BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0239.0002.p (248 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIX6.1 B3KIX6_9BACI Putative uncharacterized protein 335 2e-90 B1D7L5.1 B1D7L5_9BACL Putative uncharacterized protein 333 1e-89 Q8ENH1.1 Q8ENH1_OCEIH Putative uncharacterized protein OB2512 254 7e-66 B2UXA5.1 B2UXA5_CLOBA Tubulin/FtsZ, GTPase 221 5e-56 B2THU9.1 B2THU9_CLOBB Tubulin/FtsZ, GTPase 220 8e-56 >B3KIX6.1 B3KIX6_9BACI Putative uncharacterized protein Length = 236 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 162/222 (72%), Positives = 190/222 (85%) Query: 27 FSDIIKNSVIDNFVSDISISKILITLAVAFLIGFFIYLLYKRVFSGVLYSKSFNVSLMGX 86 FSDI+K SV++NFVSDISI+KILITLAVAF+IG FIYLLYKRVFSGVLYSKSFNVSL+G Sbjct: 15 FSDIVKKSVMENFVSDISIAKILITLAVAFVIGLFIYLLYKRVFSGVLYSKSFNVSLIGM 74 Query: 87 XXXXXXXXXXXNSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIVTGAGFFTL 146 NSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIVTGAGF+TL Sbjct: 75 TMITAVVIIAINSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIVTGAGFYTL 134 Query: 147 AIAGSVIIGLILFLFIKNSSVETPYLLVINCEGDDSERAVHSHLSKSVKRYNVKQKTVTA 206 A GSV++GLILF FIK ++V+TPYLLV++C+ + +E+AV + ++VKRYN+KQKTVT Sbjct: 135 AAIGSVVVGLILFFFIKKATVDTPYLLVVHCDNEQAEQAVQGQVGQAVKRYNLKQKTVTP 194 Query: 207 GNIELTLELRLNDKEGSFVNTVSDISGVNNALLISYSGDYVS 248 G+IELTLE+RL D EG FVN +S + GV +A+LISYSGDYVS Sbjct: 195 GSIELTLEVRLRDAEGQFVNKLSQLQGVQHAVLISYSGDYVS 236 >B1D7L5.1 B1D7L5_9BACL Putative uncharacterized protein Length = 235 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 163/222 (73%), Positives = 186/222 (83%) Query: 27 FSDIIKNSVIDNFVSDISISKILITLAVAFLIGFFIYLLYKRVFSGVLYSKSFNVSLMGX 86 FSD+ K+SV+DNF S I ISK+LITLA++FLIG FIY LYKR+FSGVLYSKSFNVSL+G Sbjct: 14 FSDLFKSSVLDNFNSSIDISKMLITLAISFLIGLFIYTLYKRIFSGVLYSKSFNVSLIGM 73 Query: 87 XXXXXXXXXXXNSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIVTGAGFFTL 146 NSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAA AGIVTGAGFFTL Sbjct: 74 TIITSVVILAVNSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAAAGIVTGAGFFTL 133 Query: 147 AIAGSVIIGLILFLFIKNSSVETPYLLVINCEGDDSERAVHSHLSKSVKRYNVKQKTVTA 206 A+ GSVIIGL+LFLF+K VE PYLLV+ C D+SE+AV + K VKRYNVKQKTV+A Sbjct: 134 AVVGSVIIGLVLFLFVKGGKVENPYLLVVQCANDESEKAVQQQVGKMVKRYNVKQKTVSA 193 Query: 207 GNIELTLELRLNDKEGSFVNTVSDISGVNNALLISYSGDYVS 248 GNIE+TLE+RLND+EG FVN +S I+GV NA+LISY+GDYVS Sbjct: 194 GNIEVTLEVRLNDQEGRFVNELSQIAGVRNAVLISYNGDYVS 235 >Q8ENH1.1 Q8ENH1_OCEIH Putative uncharacterized protein OB2512 Length = 233 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 133/230 (57%), Positives = 174/230 (75%), Gaps = 2/230 (0%) Query: 21 ADTTNT--FSDIIKNSVIDNFVSDISISKILITLAVAFLIGFFIYLLYKRVFSGVLYSKS 78 ++TTN+ +SDI + V+ NF +DIS+ +I IT++++FL+G FIY LYKRVFSGVLYSK+ Sbjct: 4 SETTNSVNWSDIFNSEVLSNFNTDISLIEIGITMSISFLLGLFIYFLYKRVFSGVLYSKN 63 Query: 79 FNVSLMGXXXXXXXXXXXXNSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIV 138 