BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0025.p (340 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7Z3R1.1 A7Z3R1_BACA2 YkcC EC=2.-.-.- 429 e-118 A8FHU5.1 A8FHU5_BACP2 Glycosyltransferase 427 e-118 O34319.2 YKCC_BACSU Uncharacterized glycosyltransferase ykcC EC=... 426 e-117 C3J2B0.1 C3J2B0_9BACI Glycosyl transferase family 2 402 e-110 B7YC72.1 B7YC72_9BACI Glycosyl transferase family 2 402 e-110 >A7Z3R1.1 A7Z3R1_BACA2 YkcC EC=2.-.-.- Length = 323 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/323 (61%), Positives = 253/323 (78%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 MS H++YS+++P+YNEE VIQ TY+R+K+VM T E YEL+FVNDGS D +++ E++ Sbjct: 1 MSRHIQYSIVVPVYNEELVIQTTYQRLKEVMDQTKEHYELIFVNDGSKDRSIEILREHSL 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D VK+ID SRNFGHQIAITAGMDY+ G+A+ +IDADLQDPPELILDMI +WK GY+VV Sbjct: 61 IDPRVKIIDFSRNFGHQIAITAGMDYAEGNAIAVIDADLQDPPELILDMIEQWKEGYDVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 YA R KR GE+ FKK TAS+FYR+LR TDI IP+DTGDFRL+DRKVC+E+KRL EKN F Sbjct: 121 YAVRTKRKGETFFKKQTASMFYRLLRSVTDIDIPLDTGDFRLLDRKVCDEMKRLKEKNPF 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRGLVSWVGF+Q A+EYERDERLAGETKYPLK+M+KLS+DGIT+FS+KP Sbjct: 181 VRGLVSWVGFKQTAVEYERDERLAGETKYPLKKMLKLSMDGITTFSHKPLKAASYAGMIM 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 VLY+ LFT++ + GW+S+I I L F+G VL++LG++GEY+GRIYDE K R Sbjct: 241 SGAGFLYMFIVLYMKLFTNSTITGWSSLIVIQLLFSGIVLLMLGMIGEYIGRIYDEAKDR 300 Query: 313 PLYIVQEFYSGRKQQSAAEQRVA 335 PLYIVQ+ Y + ++ +Q ++ Sbjct: 301 PLYIVQKAYGMKNEKIYRDQHMS 323 >A8FHU5.1 A8FHU5_BACP2 Glycosyltransferase Length = 330 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/322 (62%), Positives = 252/322 (78%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 M +++YS+++P+YNEE VI E+Y+R+K VM +TGEAYELLFVNDGS D A++I+ Y Sbjct: 1 MEKNIQYSIVVPVYNEELVIHESYQRLKTVMDSTGEAYELLFVNDGSMDRTAELIKGYCQ 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D +V+LID SRNFGHQIAITAGMDY+ G+AVV+IDADLQDPPELILDMI +WK GYEVV Sbjct: 61 TDSNVRLIDFSRNFGHQIAITAGMDYAKGEAVVVIDADLQDPPELILDMIEKWKEGYEVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 YA R KR GE++FKK+TASLFYRVLR T++ IP+DTGDFRL+DRKVC E++++ EKN F Sbjct: 121 YAVRSKRKGETVFKKYTASLFYRVLRQITEVDIPIDTGDFRLMDRKVCHEMRKIREKNPF 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRGLVSWVGF+Q A+EY RDERLAGETKYPLK+M+KLS+DGITSFSYKP Sbjct: 181 VRGLVSWVGFKQVAVEYVRDERLAGETKYPLKKMLKLSMDGITSFSYKPLKLASVTGIAL 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 VLYL LFT++ + GW+S+I I L F+G +L +LG++GEY+GRIYDE K R Sbjct: 241 SAIGFISMFLVLYLKLFTNSTITGWSSLIVIQLFFSGIILFMLGMIGEYIGRIYDEAKDR 300 Query: 313 PLYIVQEFYSGRKQQSAAEQRV 334 PLYIV++ Y + + + V Sbjct: 301 PLYIVRDSYGLQAKPHPVQSPV 322 >O34319.2 YKCC_BACSU Uncharacterized glycosyltransferase ykcC EC=2.4.-.- Length = 323 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/323 (61%), Positives = 251/323 (77%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 MS H++YS+++P+YNEE VI ETY+R+K+VM T E YELLFVNDGS D +++ E++ Sbjct: 1 MSRHIQYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVNDGSKDRSIEILREHSL 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D VK+ID SRNFGHQIAITAGMDY+ G+A+V+IDADLQDPPELIL+MI +WK GYEVV Sbjct: 61 IDPRVKIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQDPPELILEMIEKWKEGYEVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 YA R KR GE+ FKK TA++FYR+L TDI IP+DTGDFRL+DRKVC+E+KRL EKN F Sbjct: 121 YAVRTKRKGETFFKKQTAAMFYRLLSGMTDIDIPIDTGDFRLMDRKVCDEMKRLKEKNPF 