BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0024.p (702 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1TC85.1 C1TC85_9FIRM PMT family glycosyltransferase, 4-amino-4-... 279 6e-73 Q2RFZ8.1 Q2RFZ8_MOOTA Glycosyl transferase, family 39 279 8e-73 A7Z3R0.1 A7Z3R0_BACA2 YkcB 268 2e-69 B8DEK2.1 B8DEK2_LISMH Putative uncharacterized protein 260 3e-67 A5D6A1.1 A5D6A1_PELTS Hypothetical membrane protein 260 3e-67 >C1TC85.1 C1TC85_9FIRM PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase Length = 687 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 138/233 (59%), Positives = 161/233 (69%) Query: 29 WNDQYANTYYTTAVGSMLQSFHNFFFASLDSAGSVTVDKPPVTFWIQTLSALIFGLHGWS 88 W DQYAN+YYT AV SMLQ+FHNFF+AS D G VTVDKPPV FWIQTL A IFG+HGWS Sbjct: 29 WTDQYANSYYTAAVTSMLQNFHNFFYASFDPGGYVTVDKPPVVFWIQTLFAYIFGVHGWS 88 Query: 89 VILPQVIGGMGSVLLVYLLVKPTFGXXXXXXXXXXXXTTPVAGAVSRTNNIDAMLVFTLL 148 VILPQ + G+GSVLL+Y +VKPTFG TP+A AVSRTNNID+MLVFTLL Sbjct: 89 VILPQALAGVGSVLLIYYIVKPTFGKAAARLASLVMACTPIAVAVSRTNNIDSMLVFTLL 148 Query: 149 LAAWFLFKGTKRNTTGSLLAAFALIGVGFNEKMLQAYMVLPXXXXXXXXXXKVNWKKKTG 208 LA W LF+G + + +L AFA+IGVGFN KMLQAYMV+P K WKKK Sbjct: 149 LAVWLLFRGIRYDKPVCILGAFAMIGVGFNMKMLQAYMVVPAFYLFYLLAFKSTWKKKLA 208 Query: 209 XXXXXXXXXXXXXXXWAVIVDSIPASKRPYMGSSGTNSVLNLAFGYNGVARLT 261 WA++VD++ RPY+GSS TNSVL LAFGYNG++RLT Sbjct: 209 VLSAATVILTGVSLSWALVVDNVAQDSRPYIGSSKTNSVLELAFGYNGMSRLT 261 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 137/290 (47%), Positives = 172/290 (59%), Gaps = 12/290 (4%) Query: 394 PLRLFQSALSGQASWLLPFLLFGCIGIFASLR-RRNFTQEHKEAIFWLAWLVPVMGFFSI 452 PLRLFQS LS Q SWLLPF+ F +G+ A LR R+ + KE +FWLAWL+P M FFSI Sbjct: 345 PLRLFQSELSAQISWLLPFVAFAAVGLLAGLRFRKQMEDKQKETLFWLAWLLPAMAFFSI 404 Query: 453 AGFFHQYYLIMMAPPIAALAGSGWLRLWTYYKERAVWLSWLLPVATLATAVFQWYIIHPY 512 AGFFHQYYLIM+APPIAALAG+GW LW Y++RA W WLLP LA FQ YI++PY Sbjct: 405 AGFFHQYYLIMLAPPIAALAGAGWAELWQLYRDRAGWKMWLLPSGLLAATAFQLYILYPY 464 Query: 513 DSTVGSGWSIGVLAGGIAVTVLLLALRIFKGQRQRFVHASAXXXXXXXXXXXXYWALTPI 572 +G WSIG+ A G ++++LL +++ +A YWA TP+ Sbjct: 465 QKQIGIYWSIGIGAAGAVLSLILL----LAAGKEKLSGITAIAGLLVLLAAPLYWATTPL 520 Query: 573 TYGSNSMTPAAGPDS-------RSXXXXXXXXXXXXXXXVNEKLLAYLKEHNTGEKYLFA 625 YG N + P AGP R VNEKLL Y+ +HNTGE YLFA Sbjct: 521 