FN+SL+ SNL+LSLGMVGALSIVRFRTPIKDP+DLIFLFWA GI+ Sbjct: 64 FNISLIALSMITSLIIMAIGSNLILSLGMVGALSIVRFRTPIKDPSDLIFLFWALAVGII 123 Query: 139 TGAGFFTLAIAGSVIIGLILFLFIKNSSVETPYLLVINCEGDDSERAVHSHLSKSVKRYN 198 TGAGF+ L+I GS+IIGL+LFL +K S++ETPYL V+N +E+ V L VKR+N Sbjct: 124 TGAGFYKLSIIGSIIIGLVLFLSMKKSNLETPYLFVVNVTDHQAEQKVFEQLKSEVKRFN 183 Query: 199 VKQKTVTAGNIELTLELRLNDKEGSFVNTVSDISGVNNALLISYSGDYVS 248 +K K++TA E+T+E+RL E SFVN++SDI GV NA+LISY+GDYV Sbjct: 184 IKHKSITANETEMTIEVRLKGSEPSFVNSISDIQGVGNAVLISYNGDYVQ 233 >B2UXA5.1 B2UXA5_CLOBA Tubulin/FtsZ, GTPase Length = 229 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 112/228 (49%), Positives = 155/228 (67%), Gaps = 2/228 (0%) Query: 22 DTTNTFSDIIKNSVIDNFVSDISISKILITLAVAFLIGFFIYLLYKRVFSGVLYSKSFNV 81 TT FSDI K+S + ++ +S + I LA+AF+IG FI +YK+ F GV+YS+SF + Sbjct: 3 QTTTNFSDIFKSSFAEK-LTQVSFLDMFIALALAFVIGLFIMQVYKKTFKGVMYSESFAI 61 Query: 82 SLMGXXXXXXXXXXXXNSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIVTGA 141 SL+ SN+VLSLGMVGALSIVRFR+ IK+P D+ FLFW+ GIV GA Sbjct: 62 SLLALSLITTLIILAVTSNVVLSLGMVGALSIVRFRSAIKEPIDIAFLFWSISVGIVIGA 121 Query: 142 GFFTLAIAGSVIIGLILFLFIKNSSVETPYLLVINCEGDDSERAVHSHLSKSVKRYNVKQ 201 G LAI GS+ IG+++ LF+ + PY+LVINCE DDSE LSK+V +YNVK Sbjct: 122 GLIPLAILGSIFIGIVMILFVNKKTSNNPYILVINCEDDDSENTALKMLSKNVDKYNVKS 181 Query: 202 KTVTAGN-IELTLELRLNDKEGSFVNTVSDISGVNNALLISYSGDYVS 248 KT++ N IE+T+E+ L K FVN++S ++G++N +L+SY+GDY+S Sbjct: 182 KTISPVNGIEMTVEIGLKKKSTDFVNSISKLNGISNVVLVSYNGDYMS 229 >B2THU9.1 B2THU9_CLOBB Tubulin/FtsZ, GTPase Length = 229 Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 112/228 (49%), Positives = 155/228 (67%), Gaps = 2/228 (0%) Query: 22 DTTNTFSDIIKNSVIDNFVSDISISKILITLAVAFLIGFFIYLLYKRVFSGVLYSKSFNV 81 TT FSDI K+S + ++ +S + I LA+AF+IG FI +YK+ F GV+YS+SF + Sbjct: 3 QTTTNFSDIFKSSFAEK-LTQVSFLDMFIALALAFVIGLFIMQVYKKTFKGVMYSESFAI 61 Query: 82 SLMGXXXXXXXXXXXXNSNLVLSLGMVGALSIVRFRTPIKDPTDLIFLFWAAVAGIVTGA 141 SL+ SN+VLSLGMVGALSIVRFR+ IK+P D+ FLFW+ GIV GA Sbjct: 62 SLLALSLITTLIILAVTSNVVLSLGMVGALSIVRFRSAIKEPIDIAFLFWSISVGIVIGA 121 Query: 142 GFFTLAIAGSVIIGLILFLFIKNSSVETPYLLVINCEGDDSERAVHSHLSKSVKRYNVKQ 201 G LA+ GS+ IG+++ LFI + PY+LVINCE DDSE LSK+V +YNVK Sbjct: 122 GLIPLAVLGSIFIGIVMVLFINKKTSNNPYILVINCEDDDSENTALKVLSKNVDKYNVKS 181 Query: 202 KTVTAGN-IELTLELRLNDKEGSFVNTVSDISGVNNALLISYSGDYVS 248 KT++ N IE+T+E+ L K FVN++S ++G++N +L+SY+GDY+S Sbjct: 182 KTISPMNGIEMTVEIGLKKKSTDFVNSISKLNGISNVVLVSYNGDYMS 229 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,185,551,989 Number of extensions: 44488976 Number of successful extensions: 150652 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 150605 Number of HSP's successfully gapped: 97 Length of query: 248 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 116 Effective length of database: 1,817,122,223 Effective search space: 210786177868 Effective search space used: 210786177868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)