BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0238.0003.p (429 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5E2.1 B1D5E2_9BACL Putative uncharacterized protein 711 0.0 B1RNW3.1 B1RNW3_CLOPE Putative uncharacterized protein 467 e-130 B1BNN4.1 B1BNN4_CLOPE Putative uncharacterized protein 467 e-129 B1V0S3.1 B1V0S3_CLOPE Putative uncharacterized protein 467 e-129 B3KGE9.1 B3KGE9_9BACI Putative uncharacterized protein 467 e-129 >B1D5E2.1 B1D5E2_9BACL Putative uncharacterized protein Length = 441 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/429 (77%), Positives = 369/429 (86%) Query: 1 MPELTLPQAVQEVLAEAEKKLAHRPKLLQLFKNCFPNTLETTTKLLDDGTTFIITGDIPA 60 MP L LPQ+VQ VLAEAE +LAHRPKLLQLFKNCFPNTLETTTKLL+DGTTF+ITGDIPA Sbjct: 11 MPHLPLPQSVQAVLAEAETRLAHRPKLLQLFKNCFPNTLETTTKLLNDGTTFVITGDIPA 70 Query: 61 SWLRDSVEQVIHYVPLAKNDPDLQRIIGGLIKRHIQYIHIDPYANAFNESANDWHWNTTD 120 WLRDSVEQV+HYVP AK+D DLQRIIGGLIK H++ I IDPYANAFNE ANDWHWNT D Sbjct: 71 MWLRDSVEQVMHYVPFAKDDADLQRIIGGLIKLHMRNIVIDPYANAFNEMANDWHWNTDD 130 Query: 121 VTEMSPWVWERKFEIDSLCFVVRLAYTYWKETGVTDFFNAEFKSALRTIIDLFRREQRHF 180 T+MSPWVWERKFE+DS+CF +RLA+ YWKETG D F+A+FK A+R +DL++REQ HF Sbjct: 131 KTDMSPWVWERKFELDSICFSMRLAFAYWKETGRADIFDADFKVAMRAAVDLWKREQHHF 190 Query: 181 EQSPYRFTRNNGIPEDSLRNKGLGMPVNYTGMIWSGFRSSDDACDFHYNIPGNMFAVVAL 240 E+SPYRF R+NGI DSL N G+GMPVNYTGMIWSGFR SDDACDFHYNIP NMFAVV L Sbjct: 191 ERSPYRFERDNGIMTDSLMNDGIGMPVNYTGMIWSGFRPSDDACDFHYNIPDNMFAVVTL 250 Query: 241 RQMQEFAEWVFRDMDLLAELKELEFEVDYGIKLYGIYRHPEFGPIYAYETDGFGNYCLMD 300 RQM+E AE+VFRD+ E+ +LE E+++GI+LYGIYRHPEFGPIYAYETDGFGNYCLMD Sbjct: 251 RQMREIAEFVFRDLSFEKEMAQLEREINHGIQLYGIYRHPEFGPIYAYETDGFGNYCLMD 310 Query: 301 DAGTPGLISIPYLGYTTADDLIYQNTRRFALSKENPFYYEGTAAKGIGSPHTPKDYIWHM 360 DAGTPGLISIPYLGY DD IYQNTRRFALSKENPFYYEGTAAKGIGSPHTP YIWHM Sbjct: 311 DAGTPGLISIPYLGYVDGDDPIYQNTRRFALSKENPFYYEGTAAKGIGSPHTPPGYIWHM 370 Query: 361 ALSMQGITAQSXXXXXXXXXXXXNTDADTGFMHEGFHADDPSVFTRSWFAWSNSLFSQLV 420 ALSMQG+TA++ TDADTGFMHEGFH+DDP+VFTR WFAWSNSLFSQLV Sbjct: 371 ALSMQGLTAKTDEEMLDMIAVLEATDADTGFMHEGFHSDDPAVFTRKWFAWSNSLFSQLV 430 Query: 421 YRMMKDGQL 429 Y+ MK G L Sbjct: 431 YKAMKAGLL 439 >B1RNW3.1 