LYGVNDVMPQAGPSRQAGAGGPRQIGGAPGQMGGDFGSGVNEKLLEYVTKHNTGETYLFA 580 Query: 626 AMDYGTAGPYIIDNNEPVVILNGFNNSDVPYTTETLKALVASGKVKYFLV 675 D +A PYII+ + V+ + GF+ D T E LK +VA KVKYFL+ Sbjct: 581 VTDSHSAAPYIIETGKAVMAMGGFSGGDSILTVEKLKKMVADKKVKYFLI 630 >Q2RFZ8.1 Q2RFZ8_MOOTA Glycosyl transferase, family 39 Length = 669 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 147/310 (47%), Positives = 186/310 (60%), Gaps = 8/310 (2%) Query: 394 PLRLFQSALSGQASWLLPFLLFGCIGIFASLRR-RNFTQEHKEAIFWLAWLVPVMGFFSI 452 PLRLFQS LSGQ SWLLPF+ F CIG+ A LR + + KEA+FWLAWL+P M FFS+ Sbjct: 347 PLRLFQSELSGQISWLLPFVAFACIGLLAGLRPGKPLPDKQKEALFWLAWLLPAMAFFSV 406 Query: 453 AGFFHQYYLIMMAPPIAALAGSGWLRLWTYYKERAVWLSWLLPVATLATAVFQWYIIHPY 512 AGFFH YYLIM+APPIAAL G+GW+ LW Y+++ W WLLP LAT VF+ YI+ PY Sbjct: 407 AGFFHHYYLIMLAPPIAALTGAGWVELWNQYRDKESWKRWLLPAGLLATTVFELYILKPY 466 Query: 513 DSTVGSGWSIGVLAGGIAVT-VLLLALRIFKGQRQRFVHASAXXXXXXXXXXXXYWALTP 571 + +G GWSIG+ A GI + VL LA+ +Q+ A YWA TP Sbjct: 467 RNQIGMGWSIGIGAAGIGLALVLFLAV-----NKQKLASKVAMAGMLVLLVAPLYWAATP 521 Query: 572 ITYGSNSMTPAAGPDSRSXXXXXXXXXXXXXXXVNEKLLAYLKEHNTGEKYLFAAMDYGT 631 I YG NSM P AGP+ R +N KLL YL +NTGEKYLFA D T Sbjct: 522 ILYGENSMLPQAGPN-RQGFGPGRITRGGMNSGINTKLLEYLTLNNTGEKYLFATTDANT 580 Query: 632 AGPYIIDNNEPVVILNGFNNSDVPYTTETLKALVASGKVKYFLVTTXXXXXXXXXXXNYQ 691 A PYII+ + V+ + GF+ SD T E LK +VA+ +VK+FL+ + N Sbjct: 581 AAPYIIETGKAVMAMGGFSGSDPILTVEKLKQMVANKEVKFFLIPSRSGFGGGPGGNNEV 640 Query: 692 LDYREWDSSS 701 LD+ +S+ Sbjct: 641 LDWIRANSTE 650 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/234 (55%), Positives = 152/234 (64%) Query: 29 WNDQYANTYYTTAVGSMLQSFHNFFFASLDSAGSVTVDKPPVTFWIQTLSALIFGLHGWS 88 W D+YAN YYT AV SMLQSFHNFF+AS D AG VTVDKPP+ WIQT+ A FG+HGWS Sbjct: 31 WEDRYANAYYTAAVTSMLQSFHNFFYASFDPAGYVTVDKPPLALWIQTIFAYFFGVHGWS 90 Query: 89 VILPQVIGGMGSVLLVYLLVKPTFGXXXXXXXXXXXXTTPVAGAVSRTNNIDAMLVFTLL 148 V+LPQ + G+GSVLL+Y LVKPTFG TP+A AVSRTNNID++LVF LL Sbjct: 91 VVLPQALAGVGSVLLIYHLVKPTFGKTAARIASLVMACTPIAVAVSRTNNIDSLLVFALL 150 Query: 149 LAAWFLFKGTKRNTTGSLLAAFALIGVGFNEKMLQAYMVLPXXXXXXXXXXKVNWKKKTG 208 +A W LF+ + +L AFA+IGVGFN KMLQAYMV+P K WKKK Sbjct: 151 IATWMLFRAVRDQKPVWVLGAFAMIGVGFNIKMLQAYMVVPAFYVFYLLAFKNEWKKKLA 210 Query: 209 XXXXXXXXXXXXXXXWAVIVDSIPASKRPYMGSSGTNSVLNLAFGYNGVARLTG 262 