BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0027.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65L77.1 Q65L77_BACLD YngB 170 6e-41 Q70JY5.1 Q70JY5_BACAM YngB protein 163 5e-39 A7Z5B8.1 A7Z5B8_BACA2 YngB 163 7e-39 O31822.1 O31822_BACSU Putative UTP-sugar-phosphate uridylyltrans... 161 2e-38 C0KTY7.1 C0KTY7_BACME UDP-glucose pyrophosphorylase (Fragment) 158 2e-37 >Q65L77.1 Q65L77_BACLD YngB Length = 296 Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 79/153 (51%), Positives = 111/153 (72%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVSE PAL Q++++YE+ + ++GVQPV A+VSKYGII + V+ + LVEKP+ Sbjct: 134 MVSETPALRQLLEVYEEYQTEVIGVQPVDPADVSKYGIIQTSAQKNKVYQIDDLVEKPTV 193 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRY+L+PSIF VL + +RGAG E QLTDAL E+CR + + A L+G R+D Sbjct: 194 KDAPSNIAVMGRYVLRPSIFPVLEQTKRGAGNEIQLTDALREICREQSMYARKLKGSRFD 253 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDK G +A+ E+ L R+E+RP+L+ YL +L Sbjct: 254 IGDKLGSFKASTEIALMRDEMRPKLLAYLESVL 286 >Q70JY5.1 Q70JY5_BACAM YngB protein Length = 181 Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 83/153 (54%), Positives = 106/153 (69%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVS+ PAL Q++ +Y Q VGVQPV A+VSKYGII +G V+ V L+EKP+ Sbjct: 20 MVSDTPALSQLIDVYNQHATETVGVQPVDPADVSKYGIIQTGRQGGHVYQVEDLIEKPAV 79 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRYIL P+IF L + RGAG E QLTDAL EVCR + A +L+G R+D Sbjct: 80 EKAPSHIAVMGRYILTPAIFKTLKTIGRGAGNEIQLTDALREVCRTRSIYARELEGSRFD 139 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDKFG +A E+GL REE+RP+L+ YL +L Sbjct: 140 IGDKFGCFKAGTEIGLLREEMRPKLLAYLEEVL 172 >A7Z5B8.1 A7Z5B8_BACA2 YngB Length = 297 Score = 163 bits (412), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 83/153 (54%), Positives = 106/153 (69%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVS+ PAL Q++ +Y Q VGVQPV A+VSKYGII +G V+ V L+EKP+ Sbjct: 136 MVSDTPALSQLIDVYNQHGTETVGVQPVDPADVSKYGIIQTGRQGGHVYQVEDLIEKPAV 195 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRYIL P+IF L + RGAG E QLTDAL EVCR + A +L+G R+D Sbjct: 196 EKAPSHIAVMGRYILTPAIFKTLKTIGRGAGNEIQLTDALREVCRTRSIYARELEGSRFD 255 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDKFG +A E+GL REE+RP+L+ YL +L Sbjct: 256 IGDKFGCFKAGTEIGLLREEMRPKLLAYLEEVL 288 >O31822.1 O31822_BACSU Putative UTP-sugar-phosphate uridylyltransferase EC=2.7.7.- Length = 297 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/153 (55%), Positives = 107/153 (69%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVSE PAL Q+M +Y+ +VGVQ V +VSKYGII + G+ V+ V+ LVEKPSP Sbjct: 136 MVSETPALRQLMDVYDVYGTEVVGVQSVLPEDVSKYGIINTSGSQGHVYEVNDLVEKPSP 195 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRY+L SIFSVL + RGAG E QLTDAL EVCR E + A L+G RYD Sbjct: 196 EEAPSEIAVMGRYVLNSSIFSVLKTIGRGAGNEIQLTDALREVCRKEPIHARLLEGNRYD 255 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDK G +A+ E+GL R E+R QL+ YL ++ Sbjct: 256 IGDKLGCFKASTEIGLMRPEMRSQLLAYLEDVI 288 >C0KTY7.1 C0KTY7_BACME UDP-glucose pyrophosphorylase (Fragment) Length = 267 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/153 (53%), Positives = 107/153 (69%), Gaps = 2/153 (1%) Query: 3 SEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGA--VRGVHVVSGLVEKPSP 60 SE P L Q+M +YE+ +VGVQ VPR E SKYGI+ G +G+ V LVEKP+P Sbjct: 109 SETPCLKQLMDVYEKYGCAVVGVQEVPRKETSKYGIVGPKGEPLEKGLLDVETLVEKPNP 168 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS AIMGRYIL P IF +LSK E GAGGE QLTDA+ + + +LA +GKRYD Sbjct: 169 EEAPSGYAIMGRYILTPEIFDILSKEEIGAGGEIQLTDAILRLNEFQRVLAYYFEGKRYD 228 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 +GDKFG+I+AT+++ L+RE LR +LV Y R ++ Sbjct: 229 VGDKFGFIKATIDLALQREPLREELVSYFREIV 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,052,516,844 Number of extensions: 43352507 Number of successful extensions: 88892 Number of sequences better than 1.0e-05: 1722 Number of HSP's gapped: 87982 Number of HSP's successfully gapped: 1722 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)