BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0239.0003.p (237 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7L4.1 B1D7L4_9BACL Putative uncharacterized protein 380 e-104 B3KIX7.1 B3KIX7_9BACI Putative uncharacterized protein 362 1e-98 Q8ENH0.1 Q8ENH0_OCEIH Putative uncharacterized protein OB2513 283 7e-75 A3DFA9.1 A3DFA9_CLOTH Putative uncharacterized protein 202 2e-50 B4BDD2.1 B4BDD2_CLOTM Putative uncharacterized protein 202 2e-50 >B1D7L4.1 B1D7L4_9BACL Putative uncharacterized protein Length = 236 Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/234 (77%), Positives = 204/234 (87%) Query: 4 KLQFRHELKFFINHHQYLILRQRLKSLIDADQNADDSGEYHIRSLYFDDISNTALADKLG 63 K++FR+ELKFFINH QY +RQRL++L+ D++A +GEYHIRSLYFDD SNTAL DKLG Sbjct: 3 KIKFRNELKFFINHLQYFTIRQRLRNLMQPDEHAGSTGEYHIRSLYFDDFSNTALNDKLG 62 Query: 64 GLRERAKYRIRIYNVQDNVIHFEKKIKMDDYIAKIKEPLTREMYNRIMAGNYEALNVPDR 123 G R+R KYRIRIYN QD VIHFEKK+K DYIAK+KEPLTREMYNRIMAG+YE LNVPD+ Sbjct: 63 GFRDRKKYRIRIYNGQDKVIHFEKKLKRMDYIAKLKEPLTREMYNRIMAGDYEVLNVPDK 122 Query: 124 PLFMELYNQMRHNLLRPKVIVDYVREPYVCHNGNVRITFDKELRTGLHSTDIFSKELKPV 183 PL ME+YN+M NLLRPKVIVDYVREPYVCHNGNVRITFDK+LRTGLH+ DIF EL PV Sbjct: 123 PLLMEIYNEMHDNLLRPKVIVDYVREPYVCHNGNVRITFDKDLRTGLHAVDIFDPELAPV 182 Query: 184 RALDENFIIFEVKFDEYIPEYIRIALQLNGLNRQSASKYVICRKFLKTNIWEDY 237 +A+DE+ II EVKFDEYIP YI+ ALQL GLNRQSASKYVICRKFLK N WEDY Sbjct: 183 KAIDEDLIILEVKFDEYIPGYIQTALQLEGLNRQSASKYVICRKFLKYNSWEDY 236 >B3KIX7.1 B3KIX7_9BACI Putative uncharacterized protein Length = 237 Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 171/236 (72%), Positives = 203/236 (86%) Query: 1 MNKKLQFRHELKFFINHHQYLILRQRLKSLIDADQNADDSGEYHIRSLYFDDISNTALAD 60 M L++R+ELKFF+N HQY I+ QRLK+L+ DQ+A +GEYHIRSLYFDDI+N AL + Sbjct: 1 MTTPLKYRNELKFFVNLHQYRIISQRLKNLVTYDQHAGPAGEYHIRSLYFDDINNKALYE 60 Query: 61 KLGGLRERAKYRIRIYNVQDNVIHFEKKIKMDDYIAKIKEPLTREMYNRIMAGNYEALNV 120 KL G+R+R KYRIRIYNV D+ IHFEKKIK DYIAK+KEPLTREM ++IMAG Y+ L Sbjct: 61 KLAGVRDRVKYRIRIYNVADDTIHFEKKIKFRDYIAKLKEPLTREMTDQIMAGQYDCLYQ 120 Query: 121 PDRPLFMELYNQMRHNLLRPKVIVDYVREPYVCHNGNVRITFDKELRTGLHSTDIFSKEL 180 PD+PL MELY++M+H LLRPKVIVDYVREPYVC NGNVRITFDKELRTGLHST++F++ L Sbjct: 121 PDKPLMMELYHEMKHKLLRPKVIVDYVREPYVCANGNVRITFDKELRTGLHSTELFNRNL 180 Query: 181 KPVRALDENFIIFEVKFDEYIPEYIRIALQLNGLNRQSASKYVICRKFLKTNIWED 236 P+RA+DEN II EVK+DEYIP+YI+IALQL GLNRQSASKYV+CRKFLK N WED Sbjct: 181 LPIRAIDENLIILEVKYDEYIPDYIKIALQLEGLNRQSASKYVMCRKFLKYNTWED 236 >Q8ENH0.1 Q8ENH0_OCEIH Putative uncharacterized protein OB2513 Length = 236 Score = 283 bits (725), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 136/232 (58%), Positives = 174/232 (75%) Query: 5 LQFRHELKFFINHHQYLILRQRLKSLIDADQNADDSGEYHIRSLYFDDISNTALADKLGG 64 ++FRHE K+++N+HQY ++RQRL LI D++A+D G+YHIRS+YFDD N AL +K G Sbjct: 4 VKFRHEQKYYVNYHQYYLIRQRLGILIRRDEHANDEGDYHIRSVYFDDFENKALQEKQAG 63 Query: 65 LRERAKYRIRIYNVQDNVIHFEKKIKMDDYIAKIKEPLTREMYNRIMAGNYEALNVPDRP 