BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0239.0001.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIX5.1 B3KIX5_9BACI Spore coat protein CotH 423 e-116 Q8ENH2.1 Q8ENH2_OCEIH Hypothetical conserved protein 261 9e-68 Q0AUY3.1 Q0AUY3_SYNWW Putative uncharacterized protein 246 2e-63 B1D7L6.1 B1D7L6_9BACL Putative uncharacterized protein 237 1e-60 Q18AM0.1 Q18AM0_CLOD6 Putative membrane protein 234 1e-59 >B3KIX5.1 B3KIX5_9BACI Spore coat protein CotH Length = 685 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/289 (71%), Positives = 240/289 (83%), Gaps = 5/289 (1%) Query: 32 GCQTINPSADNNSTTTDTQNKQANEQSLDTEVFPKDRVVDVKITMKPDDFQDMLDHASAE 91 GCQ A T ++N EQ +D+ VFPKD+V+DVKIT+ DFQDMLD+ASAE Sbjct: 22 GCQRTTQVA---GTAGSSENDGLQEQ-IDSAVFPKDKVIDVKITIDEADFQDMLDNASAE 77 Query: 92 EYKEASVEYGGIKLDHVGVRTKGNLSLRSVVQMSDSDRYSFKLSFDEYVNQNLLGISKIN 151 EYKEASV Y G++ DHVG+RTKGNLSLRSVV SDSDRYSFK+SFDEY+NQ L GISKIN Sbjct: 78 EYKEASVNYNGMQFDHVGIRTKGNLSLRSVVN-SDSDRYSFKISFDEYLNQTLNGISKIN 136 Query: 152 LNNNYSDASYMREFLTYELAESIGLPTPKYSFVNIYVNDELKGFYLAVEQIGDAYLERNF 211 LNNNYSDASYMREFLTYELAES+GLPTP +S+VN+YVNDEL GFYLA+EQIGD+YL+R+F Sbjct: 137 LNNNYSDASYMREFLTYELAESVGLPTPGFSYVNVYVNDELWGFYLAIEQIGDSYLQRHF 196 Query: 212 GNSYGALYKGVMTGQGSDLTWLGDDASLYTGLEMKSEKSNDDIVVDMLDELNNGTDVEKY 271 +SYGALYK MTG GSDL+WLG D YTGL MKS+ SNDD+++DMLDELNNGTD EK Sbjct: 197 DHSYGALYKAQMTGSGSDLSWLGSDPDSYTGLVMKSKSSNDDVLIDMLDELNNGTDYEKV 256 Query: 272 INIDDALGYIALNAVTGNMDSYLGGNKQNYYLYEDEGVFSILPWDYNMA 320 +N+D+ L Y+ALN V NMDSYLG NKQNYYLYE+ G+FS+LPWDYNMA Sbjct: 257 LNVDNVLKYVALNVVASNMDSYLGMNKQNYYLYENNGIFSVLPWDYNMA 305 >Q8ENH2.1 Q8ENH2_OCEIH Hypothetical conserved protein Length = 529 Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 144/312 (46%), Positives = 195/312 (62%), Gaps = 22/312 (7%) Query: 13 RAESFLLIICGLVLAITIAGCQTINPSADNNSTTTDTQNKQANEQSLDTEVFPKDRVVDV 72 R + F+L+ L+ + INP++ A +Q+ D ++F +D + +V Sbjct: 7 RKKMFILLTITLMTMFSY----RINPAS-------------AADQNTD-KIFQQDEISEV 48 Query: 73 KITMKPDDFQDMLDHASAEEYKEASVEYGGIKLDHVGVRTKGNLSLRSVVQMSDSDRYSF 132 I + DFQ MLD+ EEY+ ASV Y G +++ GVR KGN SLRSV S+SDRYSF Sbjct: 49 