WA +VD P RPY+G S TNSVL LA YNG++RLTG Sbjct: 211 LLTAATVIMVGVSISWAAVVDMTPQENRPYIGGSKTNSVLELALSYNGISRLTG 264 >A7Z3R0.1 A7Z3R0_BACA2 YkcB Length = 713 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/233 (57%), Positives = 158/233 (67%) Query: 29 WNDQYANTYYTTAVGSMLQSFHNFFFASLDSAGSVTVDKPPVTFWIQTLSALIFGLHGWS 88 WND N YYT AV SMLQSFHNFF+AS D+AG +TVDKPPVT+ +QT+SALIFG+HGWS Sbjct: 28 WNDDTVNPYYTAAVTSMLQSFHNFFYASFDAAGFITVDKPPVTYQVQTISALIFGMHGWS 87 Query: 89 VILPQVIGGMGSVLLVYLLVKPTFGXXXXXXXXXXXXTTPVAGAVSRTNNIDAMLVFTLL 148 VILPQ + G+GSVL +YLL+KPTFG TP+A AV+RTNN+DA+LVF LL Sbjct: 88 VILPQALAGVGSVLFMYLLIKPTFGKTAARIASFVMACTPIAVAVARTNNVDALLVFFLL 147 Query: 149 LAAWFLFKGTKRNTTGSLLAAFALIGVGFNEKMLQAYMVLPXXXXXXXXXXKVNWKKKTG 208 A W LFK ++ LLAAF ++G GFN KMLQAYM+LP KKK Sbjct: 148 FATWLLFKAIRKGRLIWLLAAFFVVGAGFNTKMLQAYMILPAFLLFYMIAANTTIKKKII 207 Query: 209 XXXXXXXXXXXXXXXWAVIVDSIPASKRPYMGSSGTNSVLNLAFGYNGVARLT 261 W +IVD+IPASKRPY+GSS TNSVL LAFGYNG+ RLT Sbjct: 208 SLVSALAVLAAVSLSWPLIVDNIPASKRPYVGSSQTNSVLELAFGYNGIQRLT 260 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/285 (45%), Positives = 166/285 (58%), Gaps = 8/285 (2%) Query: 394 PLRLFQSALSGQASWLLPFLLFGCIG--IFASLRRRNFTQEHKEAIFWLAWLVPVMGFFS 451 PLRLFQ+ LS Q SWLLPF +FG G I + RR + E KE IFW AWLVP+ GFFS Sbjct: 361 PLRLFQTELSDQISWLLPFAIFGMAGLLIAGARERRRLSAEQKETIFWAAWLVPIAGFFS 420 Query: 452 IAGFFHQYYLIMMAPPIAALAGSGWLRLWTYYKERAVWLSWLLPVATLATAVFQWYIIHP 511 +A FFH YYLIM+APPIAAL G+GW+ L Y+++A W +WLLP A L T F+ +I+ Sbjct: 421 VAEFFHHYYLIMLAPPIAALVGAGWVALVHLYRKQAGWKTWLLPAAILVTTGFELFILRN 480 Query: 512 YDSTVGSGWSIGVLAGGIAVTVLLLALRIFKGQRQRFVHASAXXXXXXXXXXXXYWALTP 571 Y+ +G+GWSIG G+ V +AL +FK +++ + + YWA TP Sbjct: 481 YNDQIGAGWSIG---AGVLGAVAAIALFVFKQRQKPLSYYVSLAALFVLMVMPIYWASTP 537 Query: 572 ITYGSNSMTPAAGPDSRSXXXXXXXXXXXXXXXVNEKLLAYLKEHNTGEKYLFAAMDYGT 631 + YG NS P GP S VN KL+ YL++HN G YLFA D T Sbjct: 538 LLYGGNSSLPETGPQLAS---TSGKGMGMDNSSVNTKLINYLEKHNDGADYLFATTDSNT 594 Query: 632 AGPYIIDNNEPVVILNGFNNSDVPYTTETLKALVASGKVKYFLVT 676 A PYII + V+ + GF+ SD T K LV GKVKYFL + Sbjct: 595 AAPYIIKTKKAVMAIGGFSGSDPAITLTQFKKLVKEGKVKYFLTS 639 >B8DEK2.1 B8DEK2_LISMH Putative uncharacterized protein Length = 701 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/237 (54%), Positives = 159/237 (67%) Query: 29 WNDQYANTYYTTAVGSMLQSFHNFFFASLDSAGSVTVDKPPVTFWIQTLSALIFGLHGWS 88 WND N YYT AV SM+Q+FHNFF+ + D AG +TVDKPPV W+Q +SALIFG+HGWS Sbjct: 44 WNDDTVNPYYTAAVTSMVQNFHNFFYGAFDPAGFITVDKPPVALWLQAISALIFGVHGWS 103 Query: 89 VILPQVIGGMGSVLLVYLLVKPTFGXXXXXXXXXXXXTTPVAGAVSRTNNIDAMLVFTLL 148 VILPQ + G+GSV+L+Y+LVKP FG TP+A AV+RTNN+DA+LVF LL Sbjct: 104 VILPQALAGVGSVILLYVLVKPIFGAWAARITALIMALTPIAVAVTRTNNMDAILVFVLL 163 Query: 149 LAAWFLFKGTKRNTTGSLLAAFALIGVGFNEKMLQAYMVLPXXXXXXXXXXKVNWKKKTG 208 LA +FLFK R G LL +FALIGVGFN KMLQA+MV+P K++W+KK Sbjct: 164 LATFFLFKAVHRAKIGWLLLSFALIGVGFNVKMLQAFMVVPAFLLFYFIATKLSWRKKLV 223 Query: 209 XXXXXXXXXXXXXXXWAVIVDSIPASKRPYMGSSGTNSVLNLAFGYNGVARLTGDRS 265 WAV+VD S+RPY+GSS TNSVL LAFGYNG+ RL G + Sbjct: 224 QLVIALVLMLGVSVSWAVVVDQTATSERPYIGSSQTNSVLELAFGYNGMERLLGQET 280 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 114/285 (40%), Positives = 154/285 (54%), Gaps = 17/285 (5%) Query: 394 PLRLFQSALSGQASWLLPFLLFGCIGIFASLRRRN-----FTQEHKEAIFWLAWLVPVMG 448 PLRLFQ+AL Q SW LP + G + IF + R N T + KE +FW AWL+PV G Sbjct: 363 PLRLFQTALGDQISWFLPLAIIGMLAIFLAYRNENKRIYQLTSKQKEMVFWAAWLIPVAG 422 Query: 449 FFSIAGFFHQYYLIMMAPPIAALAGSGWLRLWTYYKERAVWLSWLLPVATLATAVFQWYI 508 FFSIAGFFH YYLIM+APPIA L+G G + L+ Y+++ W +LLP A T Q + Sbjct: 423 FFSIAGFFHHYYLIMLAPPIAVLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFF 482 Query: 509 IHPYDSTVGSGWSIGVLAGGIAVTVLLLALRIFKGQRQRFVHASAXXXXXXXXXXXXYWA 568 + Y + + GIA + + L +F+ Q + YW+ Sbjct: 483 VAAYLPVLA-------VVIGIAALITSIILIVFRPQPSKLTAKITALALAILLIAPTYWS 535 Query: 569 LTPITYGSNSMTPAAGPDSRSXXXXXXXXXXXXXXXVNEKLLAYLKEHNTGEKYLFAAMD 628 LTPI YG NS P AGP + V+ L++YL+++NTGE YLF D Sbjct: 536 LTPILYGGNSSLPEAGPQLKQ-----SSGGGFADASVDSDLISYLQKNNTGETYLFGTTD 590 Query: 629 YGTAGPYIIDNNEPVVILNGFNNSDVPYTTETLKALVASGKVKYF 673 TAGPYII E V+ L GFN +D T + LK ++ +G++KYF Sbjct: 591 ATTAGPYIIKTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYF 635 >A5D6A1.1 A5D6A1_PELTS Hypothetical membrane protein Length = 720 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 135/285 (47%), Positives = 173/285 (60%), Gaps = 5/285 (1%) Query: 394 PLRLFQSALSGQASWLLPFLLFGCIGIFASL-RRRNFTQEHKEAIFWLAWLVPVMGFFSI 452 PLRLFQS LSGQ SWLLPF+ F C G+ A + R+R T + KE +FWLAWLVP M FFS+ Sbjct: 386 