B1RNW3_CLOPE Putative uncharacterized protein Length = 427 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/419 (54%), Positives = 285/419 (68%), Gaps = 3/419 (0%) Query: 6 LPQAVQEVLAEAEKKLAHRPKLLQLFKNCFPNTLETTTKLLDDGTTFIITGDIPASWLRD 65 L + V+++ + K+ + KL +LF NCF NT++TT ++ +G F+ITGDIPA WLRD Sbjct: 8 LKEIVRKIGKDLSAKIEDK-KLQELFYNCFINTMDTTVEV-SEGDAFVITGDIPAMWLRD 65 Query: 66 SVEQVIHYVPLAKNDPDLQRIIGGLIKRHIQYIHIDPYANAFNESANDWHWNTTDVTEMS 125 S QV HY+P K P+L+ I GLI R I+ I IDPYANAFN+ N W+ D+T+ S Sbjct: 66 STSQVEHYLPFVKEYPELKAIFTGLINRQIKCIFIDPYANAFNKEPNGQKWDN-DITKDS 124 Query: 126 PWVWERKFEIDSLCFVVRLAYTYWKETGVTDFFNAEFKSALRTIIDLFRREQRHFEQSPY 185 PWVWERK+EIDSLC+ VRL + YWKE+G FFN + K A IIDL+R EQ H E+S Y Sbjct: 125 PWVWERKYEIDSLCYPVRLIHKYWKESGDETFFNDDIKKAFNMIIDLWRVEQYHREKSDY 184 Query: 186 RFTRNNGIPEDSLRNKGLGMPVNYTGMIWSGFRSSDDACDFHYNIPGNMFAVVALRQMQE 245 F R N D+L ++GLG PV YTGM WSGFR SDDAC++ Y IP NMFAVVALR + E Sbjct: 185 SFQRLNCSVTDTLSHEGLGTPVTYTGMTWSGFRPSDDACEYGYLIPANMFAVVALRYISE 244 Query: 246 FAEWVFRDMDLLAELKELEFEVDYGIKLYGIYRHPEFGPIYAYETDGFGNYCLMDDAGTP 305 AE V++D +L + L E+D I+ +G FG +YAYETDG GNY MDDA P Sbjct: 245 IAEKVYKDEELKEKADSLREEIDNAIEKHGKVYKEGFGEVYAYETDGMGNYNFMDDANVP 304 Query: 306 GLISIPYLGYTTADDLIYQNTRRFALSKENPFYYEGTAAKGIGSPHTPKDYIWHMALSMQ 365 L+SIPYL Y +D +YQNTR+F LSK N F++EG AAKGIGSPHTP YIWH+ALSMQ Sbjct: 305 SLLSIPYLEYKGIEDEVYQNTRKFILSKNNRFFFEGKAAKGIGSPHTPDQYIWHIALSMQ 364 Query: 366 GITAQSXXXXXXXXXXXXNTDADTGFMHEGFHADDPSVFTRSWFAWSNSLFSQLVYRMM 424 G+T + TDA TG+MHEGFH DDP+ FTR WFAWSNSLFS +Y + Sbjct: 365 GLTTNNQEEIEELIKLLKETDAGTGYMHEGFHVDDPAKFTRDWFAWSNSLFSHFIYEKV 423 >B1BNN4.1 B1BNN4_CLOPE Putative uncharacterized protein Length = 427 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/419 (54%), Positives = 285/419 (68%), Gaps = 3/419 (0%) Query: 6 LPQAVQEVLAEAEKKLAHRPKLLQLFKNCFPNTLETTTKLLDDGTTFIITGDIPASWLRD 65 L + V+++ + K+ + KL +LF NCF NT++TT ++ +G F+ITGDIPA WLRD Sbjct: 8 LKEIVRKIGKDLSAKIEDK-KLQELFYNCFINTMDTTVEV-SEGDAFVITGDIPAMWLRD 65 Query: 66 SVEQVIHYVPLAKNDPDLQRIIGGLIKRHIQYIHIDPYANAFNESANDWHWNTTDVTEMS 125 S QV HY+P K P+L+ I GLI R ++ I IDPYANAFN+ N W+ D+T+ S Sbjct: 66 