NIELDEQDFQSMLDNPMEEEYQVASVTYNGQTIENTGVRVKGNSSLRSVAS-SESDRYSF 107 Query: 133 KLSFDEYVNQNLLGISKINLNNNYSDASYMREFLTYELAESIGLPTPKYSFVNIYVNDEL 192 KL FDEY++Q+L G +KINLNNN++D SYMRE+LTYEL E +GLPTP YS+VN+YVN E Sbjct: 108 KLKFDEYIDQDLEGYTKINLNNNFADPSYMREYLTYELMEKMGLPTPNYSYVNVYVNGEH 167 Query: 193 KGFYLAVEQIGDAYLERNFGNSYGALYKGVMTGQGSDLTWLGDDASLYTGLEMKSEKSND 252 GFYLAVE I + YL+RNF ++ G LYK G+ L W T L +K + Sbjct: 168 YGFYLAVENIEENYLDRNFNDTSGNLYKA---DSGASLIWEEGMEVEDTSLNLKIGLEGN 224 Query: 253 DIVVDMLDELNNGTDVEKYINIDDALGYIALNAVTGNMDSYLGGNKQNYYLYEDEGVFSI 312 ++ ++ LN G VE Y ++D L Y+A++ V NMDSY G NYYLYE +G F+ Sbjct: 225 TSLLSFIEGLNTGEKVEDYFDVDTYLRYLAVSTVVANMDSYQGMMSHNYYLYEQDGKFTF 284 Query: 313 LPWDYNMAFGGM 324 LPWD+NM+F GM Sbjct: 285 LPWDHNMSFAGM 296 >Q0AUY3.1 Q0AUY3_SYNWW Putative uncharacterized protein Length = 611 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 124/310 (40%), Positives = 202/310 (65%), Gaps = 15/310 (4%) Query: 19 LIICGLVLAITIAGCQTINPSADNNSTTTDTQNKQANEQSLDTEVFPKDRVVDVKITMKP 78 L++ + LA+ A T+ P +++ E +++F K++++++ I M+P Sbjct: 15 LVLILMSLAVLAASFLTLYPHHPDSAAPA--------EPEYASKLFNKEQIMEINIEMEP 66 Query: 79 DDFQDMLDHASAEEYKEASVEYGGIKLDHVGVRTKGNLSLRSVVQMSDSDRYSFKLSFDE 138 +DF ++++A+ EEY++A + G +VG+R KGN SLR V Q +SDR+SFK+ FD Sbjct: 67 EDFDWIIENATREEYRQADITINGNTYHNVGIRPKGNSSLRMVAQDKNSDRFSFKVKFDA 126 Query: 139 YVN-QNLLGISKINLNNNYSDASYMREFLTYELAESIGLPTPKYSFVNIYVNDELKGFYL 197 YV Q +G++K+ LNN D +YM+E+L YE+ + +G+ TPKY++ NI +N + G YL Sbjct: 127 YVEGQACMGLNKLALNNIIMDKTYMKEYLAYEIFDYMGVVTPKYAYANISINSKPWGLYL 186 Query: 198 AVEQIGDAYLERNFGNSYGALYKGVMTGQGSDLTWLGDDASLYTGLEMKSEKSNDDI--- 254 AVE + +++++RN+G+ G LY+ G GSDL W G+DA+ YTG+ + + D Sbjct: 187 AVEAMEESFVKRNYGSLEGHLYRP--EGAGSDLKWAGEDAANYTGIRKMAAYNVTDSDFK 244 Query: 255 -VVDMLDELNNGTDVEKYINIDDALGYIALNAVTGNMDSYLGGNKQNYYLYEDEGVFSIL 313 ++ M+++LNNG+++EKY++ID L Y A+N+ N DSY+G K NYYLYE+ GV +IL Sbjct: 245 KIITMIEQLNNGSELEKYLDIDSILRYFAVNSFLVNFDSYVGSLKHNYYLYEENGVCTIL 304 Query: 314 PWDYNMAFGG 323 PWD+N+AF G Sbjct: 305 PWDFNLAFAG 314 >B1D7L6.1 B1D7L6_9BACL Putative uncharacterized protein Length = 186 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/186 (63%), Positives = 143/186 (76%), Gaps = 4/186 (2%) Query: 10 MKARAESFLLIICGLVLAITIAGCQTINPSADNNSTTTDTQNKQANEQSLDTEVFPKDRV 69 MKA+ FLL + ++L I + GC + P+A+N + + + EQ LD VFPK++V Sbjct: 1 MKAK---FLLTLFSIILIIGLTGCGS-KPTANNEGESAENKATTKEEQFLDETVFPKNKV 56 Query: 70 VDVKITMKPDDFQDMLDHASAEEYKEASVEYGGIKLDHVGVRTKGNLSLRSVVQMSDSDR 129 VDVKIT+ D FQD++D+ASAEEY ASV+Y G D+VG+R KGNLSLRSVVQM DSDR Sbjct: 57 VDVKITIDEDQFQDIIDNASAEEYHTASVDYNGEHFDNVGIRAKGNLSLRSVVQMEDSDR 116 Query: 130 YSFKLSFDEYVNQNLLGISKINLNNNYSDASYMREFLTYELAESIGLPTPKYSFVNIYVN 189 YSFK+SFDEYVNQ L GISKINLNNNYSDASYMREFLTYELAE +GLPTPK+SFVN+YVN Sbjct: 117 YSFKISFDEYVNQTLGGISKINLNNNYSDASYMREFLTYELAEQMGLPTPKFSFVNVYVN 176 Query: 190 DELKGF 195 + G Sbjct: 177 XQAMGL 182 >Q18AM0.1 Q18AM0_CLOD6 Putative membrane protein Length = 635 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/259 (47%), Positives = 175/259 (67%), Gaps = 7/259 (2%) Query: 64 FPKDRVVDVKITMKPDDFQDMLDHASAEEYKEASVEYGGIKLDHVGVRTKGNLSLRSVVQ 123 F +D+V++V I + D +DM ++A EE+K A V G +VG+RTKGN SL SV Sbjct: 44 FNRDKVMEVNIEIDESDLKDMNENAIKEEFKVAKVTVDGDTYGNVGIRTKGNSSLISVAN 103 Query: 124 MSDSDRYSFKLSFDEY-VNQNLLGISKINLNNNYSDASYMREFLTYELAESIGLPTPKYS 182 SDSDRYS+K++FD+Y +Q++ G++++NLNN YSD SYMREFLTY + E +GL TP+++ Sbjct: 104 -SDSDRYSYKINFDKYNTSQSMEGLTQLNLNNCYSDPSYMREFLTYSICEEMGLATPEFA 162 Query: 183 FVNIYVNDELKGFYLAVEQIGDAYLERNFGNSYGALYKGVMTGQGSDLTWLGDDASLYTG 242 + + +N E G YLAVE + ++YLE NFGN G LYK + +GS L + GDD Y+ Sbjct: 163 YAKVSINGEYHGLYLAVEGLKESYLENNFGNVTGDLYK---SDEGSSLQYKGDDPESYSN 219 Query: 243 LEMKSEKSNDD--IVVDMLDELNNGTDVEKYINIDDALGYIALNAVTGNMDSYLGGNKQN 300 L ++S+K D + +L L+ G D+EKY+++D L IA+N N+DSY G N Sbjct: 220 LIVESDKKTADWSKITKLLKSLDTGEDIEKYLDVDSVLKNIAINTALLNLDSYQGSFAHN 279 Query: 301 YYLYEDEGVFSILPWDYNM 319 YYLYE +GVFS+LPWD+NM Sbjct: 280 YYLYEQDGVFSMLPWDFNM 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,047,062,217 Number of extensions: 91624810 Number of successful extensions: 195208 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 195005 Number of HSP's successfully gapped: 176 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)