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRGLVSWVGF+Q A+EY RDERLAGETKYPLK+M+KLS+DGIT+FS+KP Sbjct: 181 VRGLVSWVGFKQTAVEYVRDERLAGETKYPLKKMLKLSMDGITTFSHKPLKLASYAGILM 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 VLYL LFTD+ + GW+S+I I L F+G VL+ILG++GEY+GRIYDE K R Sbjct: 241 SGTGFLYMFIVLYLKLFTDSTITGWSSLIVIQLLFSGIVLLILGVIGEYIGRIYDEAKDR 300 Query: 313 PLYIVQEFYSGRKQQSAAEQRVA 335 PLYIVQ+ Y ++ +Q ++ Sbjct: 301 PLYIVQKSYGIENKRLYRDQHMS 323 >C3J2B0.1 C3J2B0_9BACI Glycosyl transferase family 2 Length = 320 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/311 (60%), Positives = 238/311 (76%) Query: 17 VRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTYWDES 76 V YSVI+P+YNE VI+ET+RR+K VM T YELLFVNDGSTD +++E D++ Sbjct: 2 VTYSVIVPVYNEALVIRETHRRLKAVMEQTDGPYELLFVNDGSTDETLDILKELAVKDDT 61 Query: 77 VKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVVYAKR 136 VK ID SRNFGHQIAITAGMDY+ G A+++IDADLQDPPELIL+MI+ WK GYEVVYA+R Sbjct: 62 VKYIDFSRNFGHQIAITAGMDYASGQAIIVIDADLQDPPELILEMIKRWKEGYEVVYARR 121 Query: 137 IKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRFVRGL 196 +KR GE++FK+WTA +FYR+LR +T+I IPVDTGDFRLIDRKVC++L+ + E++RFVRG+ Sbjct: 122 VKRKGETVFKRWTAYVFYRLLRAATEIDIPVDTGDFRLIDRKVCDQLRYMRERSRFVRGV 181 Query: 197 VSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXXXXXX 256 VSWVGFRQ A+EYER+ R AGETKYPLK MI+ SLDGITSFSYKP Sbjct: 182 VSWVGFRQTAVEYEREPRFAGETKYPLKNMIRFSLDGITSFSYKPLKLASLLGFLLSAAS 241 Query: 257 XXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGRPLYI 316 ++VLYL FT + V GWAS++ L NG L++LG++GEY+GRI+DE K RPLY+ Sbjct: 242 AIGIIFVLYLKWFTHSTVTGWASLLIAMLLCNGVTLLMLGVIGEYIGRIFDEVKERPLYV 301 Query: 317 VQEFYSGRKQQ 327 + E + R + Sbjct: 302 INETWGVRTKH 312 >B7YC72.1 B7YC72_9BACI Glycosyl transferase family 2 Length = 320 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/311 (60%), Positives = 238/311 (76%) Query: 17 VRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTYWDES 76 V YSVI+P+YNE VI+ET+RR+K VM T YELLFVNDGSTD +++E D++ Sbjct: 2 VTYSVIVPVYNEALVIRETHRRLKAVMEQTDGPYELLFVNDGSTDETLDILKELAVKDDT 61 Query: 77 VKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVVYAKR 136 VK ID SRNFGHQIAITAGMDY+ G A+++IDADLQDPPELIL+MI+ WK GYEVVYA+R Sbjct: 62 VKYIDFSRNFGHQIAITAGMDYASGQAIIVIDADLQDPPELILEMIKRWKEGYEVVYARR 121 Query: 137 IKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRFVRGL 196 +KR GE++FK+WTA +FYR+LR +T+I IPVDTGDFRLIDRKVC++L+ + E++RFVRG+ Sbjct: 122 VKRKGETVFKRWTAYVFYRLLRAATEIDIPVDTGDFRLIDRKVCDQLRYMRERSRFVRGV 181 Query: 197 VSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXXXXXX 256 VSWVGFRQ A+EYER+ R AGETKYPLK MI+ SLDGITSFSYKP Sbjct: 182 VSWVGFRQTAVEYEREPRFAGETKYPLKNMIRFSLDGITSFSYKPLKLASLLGFLLSAAS 241 Query: 257 XXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGRPLYI 316 ++VLYL FT + V GWAS++ L NG L++LG++GEY+GRI+DE K RPLY+ Sbjct: 242 AIGIIFVLYLKWFTHSTVTGWASLLIAMLLCNGVTLLMLGVIGEYIGRIFDEVKERPLYV 301 Query: 317 VQEFYSGRKQQ 327 + E + R + Sbjct: 302 INETWGVRTKH 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,893,919,623 Number of extensions: 77855449 Number of successful extensions: 194296 Number of sequences better than 1.0e-05: 2244 Number of HSP's gapped: 193204 Number of HSP's successfully gapped: 2245 Length of query: 340 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 204 Effective length of database: 1,779,438,163 Effective search space: 363005385252 Effective search space used: 363005385252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)