASAEDALQGAMDILAENIADDAAIRSWVRKHT 210 Query: 202 ASQGILVSEAKDAEQESVYENYYNYREPVHKMPPHRILAINRGERENVLKVGIEVTADKI 261 Q +L +EAK+A+ ESVYE YY+Y+EPV K+PPHR+LAINRGERE++L+V E++A++I Sbjct: 211 FDQALLKTEAKNADAESVYEMYYSYQEPVRKLPPHRVLAINRGEREDILRVSFELSAERI 270 Query: 262 HAFILRKLVKGPS--PVKELLEAVTEDAYKRLIAPSVEREVRGEMTEKGETQAIAIFSGN 319 H FI RK+++ + V+++L AV EDAYKRLI+PS+EREVRGE+TEK E AI+IFS N Sbjct: 271 HEFIQRKVLRQQTAPAVRDVLAAVIEDAYKRLISPSIEREVRGELTEKAEEHAISIFSEN 330 Query: 320 LRSLLLQPPVKGRNVLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPPNNXXXXXXXXXX 379 LR+LLLQPPV+G VLGVDPAYRTGCKLAV+DDTGKL+EVAVTYPTPPNN Sbjct: 331 LRNLLLQPPVRGNVVLGVDPAYRTGCKLAVIDDTGKLMEVAVTYPTPPNNKAAEAEKIIN 390 Query: 380 XXXXXYGIQLIVIGNGTGSRETEQFTAEVIAE---IGDPGLAYLIVNEAGASVYSASKLA 436 YG+ LIVIGNGT SRETEQF A +I + G L Y+IV+EAGASVYSASKLA Sbjct: 391 GQIDRYGVTLIVIGNGTASRETEQFIAGLIGKRKAAGQGELKYIIVSEAGASVYSASKLA 450 Query: 437 QEEFPDLDVAERSAASIARRVQDPLAELVKIDPKAIGVGQYQHDVSQKHLEESLKGVVES 496 EEFPDLDVAERSA SIARR+QDPLAELVKI+PKAIGVGQYQHDVSQK L+ESL GVVES Sbjct: 451 AEEFPDLDVAERSAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQKRLDESLGGVVES 510 Query: 497 AVNHVGVDVNTASASLLSYVAGVNSTIAKNIVKFREENGKFTTRKQLQKVPRLGAKSYEQ 556 AVNHVGVDVNTASASLLSYVAG+N+TIAKNIVK+REENG+F R QLQKVPRLGAKSYEQ Sbjct: 511 AVNHVGVDVNTASASLLSYVAGINATIAKNIVKYREENGRFAKRGQLQKVPRLGAKSYEQ 570 Query: 557 CIGFLRIPGGDNTLDRTPIHPESYPVVDRLFRELGLDVASLGSKXXXXXXXXXXXXXXXX 616 CIGFLRIP N LD TPIHPESY VV +LF ELGL LG++ Sbjct: 571 CIGFLRIPEAANPLDSTPIHPESYDVVGKLFAELGLKQNQLGTEELKEKLSGIDPAAMAS 630 Query: 617 KLDVGVPTLRDILESLQRPGRDPREELPPPIFRTDVLKIEDLVPGMEMQGTVRNVIDFGA 676 L VGVPTL+DI++SL RPGRDPREELPPPIF TDVL IEDL PGME+QGTVRNVIDFGA Sbjct: 631 SLGVGVPTLKDIIDSLLRPGRDPREELPPPIFHTDVLNIEDLTPGMELQGTVRNVIDFGA 690 Query: 677 FVDIGIKNDGLVHISQLSGSYVKHPMDVVSVGDNVTVWVMGVDLKKGRVSLTMR 730 F+DIGIKNDGLVHISQ+S +VKHPMDVVSVGDNVTVWV+GVDLKKGRVSLTMR Sbjct: 691 FIDIGIKNDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLGVDLKKGRVSLTMR 744 >C0ZK32.1 C0ZK32_BREBN Putative uncharacterized protein ydcI Length = 720 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/713 (61%), Positives = 547/713 (76%), Gaps = 3/713 (0%) Query: 22 ITQAIAKELGISVKQVRTTVGLLDEGNTIPFIARYRKEMTGELDENVLRDIEERLSYLRN 81 + Q IA++ G+ QV TV LLDEGNT+PFIARYRKEMTG+LDE +R IEER+ YLRN Sbjct: 6 MIQTIAQDTGVKPHQVERTVALLDEGNTVPFIARYRKEMTGQLDETQIRAIEERVRYLRN 65 Query: 82 LGDRKKDVLRSIEEQGKLTKELQEQILKAVKLQEVEDLYRPFRQKRKTRASAAKEKGLEP 141 L RK++V+R I+EQGKLT EL+ I +A KLQEVEDLYRP+RQKR+TRA+ AKEKGLEP Sbjct: 66 LSVRKEEVVRLIDEQGKLTDELRAAIERATKLQEVEDLYRPYRQKRRTRATMAKEKGLEP 125 Query: 142 LADWVMEQRRQGQPLEEAAKYIDADKGVESAELALQGAMDIIAENIADDPAVRSWVRQYT 201 LA+++M + G P EEA YI+ +KGVE+ E ALQGAMDI+AE ++DDP +R WVRQ + Sbjct: 126 LANYLMSLPKAGNPEEEAKPYINPEKGVETTEQALQGAMDIVAELLSDDPEIRQWVRQRS 185 Query: 202 ASQGILVSE--AKDAEQESVYENYYNYREPVHKMPPHRILAINRGERENVLKVGIEVTAD 259 +G+L++E A++A++++VY+ YY Y EP+ K+ PHR+LAINRGE E +LKV IE Sbjct: 186 VQKGLLLTEQKAEEADEKNVYQMYYAYSEPLKKVVPHRVLAINRGENEGILKVSIEAPVA 245 Query: 260 KIHAFILRKLVKGPSPVKELLEAVTEDAYKRLIAPSVEREVRGEMTEKGETQAIAIFSGN 319 +I A++ ++ + + ++LL EDAYKRLIAPS+EREVR E+TE E +AI IF+ N Sbjct: 246 EILAWMQKRTIPRDTVARDLLTVTVEDAYKRLIAPSIEREVRAELTEAAEERAIHIFAEN 305 Query: 320 LRSLLLQPPVKGRNVLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPPNNXXXXXXXXXX 379 LR+LLLQPPVKG+ VLGVDPA+RTGCKLAVVD+TGKLLEVAV YPTPP N Sbjct: 306 LRNLLLQPPVKGKVVLGVDPAFRTGCKLAVVDETGKLLEVAVVYPTPPANKVAEATVKVK 365 Query: 380 XXXXXYGIQLIVIGNGTGSRETEQFTAEVIAEIGDPGLAYLIVNEAGASVYSASKLAQEE 439 YG+ ++ IGNGT SRETEQF A ++ E+ + Y+IVNEAGASVYSAS LA+EE Sbjct: 366 QMIETYGVTVVAIGNGTASRETEQFIATLLKELKRE-VMYIIVNEAGASVYSASALAKEE 424 Query: 440 FPDLDVAERSAASIARRVQDPLAELVKIDPKAIGVGQYQHDVSQKHLEESLKGVVESAVN 499 FPDLDVAERSAASIARR+QDPLAELVKIDPK++GVGQYQHDVSQ L +SL+ VVESAVN Sbjct: 425 FPDLDVAERSAASIARRLQDPLAELVKIDPKSVGVGQYQHDVSQSRLADSLQFVVESAVN 484 Query: 500 HVGVDVNTASASLLSYVAGVNSTIAKNIVKFREENGKFTTRKQLQKVPRLGAKSYEQCIG 559 HVGVDVNTAS SLL YV+G++ +A NIVK REE G FT R QL+ VPRLGAK+YEQCIG Sbjct: 485 HVGVDVNTASPSLLQYVSGISRQVAGNIVKKREEIGMFTERSQLKAVPRLGAKTYEQCIG 544 Query: 560 FLRIPGGDNTLDRTPIHPESYPVVDRLFRELGLDVASLGSKXXXXXXXXXXXXXXXXKLD 619 FLR+ G N LD+TPIHPESY +L LG+ +GS+ KL Sbjct: 545 