124 + R K+RIR+YN D++IH EKKIK + +IAK K ++R M + ++ G++EA+ P Sbjct: 64 IENRHKFRIRMYNKSDDIIHLEKKIKRNTWIAKEKVSISRRMVDDLLHGDFEAIADEKSP 123 Query: 125 LFMELYNQMRHNLLRPKVIVDYVREPYVCHNGNVRITFDKELRTGLHSTDIFSKELKPVR 184 L E+Y +M+H LLRPKVIVDYVRE YV GNVRITFDK+LRT L+ + F +LKPVR Sbjct: 124 LLQEIYLEMKHRLLRPKVIVDYVREAYVARTGNVRITFDKDLRTSLNKINPFDIDLKPVR 183 Query: 185 ALDENFIIFEVKFDEYIPEYIRIALQLNGLNRQSASKYVICRKFLKTNIWED 236 ALDE I EVKFDEYIP YI ALQLNGL RQSASKY ICRK++K N WED Sbjct: 184 ALDEPVYILEVKFDEYIPRYISQALQLNGLQRQSASKYTICRKYMKANTWED 235 >A3DFA9.1 A3DFA9_CLOTH Putative uncharacterized protein Length = 228 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 146/226 (64%) Query: 3 KKLQFRHELKFFINHHQYLILRQRLKSLIDADQNADDSGEYHIRSLYFDDISNTALADKL 62 +K++FRHE+K +IN L+LR++L+ ++ D NA G Y +RSLYFD ++ AL +K+ Sbjct: 2 EKVKFRHEIKHYINAGDCLLLRRKLRCVMKTDSNAGPDGSYLVRSLYFDTPADKALMEKI 61 Query: 63 GGLRERAKYRIRIYNVQDNVIHFEKKIKMDDYIAKIKEPLTREMYNRIMAGNYEALNVPD 122 G+ R K RIR+YN D+ I EKKIK++ AK +T+E I+ GN E + D Sbjct: 62 DGVDNREKIRIRLYNHDDSFIKLEKKIKVNGLTAKFSANITKEQCKDILNGNIEWMKNSD 121 Query: 123 RPLFMELYNQMRHNLLRPKVIVDYVREPYVCHNGNVRITFDKELRTGLHSTDIFSKELKP 182 PL +E+Y++M H L+P+ IVDY+RE YV + GNVR+T DK +RTGL S D+F++EL Sbjct: 122 DPLVVEIYHKMLHQQLKPRTIVDYIREAYVYNPGNVRVTIDKSIRTGLVSNDLFNRELPT 181 Query: 183 VRALDENFIIFEVKFDEYIPEYIRIALQLNGLNRQSASKYVICRKF 228 V L + EVK+DE++PE I LQ+ + S SKY +CR + Sbjct: 182 VETLPRQLALLEVKYDEFLPEIINDILQIGDRQKLSVSKYALCRMY 227 >B4BDD2.1 B4BDD2_CLOTM Putative uncharacterized protein Length = 228 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 146/226 (64%) Query: 3 KKLQFRHELKFFINHHQYLILRQRLKSLIDADQNADDSGEYHIRSLYFDDISNTALADKL 62 +K++FRHE+K +IN L+LR++L+ ++ D NA G Y +RSLYFD ++ AL +K+ Sbjct: 2 EKVKFRHEIKHYINAGDCLLLRRKLRCVMKTDSNAGPDGSYLVRSLYFDTPADKALMEKI 61 Query: 63 GGLRERAKYRIRIYNVQDNVIHFEKKIKMDDYIAKIKEPLTREMYNRIMAGNYEALNVPD 122 G+ R K RIR+YN D+ I EKKIK++ AK +T+E I+ GN E + D Sbjct: 62 DGVDNREKIRIRLYNHDDSFIKLEKKIKVNGLTAKFSANITKEQCKDILNGNIEWMKNSD 121 Query: 123 RPLFMELYNQMRHNLLRPKVIVDYVREPYVCHNGNVRITFDKELRTGLHSTDIFSKELKP 182 PL +E+Y++M H L+P+ IVDY+RE YV + GNVR+T DK +RTGL S D+F++EL Sbjct: 122 DPLVVEIYHKMLHQQLKPRTIVDYIREAYVYNPGNVRVTIDKSIRTGLVSNDLFNRELPT 181 Query: 183 VRALDENFIIFEVKFDEYIPEYIRIALQLNGLNRQSASKYVICRKF 228 V L + EVK+DE++PE I LQ+ + S SKY +CR + Sbjct: 182 VETLPRQLALLEVKYDEFLPEIINDILQIGDRQKLSVSKYALCRMY 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,374,196,455 Number of extensions: 56491657 Number of successful extensions: 168081 Number of sequences better than 1.0e-05: 78 Number of HSP's gapped: 168042 Number of HSP's successfully gapped: 78 Length of query: 237 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 105 Effective length of database: 1,817,122,223 Effective search space: 190797833415 Effective search space used: 190797833415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)