STSQVEHYLPFVKEYPELKAIFTGLINRQVKCIFIDPYANAFNKEPNGQKWDN-DITKDS 124 Query: 126 PWVWERKFEIDSLCFVVRLAYTYWKETGVTDFFNAEFKSALRTIIDLFRREQRHFEQSPY 185 PWVWERK+EIDSLC+ VRL + YWKE+G FFN + K A IIDL+R EQ H E+S Y Sbjct: 125 PWVWERKYEIDSLCYPVRLIHKYWKESGDETFFNDDIKKAFNMIIDLWRVEQYHREKSDY 184 Query: 186 RFTRNNGIPEDSLRNKGLGMPVNYTGMIWSGFRSSDDACDFHYNIPGNMFAVVALRQMQE 245 F R N D+L ++GLG PV YTGM WSGFR SDDAC++ Y IP NMFAVVALR + E Sbjct: 185 SFKRLNCSVTDTLSHEGLGTPVTYTGMTWSGFRPSDDACEYGYLIPANMFAVVALRYISE 244 Query: 246 FAEWVFRDMDLLAELKELEFEVDYGIKLYGIYRHPEFGPIYAYETDGFGNYCLMDDAGTP 305 AE V++D +L + L E+D I+ +G FG +YAYETDG GNY MDDA P Sbjct: 245 IAEKVYKDEELKEKADSLREEIDNAIEKHGKVYKEGFGEVYAYETDGMGNYNFMDDANVP 304 Query: 306 GLISIPYLGYTTADDLIYQNTRRFALSKENPFYYEGTAAKGIGSPHTPKDYIWHMALSMQ 365 L+SIPYL Y +D +YQNTR+F LSK N F++EG AAKGIGSPHTP YIWH+ALSMQ Sbjct: 305 SLLSIPYLEYKGIEDEVYQNTRKFILSKNNRFFFEGKAAKGIGSPHTPDQYIWHIALSMQ 364 Query: 366 GITAQSXXXXXXXXXXXXNTDADTGFMHEGFHADDPSVFTRSWFAWSNSLFSQLVYRMM 424 G+T + TDA TG+MHEGFH DDP+ FTR WFAWSNSLFS +Y + Sbjct: 365 GLTTNNQEEIDQLIKLLKETDAGTGYMHEGFHVDDPAKFTRDWFAWSNSLFSHFIYEKV 423 >B1V0S3.1 B1V0S3_CLOPE Putative uncharacterized protein Length = 427 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/419 (54%), Positives = 285/419 (68%), Gaps = 3/419 (0%) Query: 6 LPQAVQEVLAEAEKKLAHRPKLLQLFKNCFPNTLETTTKLLDDGTTFIITGDIPASWLRD 65 L + V+++ + K+ + KL +LF NCF NT++TT ++ +G F+ITGDIPA WLRD Sbjct: 8 LKEIVRKIGKDLSAKIEDK-KLQELFYNCFINTMDTTVEV-SEGDAFVITGDIPAMWLRD 65 Query: 66 SVEQVIHYVPLAKNDPDLQRIIGGLIKRHIQYIHIDPYANAFNESANDWHWNTTDVTEMS 125 S QV HY+P K P+L+ I GLI R ++ I IDPYANAFN+ N W+ D+T+ S Sbjct: 66 STSQVEHYLPFVKEYPELKAIFTGLINRQVKCIFIDPYANAFNKEPNGQKWDN-DITKDS 124 Query: 126 PWVWERKFEIDSLCFVVRLAYTYWKETGVTDFFNAEFKSALRTIIDLFRREQRHFEQSPY 185 PWVWERK+EIDSLC+ VRL + YWKE+G FFN + K A IIDL+R EQ H E+S Y Sbjct: 125 PWVWERKYEIDSLCYPVRLIHKYWKESGDETFFNDDIKKAFNMIIDLWRVEQYHREKSDY 184 Query: 186 RFTRNNGIPEDSLRNKGLGMPVNYTGMIWSGFRSSDDACDFHYNIPGNMFAVVALRQMQE 245 F R N D+L ++GLG PV YTGM WSGFR SDDAC++ Y IP NMFAVVALR + E Sbjct: 185 SFQRLNCSVTDTLSHEGLGTPVTYTGMTWSGFRPSDDACEYGYLIPANMFAVVALRYISE 244 Query: 246 FAEWVFRDMDLLAELKELEFEVDYGIKLYGIYRHPEFGPIYAYETDGFGNYCLMDDAGTP 