BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0239.0005.p
         (148 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7L7.1 B1D7L7_9BACL Spore coat protein CotH                         140   5e-32
B3KIX5.1 B3KIX5_9BACI Spore coat protein CotH                         112   1e-23
A3DFA7.1 A3DFA7_CLOTH Spore coat assembly protein-like protein         88   3e-16
B1BTM4.1 B1BTM4_CLOPE Putative uncharacterized protein                 87   6e-16
B8I558.1 B8I558_CLOCE Spore coat protein CotH                          86   8e-16

>B1D7L7.1 B1D7L7_9BACL Spore coat protein CotH
          Length = 426

 Score =  140 bits (352), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 83/98 (84%)

Query: 1   VLIDEPTQGALAERPLVAKLLADKEYKAKYHEIIQKMLDGYLQTGTFQARIDELDAMISG 60
           +LIDEPTQ A+A+RPL+AKLLA  EYK KYHE++QK++DGYL    FQAR++EL+ MI+ 
Sbjct: 147 LLIDEPTQSAVADRPLIAKLLAVDEYKEKYHEMLQKIVDGYLSDSQFQARVNELNTMIAS 206

Query: 61  YVKADPSAFYTFEQYESGITAVKTFMATMASNVSQQLD 98
           YVKADPS+FYT+EQYE+G+ ++ +  A+M SN+SQQLD
Sbjct: 207 YVKADPSSFYTYEQYEAGVKSLISTNASMISNISQQLD 244


>B3KIX5.1 B3KIX5_9BACI Spore coat protein CotH
          Length = 685

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 69/98 (70%)

Query: 1   VLIDEPTQGALAERPLVAKLLADKEYKAKYHEIIQKMLDGYLQTGTFQARIDELDAMISG 60
           +LIDEPTQGALAERPL+AKLL   EYK +YH I+ +ML+GY+Q   F+ R+ +L  +IS 
Sbjct: 314 ILIDEPTQGALAERPLIAKLLEVDEYKERYHAILSEMLEGYMQQDHFEERVAQLQELISD 373

Query: 61  YVKADPSAFYTFEQYESGITAVKTFMATMASNVSQQLD 98
           +VK DP  FY++E+YE  +  + +F      N+ QQLD
Sbjct: 374 HVKQDPRPFYSYEEYEQSLPTLTSFAEESMDNIQQQLD 411


>A3DFA7.1 A3DFA7_CLOTH Spore coat assembly protein-like protein
          Length = 709

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 63/96 (65%)

Query: 3   IDEPTQGALAERPLVAKLLADKEYKAKYHEIIQKMLDGYLQTGTFQARIDELDAMISGYV 62
           ID P  G L   PL+ KLL   EYK +YH  ++++++ Y+ +G ++  I+ ++A+IS YV
Sbjct: 454 IDNPVTGNLENAPLIGKLLEVPEYKERYHGYLREIVEKYIYSGVYENSINRINALISDYV 513

Query: 63  KADPSAFYTFEQYESGITAVKTFMATMASNVSQQLD 98
           K D +AFYTFE+Y+ G+ A+ TF    A ++  QL+
Sbjct: 514 KNDATAFYTFEEYQKGVQAILTFGKDRAKSILAQLE 549


>B1BTM4.1 B1BTM4_CLOPE Putative uncharacterized protein
          Length = 679

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 58/96 (60%)

Query: 3   IDEPTQGALAERPLVAKLLADKEYKAKYHEIIQKMLDGYLQTGTFQARIDELDAMISGYV 62
           ID P  G L   PL+ KLL + EYK KYHE ++K+++ Y ++G F   +   D +I  YV
Sbjct: 408 IDSPVTGNLENFPLIGKLLENNEYKEKYHEYLEKIVNEYFKSGVFSTTVTNNDKLIGDYV 467

Query: 63  KADPSAFYTFEQYESGITAVKTFMATMASNVSQQLD 98
           K DP+AFYT+++Y++ I  +  F      +V  QL+
Sbjct: 468 KIDPTAFYTYDEYKNAIKELLVFGEDRTKSVEAQLN 503


>B8I558.1 B8I558_CLOCE Spore coat protein CotH
          Length = 679

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 3   IDEPTQG-ALAERPLVAKLLADKEYKAKYHEIIQKMLDGYLQTGTFQARIDELDAMISGY 61
           ID P  G  ++ERP++ KLL   EYK KYH+ ++ +L+GY+    F + +D+L+++I+GY
Sbjct: 400 IDTPVSGIEMSERPILNKLLEVDEYKEKYHKYLKDILNGYIDNEKFGSTVDKLNSLIAGY 459

Query: 62  VKADPSAFYTFEQYESGITAVKTFMATMASNVSQQLD 98
           VK D +AF+T+++Y +G+  +K F    A ++  QL+
Sbjct: 460 VKNDATAFFTYDKYTAGVAMLKEFGKLRAKSIEGQLN 496


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 515,380,901
Number of extensions: 17352432
Number of successful extensions: 48938
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 48931
Number of HSP's successfully gapped: 26
Length of query: 148
Length of database: 3,060,696,203
Length adjustment: 110
Effective length of query: 38
Effective length of database: 2,024,384,553
Effective search space: 76926613014
Effective search space used: 76926613014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)