BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0020.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHD9.1 B3KHD9_9BACI Putative uncharacterized protein 144 6e-33 Q0SSS5.1 Q0SSS5_CLOPS Putative uncharacterized protein 102 2e-20 Q8XK68.1 Q8XK68_CLOPE Putative uncharacterized protein CPE1535 100 7e-20 Q0TQ68.1 Q0TQ68_CLOP1 Putative uncharacterized protein 100 7e-20 B1V134.1 B1V134_CLOPE Putative uncharacterized protein 100 7e-20 >B3KHD9.1 B3KHD9_9BACI Putative uncharacterized protein Length = 204 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 120/198 (60%), Gaps = 5/198 (2%) Query: 1 MSSHWGREVRHKY--ITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGY 58 + S W E+R KY + +++ L V+FPGKNY ++ +L +A A + G D+++LEYGY Sbjct: 8 VPSFWKTEMRQKYYQLQEDNSKLVVLFPGKNYPCDKPILHFAGTSAIQSGYDLMVLEYGY 67 Query: 59 QSARTELKRDEIDIIAEECKAAISS-LPEYEQLLFISKSMGAVIAGRVAAELNLSQKTSH 117 Q+ART+L ++ + EEC ++ + +Y+Q++FISKS+G ++AG V +L + K H Sbjct: 68 QAARTDLDIHDLQKVIEECHESVQRVISKYKQVVFISKSIGTIVAGEVHEKLEIPIK--H 125 Query: 118 LYLTPVADSLPLLRQSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEVGSV 177 L+LTP+ D++ + + +G ++YG D F +HA + K V I +AN++LE Sbjct: 126 LFLTPIKDTIHYINRFKGLVVYGSKDEVFNHEHANRIKLDKATEVIEIPNANHSLETNHA 185 Query: 178 NESLAVLLVIINFYHEFF 195 ES+ +L ++ Y F Sbjct: 186 PESVEILSKLVGIYTNFL 203 >Q0SSS5.1 Q0SSS5_CLOPS Putative uncharacterized protein Length = 208 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 107/190 (56%), Gaps = 6/190 (3%) Query: 1 MSSHWGREVRHKYITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQS 60 + S+WG E+ ++I SK L ++ PG Y +RS LDY+ +LA+E G D+L +EYGYQ Sbjct: 6 IKSYWGVELSPRFIDARSKKLCIILPGIGYCLDRSYLDYSKQLAKEIGYDVLEIEYGYQI 65 Query: 61 ARTELK-RDEIDIIAEECKAAISSL--PEYEQLLFISKSMGAVIAGRVAAELNLSQKT-S 116 R+E E I+ E I + EYE++L I KS+G + + +L+ K+ Sbjct: 66 NRSEFNIEKEFSIMVSESLEVIDNAIEKEYEEILIIGKSIGTSVQSFLNKDLSGRFKSIR 125 Query: 117 HLYLTPVADSLPLLR-QSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEV- 174 ++Y++P+ +L +S +I G DP + H + ++++ + I+ AN+AL++ Sbjct: 126 NIYISPINKTLDEFNIESNSLVITGDKDPLLSIAHRVEIEKREDIESFIIEGANHALDIE 185 Query: 175 GSVNESLAVL 184 G+V +++ L Sbjct: 186 GNVMKTVDAL 195 >Q8XK68.1 Q8XK68_CLOPE Putative uncharacterized protein CPE1535 Length = 208 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%) Query: 1 MSSHWGREVRHKYITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQS 60 + S+WG E+ ++I SK L ++ PG Y +RS LDY+ +LA+E G D+L +EYGYQ Sbjct: 6 IKSYWGVELSPRFIDAGSKKLCIILPGIGYCLDRSYLDYSKQLAKEIGYDVLEIEYGYQI 65 Query: 61 ARTELK-RDEIDIIAEECKAAISSL--PEYEQLLFISKSMGAVIAGRVAAELNLSQKT-S 116 R+E E I+ E I + EYE++L I KS+G + + +L+ K Sbjct: 66 NRSEFNIEKEFSIMVSESLEVIDNAIEKEYEEILIIGKSIGTSVQSFLNKDLSGRFKNIR 125 Query: 117 HLYLTPVADSLPLLR-QSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEV- 174 ++Y++P+ +L +S +I G DP + H + ++++ + I+ AN+AL++ Sbjct: 126 NIYISPINKTLDEFNIESNSLVITGDKDPLLSIAHRVEIEKREDIESFIIEGANHALDIE 185 Query: 175 GSVNESLAVL 184 G+V ++ L Sbjct: 186 GNVMNTVDAL 195 >Q0TQ68.1 Q0TQ68_CLOP1 Putative uncharacterized protein Length = 208 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%) Query: 1 MSSHWGREVRHKYITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQS 60 + S+WG E+ ++I SK L ++ PG Y +RS LDY+ +LA+E G D+L +EYGYQ Sbjct: 6 IKSYWGVELSPRFIDAGSKKLCIILPGIGYCLDRSYLDYSKQLAKEIGYDVLEIEYGYQI 65 Query: 61 ARTELK-RDEIDIIAEECKAAISSL--PEYEQLLFISKSMGAVIAGRVAAELNLSQKT-S 116 R+E E I+ E I + EYE++L I KS+G + + +L+ K Sbjct: 66 NRSEFNIEKEFSIMVSESLEVIDNAIEKEYEEILIIGKSIGTSVQSFLNKDLSGRFKNIR 125 Query: 117 HLYLTPVADSLPLLR-QSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEV- 174 ++Y++P+ +L +S +I G DP + H + ++++ + I+ AN+AL++ Sbjct: 126 NIYISPINKTLDEFNIESNSLVITGDKDPLLSIAHRVEIEKREDIESFIIEGANHALDIE 185 Query: 175 GSVNESLAVL 184 G+V ++ L Sbjct: 186 GNVMNTVDAL 195 >B1V134.1 B1V134_CLOPE Putative uncharacterized protein Length = 208 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%) Query: 1 MSSHWGREVRHKYITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQS 60 + S+WG E+ ++I SK L ++ PG Y +RS LDY+ +LA+E G D+L +EYGYQ Sbjct: 6 IKSYWGVELSPRFIDAGSKKLCIILPGIGYCLDRSYLDYSKQLAKEIGYDVLEIEYGYQI 65 Query: 61 ARTELK-RDEIDIIAEECKAAISSL--PEYEQLLFISKSMGAVIAGRVAAELNLSQKT-S 116 R+E E I+ E I + EYE++L I KS+G + + +L+ K Sbjct: 66 NRSEFNIEKEFSIMVSESLEVIDNAIEKEYEEILIIGKSIGTSVQSFLNKDLSGRFKNIR 125 Query: 117 HLYLTPVADSLPLLR-QSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEV- 174 ++Y++P+ +L +S +I G DP + H + ++++ + I+ AN+AL++ Sbjct: 126 NIYISPINKTLDEFNIESNSLVITGDKDPLLSIAHRVEIEKREDIESFIIEGANHALDIE 185 Query: 175 GSVNESLAVL 184 G+V ++ L Sbjct: 186 GNVMNTVDAL 195 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,107,995,396 Number of extensions: 41332645 Number of successful extensions: 123841 Number of sequences better than 1.0e-05: 38 Number of HSP's gapped: 123863 Number of HSP's successfully gapped: 38 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)