305 AE V++D +L + L E+D I+ +G FG +YAYETDG GNY MDDA P Sbjct: 245 IAEKVYKDEELKEKADSLREEIDNAIEKHGKVYKEGFGEVYAYETDGMGNYNFMDDANVP 304 Query: 306 GLISIPYLGYTTADDLIYQNTRRFALSKENPFYYEGTAAKGIGSPHTPKDYIWHMALSMQ 365 L+SIPYL Y +D +YQNTR+F LSK N F++EG AAKGIGSPHTP YIWH+ALSMQ Sbjct: 305 SLLSIPYLEYKGIEDEVYQNTRKFILSKNNRFFFEGKAAKGIGSPHTPDQYIWHIALSMQ 364 Query: 366 GITAQSXXXXXXXXXXXXNTDADTGFMHEGFHADDPSVFTRSWFAWSNSLFSQLVYRMM 424 G+T + TDA TG+MHEGFH DDP+ FTR WFAWSNSLFS +Y + Sbjct: 365 GLTTNNQEEIDQLIKLLKETDAGTGYMHEGFHVDDPAKFTRDWFAWSNSLFSHFIYEKV 423 >B3KGE9.1 B3KGE9_9BACI Putative uncharacterized protein Length = 264 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/261 (84%), Positives = 232/261 (88%) Query: 169 IIDLFRREQRHFEQSPYRFTRNNGIPEDSLRNKGLGMPVNYTGMIWSGFRSSDDACDFHY 228 II+LF+ EQ HFE+SPYRFTR+NGIP DSLRN GLGMPVNYTGMIWSGFRSSDDACDFHY Sbjct: 4 IIELFKTEQHHFEKSPYRFTRDNGIPTDSLRNNGLGMPVNYTGMIWSGFRSSDDACDFHY 63 Query: 229 NIPGNMFAVVALRQMQEFAEWVFRDMDLLAELKELEFEVDYGIKLYGIYRHPEFGPIYAY 288 NIPGNMFAVVALRQMQEFAEWVFRDM LL ELK LE +VD+GI+LYGIYRHPEFGPIYAY Sbjct: 64 NIPGNMFAVVALRQMQEFAEWVFRDMKLLDELKRLEADVDHGIQLYGIYRHPEFGPIYAY 123 Query: 289 ETDGFGNYCLMDDAGTPGLISIPYLGYTTADDLIYQNTRRFALSKENPFYYEGTAAKGIG 348 ETDG+GNYCLMDDAGTPGL+SIPYLGY +ADD IYQNTRRFALSKENPFYYEGT AKGIG Sbjct: 124 ETDGYGNYCLMDDAGTPGLMSIPYLGYCSADDPIYQNTRRFALSKENPFYYEGTVAKGIG 183 Query: 349 SPHTPKDYIWHMALSMQGITAQSXXXXXXXXXXXXNTDADTGFMHEGFHADDPSVFTRSW 408 SPHTP DYIWHMALSMQGITAQ+ TDADTGFMHEGFHADDP VFTRSW Sbjct: 184 SPHTPPDYIWHMALSMQGITAQTAEEKLEMIALLEATDADTGFMHEGFHADDPKVFTRSW 243 Query: 409 FAWSNSLFSQLVYRMMKDGQL 429 FAWSNSLFSQLVY+ MK G L Sbjct: 244 FAWSNSLFSQLVYQAMKAGIL 264 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,740,574,369 Number of extensions: 119270969 Number of successful extensions: 224393 Number of sequences better than 1.0e-05: 244 Number of HSP's gapped: 223604 Number of HSP's successfully gapped: 249 Length of query: 429 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 290 Effective length of database: 1,751,175,118 Effective search space: 507840784220 Effective search space used: 507840784220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)