PLRLFQSELSGQTSWLLPFVGFACTGLLAGVSRKRPLTAKQKETLFWLAWLVPAMAFFSV 445 Query: 453 AGFFHQYYLIMMAPPIAALAGSGWLRLWTYYKERAVWLSWLLPVATLATAVFQWYIIHPY 512 AGFFH YYLIM+APP+AALAG+GW+ LW+ Y++R W LLP LAT F+ Y++ PY Sbjct: 446 AGFFHHYYLIMLAPPVAALAGAGWVELWSQYRDRDGWKMLLLPAGLLATTAFELYVLQPY 505 Query: 513 DSTVGSGWSIGVLAGGIAVTVLLLALRIFKGQRQRFVHASAXXXXXXXXXXXXYWALTPI 572 +G WSI + A G + ++L K Q+ A YWA TP+ Sbjct: 506 QRQIGISWSICIGAAGAGLALVLFIAATIK---QKPAFVLALAAMLVLLAAPLYWACTPL 562 Query: 573 TYGSNSMTPAAGPDSRSXXXXXXXXXXXXXXXVNEKLLAYLKEHNTGEKYLFAAMDYGTA 632 YG N P AGP + VNEKLL YL+++NTGEKYLFA D TA Sbjct: 563 LYGVNYTMPQAGPVQQG-FGQRPGIGRGPGSGVNEKLLEYLEKNNTGEKYLFATTDANTA 621 Query: 633 GPYIIDNNEPVVILNGFNNSDVPYTTETLKALVASGKVKYFLVTT 677 PYII+ + V+ + GF+ SD T E LK +VA+ +VKYFL+ + Sbjct: 622 APYIIETGKAVMAMGGFSGSDPVLTVEKLKQMVANKEVKYFLIPS 666 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/234 (54%), Positives = 150/234 (64%) Query: 29 WNDQYANTYYTTAVGSMLQSFHNFFFASLDSAGSVTVDKPPVTFWIQTLSALIFGLHGWS 88 W DQYAN YYT AV SMLQ++ NF FAS D AG +TVDKPP FW+Q A +FG+HGWS Sbjct: 52 WKDQYANAYYTAAVTSMLQNWRNFLFASFDPAGYITVDKPPAAFWVQAAFAYVFGVHGWS 111 Query: 89 VILPQVIGGMGSVLLVYLLVKPTFGXXXXXXXXXXXXTTPVAGAVSRTNNIDAMLVFTLL 148 VILPQ + G+GSVLLVY+LVKP FG +TP+A AVSRTNNID++LVFTLL Sbjct: 112 VILPQALAGVGSVLLVYVLVKPAFGKTAARLASLVMASTPIAVAVSRTNNIDSLLVFTLL 171 Query: 149 LAAWFLFKGTKRNTTGSLLAAFALIGVGFNEKMLQAYMVLPXXXXXXXXXXKVNWKKKTG 208 +A W LF+ + LL AFA+IG GFN KM QAYMV+P + WKKK Sbjct: 172 IATWMLFRAVRSQKFLWLLGAFAMIGAGFNMKMFQAYMVVPAFCLLYLIAYEGGWKKKLA 231 Query: 209 XXXXXXXXXXXXXXXWAVIVDSIPASKRPYMGSSGTNSVLNLAFGYNGVARLTG 262 WA +V+ IP RPY+G S TNSVL LA GYNG+ RLTG Sbjct: 232 VLAAATAVMVVVSGAWATVVEVIPPENRPYIGGSRTNSVLELAVGYNGIMRLTG 285 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.137 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,097,488,569 Number of extensions: 110690404 Number of successful extensions: 287418 Number of sequences better than 1.0e-05: 118 Number of HSP's gapped: 287046 Number of HSP's successfully gapped: 216 Length of query: 702 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 559 Effective length of database: 1,713,491,058 Effective search space: 957841501422 Effective search space used: 957841501422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)