FLRVMDGANPLDKTPIHPESYEATHQLLSMLGISAQEIGSENCKERVQSLDVKETAAKLG 604 Query: 620 VGVPTLRDILESLQRPGRDPREELPPPIFRTDVLKIEDLVPGMEMQGTVRNVIDFGAFVD 679 +G PTL+DI++SL RPGRDPR+ELP P+ R+DVL++ DL GM++QGTVRNV+DFGAFVD Sbjct: 605 IGEPTLQDIVDSLLRPGRDPRDELPKPLLRSDVLQLSDLSVGMKLQGTVRNVVDFGAFVD 664 Query: 680 IGIKNDGLVHISQLSGSYVKHPMDVVSVGDNVTVWVMGVDLKKGRVSLTMRPP 732 IG+KNDGLVHIS+L +VKHP++VV+VGD V VWV+ +D K+ RV +TM P Sbjct: 665 IGLKNDGLVHISRLKKGFVKHPLEVVTVGDIVDVWVVEIDEKRQRVGMTMIAP 717 >C1TI74.1 C1TI74_9FIRM Transcriptional accessory protein Length = 718 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/709 (61%), Positives = 529/709 (74%), Gaps = 2/709 (0%) Query: 22 ITQAIAKELGISVKQVRTTVGLLDEGNTIPFIARYRKEMTGELDENVLRDIEERLSYLRN 81 I + +A G+ +K+V +TV LLD GNT+PFI+RYRKEMTGEL+E +R IEE+L Y RN Sbjct: 7 IIRHVAGNTGLPLKKVESTVQLLDAGNTVPFISRYRKEMTGELNEVEIRSIEEQLKYQRN 66 Query: 82 LGDRKKDVLRSIEEQGKLTKELQEQILKAVKLQEVEDLYRPFRQKRKTRASAAKEKGLEP 141 L RK++V+R IEEQGKLT ELQ++I+ A KL VEDLYRP+RQKRKTRA A+EKGLEP Sbjct: 67 LQQRKEEVVRLIEEQGKLTDELQQKIMSAGKLNIVEDLYRPYRQKRKTRAGVAREKGLEP 126 Query: 142 LADWVMEQRRQGQPLEEAAKYIDADKGVESAELALQGAMDIIAENIADDPAVRSWVRQYT 201 LA +++ + G P EA Y++ +KG+ +AE ALQGA DIIAE +ADDP +R WVR+Y Sbjct: 127 LALYILSLPKTGDPGLEAQIYVNEEKGILTAEDALQGACDIIAETVADDPEIRGWVRRYI 186 Query: 202 ASQGILVSEAKDAEQESVYENYYNYREPVHKMPPHRILAINRGERENVLKVGIEVTADKI 261 G+LV+EAK+ E SVYE YY Y E V + PHR LA+NRGE+E +LKV IEV ++I Sbjct: 187 FRNGLLVTEAKEKETRSVYEMYYEYSEAVRTVAPHRTLAVNRGEKEGILKVRIEVPEEEI 246 Query: 262 HAFILRKLVKGPSPVK-ELLEAVTEDAYKRLIAPSVEREVRGEMTEKGETQAIAIFSGNL 320 + ++ R+ +K P V +++ D YKRL+ P+VER+VR E+TEK E QAI IFS NL Sbjct: 247 YGYLNRRWLKNPVSVTVAYVQSAVIDGYKRLLFPAVERDVRNELTEKAEEQAIKIFSKNL 306 Query: 321 RSLLLQPPVKGRNVLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPPNNXXXXXXXXXXX 380 R LLLQPPVKG VLGVDP +RTGCK AVVDDTGKL EV V YPTPP Sbjct: 307 RQLLLQPPVKGEVVLGVDPGFRTGCKWAVVDDTGKLWEVGVVYPTPPQKKITETKEIFRQ 366 Query: 381 XXXXYGIQLIVIGNGTGSRETEQFTAEVIAEIGDPGLAYLIVNEAGASVYSASKLAQEEF 440 YGI +I IGNGT SRETE + I E P L Y+IV+EAGASVYSAS+LA EF Sbjct: 367 LADRYGITVIAIGNGTASRETELVVVDFIKEYVRP-LQYIIVSEAGASVYSASELAAREF 425 Query: 441 PDLDVAERSAASIARRVQDPLAELVKIDPKAIGVGQYQHDVSQKHLEESLKGVVESAVNH 500 P LDVAERSA SIARR+QDPLAELVKIDPKA+GVGQYQHDV+ K LEESL VVES VNH Sbjct: 426 PKLDVAERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVAHKRLEESLASVVESVVNH 485 Query: 501 VGVDVNTASASLLSYVAGVNSTIAKNIVKFREENGKFTTRKQLQKVPRLGAKSYEQCIGF 560 VGVD+NTAS SLLS+VAGVN T+A+ IV+FRE GKF R QL+KVPRLG K++EQC+GF Sbjct: 486 VGVDLNTASPSLLSHVAGVNMTVAQKIVEFRENEGKFKNRSQLKKVPRLGPKTFEQCVGF 545 Query: 561 LRIPGGDNTLDRTPIHPESYPVVDRLFRELGLDVASLGSKXXXXXXXXXXXXXXXXKLDV 620 LRI G+NTLD+TPIHPESY V + +E+G + +GS KLD+ Sbjct: 546 LRISDGENTLDKTPIHPESYDQVKKFLKEIGCSMMEVGSGKMKERLKNIVIDEMALKLDI 605 Query: 621 GVPTLRDILESLQRPGRDPREELPPPIFRTDVLKIEDLVPGMEMQGTVRNVIDFGAFVDI 680 G+PTL+DI+ESL++PGRDPREELP PIFRTDVLKIEDL GME++GTVRNV+DFGAFVDI Sbjct: 606 GLPTLKDIIESLEKPGRDPREELPKPIFRTDVLKIEDLQVGMELKGTVRNVVDFGAFVDI 665 Query: 681 GIKNDGLVHISQLSGSYVKHPMDVVSVGDNVTVWVMGVDLKKGRVSLTM 729 G+K DG+VH S+L HPMDV+SVGD VTV V+ VDL++ RV+LT+ Sbjct: 666 GVKVDGMVHKSELGTRRFSHPMDVLSVGDIVTVKVLSVDLERQRVALTL 714 >C1P9H9.1 C1P9H9_BACCO RNA binding S1 domain protein Length = 725 Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/709 (59%), Positives = 540/709 (76%), Gaps = 4/709 (0%) Query: 26 IAKELGISVKQVRTTVGLLDEGNTIPFIARYRKEMTGELDENVLRDIEERLSYLRNLGDR 85 + KEL K +R +GLL++GNT+PFIARYRKEMTG LDE +RDI ER +YL+NL R Sbjct: 16 LGKELQFPEKSIRNVIGLLEDGNTVPFIARYRKEMTGALDEVQIRDIMERWNYLQNLEQR 75 Query: 86 KKDVLRSIEEQGKLTKELQEQILKAVKLQEVEDLYRPFRQKRKTRASAAKEKGLEPLADW 145 K++V+R I+EQGKLT+EL+ +IL+A KLQ VEDLYRP++QKR+TRA+ AKEKGLEPLA W Sbjct: 76 KEEVIRLIDEQGKLTEELKGKILQAEKLQLVEDLYRPYKQKRRTRATIAKEKGLEPLARW 135 Query: 146 VMEQRRQGQPLEEAAKYIDADKGVESAELALQGAMDIIAENIADDPAVRSWVRQYTASQG 205 ++ +G E A Y+ A+K V SAE ALQGA DIIAE ++D+P R W+R T G Sbjct: 136 MLSFPAEGDLDAELAAYVSAEKQVASAEEALQGAKDIIAEMVSDEPKYRGWIRGQTFKTG 195 Query: 206 ILVSEAKDAEQE--SVYENYYNYREPVHKMPPHRILAINRGERENVLKVGIEVTADKIHA 263 ++ S KDAE++ VYE YY Y EPV K+ PHR+LA+NRGE+EN+L+V IE ++I A Sbjct: 196 VMASTVKDAEKDEKKVYEMYYAYEEPVRKIVPHRVLALNRGEKENILRVSIEADTERILA 255 Query: 264 FILRKLVKGPSPVKE-LLEAVTEDAYKRLIAPSVEREVRGEMTEKGETQAIAIFSGNLRS 322 ++ R++++ + + +++ ED YKRLI P++ERE+R E++EK E +AI IF+ NLR+ Sbjct: 256 YLNRQVIRNEASITSGIVKEAVEDGYKRLIEPAIEREIRNELSEKAEDRAIHIFAENLRN 315 Query: 323 LLLQPPVKGRNVLGVDPAYRTGCKLAVVDDTGKLLEVAVTYPTPPNNXXXXXXXXXXXXX 382 LLLQPP+KG+ VLGVDPAYRTGCKLAVVD+TGK+L++ V YP PP Sbjct: 316 LLLQPPLKGKTVLGVDPAYRTGCKLAVVDETGKVLKIGVIYPHPPKPKTEEAKAIVKSII 375 Query: 383 XXYGIQLIVIGNGTGSRETEQFTAEVIAEIGDPGLAYLIVNEAGASVYSASKLAQEEFPD 442 + +++I IGNGT S+ETEQ+ A ++ EI + ++Y+IVNEAGASVYSAS LA++EFPD Sbjct: 376 RDFKVEVIAIGNGTASQETEQWIAGILKEI-EEDVSYVIVNEAGASVYSASDLARKEFPD 434 Query: 443 LDVAERSAASIARRVQDPLAELVKIDPKAIGVGQYQHDVSQKHLEESLKGVVESAVNHVG 502 L V ERSA SIARR+QDPLAELVKIDPK++GVGQYQHDVSQK L ESL VVE+AVN VG Sbjct: 435 LHVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKKLNESLTFVVETAVNQVG 494 Query: 503 VDVNTASASLLSYVAGVNSTIAKNIVKFREENGKFTTRKQLQKVPRLGAKSYEQCIGFLR 562 VDVNTAS SLL YV+G++ST+A NIVKFR+ENGKF R +L+K+PRLGAK+YEQ IGFLR Sbjct: 495 VDVNTASPSLLQYVSGLSSTVAGNIVKFRDENGKFKNRAELKKIPRLGAKTYEQSIGFLR 554 Query: 563 IPGGDNTLDRTPIHPESYPVVDRLFRELGLDVASLGSKXXXXXXXXXXXXXXXXKLDVGV 622 IP G+ LD+TPIHPESY L ELG+ A +G++ L +G Sbjct: 555 IPDGEEPLDKTPIHPESYDAARSLLNELGMTTADIGTEKLIQSLETLSVPEMAKTLGIGE 614 Query: 623 PTLRDILESLQRPGRDPREELPPPIFRTDVLKIEDLVPGMEMQGTVRNVIDFGAFVDIGI 682 TL+DI E+L++PGRDPR+ELP P+ + D++K+EDL PGMEMQGTVRNV+DFGAFVD+G+ Sbjct: 615 LTLQDIFEALKKPGRDPRDELPKPLLKKDIMKLEDLKPGMEMQGTVRNVVDFGAFVDVGV 674 Query: 683 KNDGLVHISQLSGSYVKHPMDVVSVGDNVTVWVMGVDLKKGRVSLTMRP 731 K DGLVHIS+LS +VKHP+D+VSVGD VTVWV VD++KGR+SLTM P Sbjct: 675 KEDGLVHISKLSKGFVKHPLDIVSVGDIVTVWVEKVDVQKGRLSLTMLP 723 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,058,137,191 Number of extensions: 165416680 Number of successful extensions: 425544 Number of sequences better than 1.0e-05: 3245 Number of HSP's gapped: 419344 Number of HSP's successfully gapped: 3754 Length of query: 740 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 596 Effective length of database: 1,704,070,043 Effective search space: 1015625745628 Effective search space used: 1015625745628 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 135 (56.6 bits)