BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0015.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEB2.1 B3KEB2_9BACI Methylated-DNA-(Protein)-cysteine S-methyl...   115   1e-24
C0ZCY2.1 C0ZCY2_BREBN Putative uncharacterized protein                113   6e-24
A6CT84.1 A6CT84_9BACI Putative uncharacterized protein                105   9e-22
A8U650.1 A8U650_9LACT Putative uncharacterized protein                105   1e-21
A7Z5V8.1 A7Z5V8_BACA2 Putative uncharacterized protein                105   2e-21

>B3KEB2.1 B3KEB2_9BACI Methylated-DNA-(Protein)-cysteine S-methyltransferase
           DNA binding
          Length = 103

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 65/81 (80%)

Query: 1   MTYGGIARAAGSPRAARQVVRILHSMSRKYKLPWHRVVNVKGEIALADDESSSLQRLYLL 60
           MTYG +AR AGSPR ARQVVRILH++S  +KLPWHRV+N KGEIA+ DDES  +Q LYL 
Sbjct: 21  MTYGQVARLAGSPRGARQVVRILHTLSHIHKLPWHRVINAKGEIAIQDDESRLMQELYLQ 80

Query: 61  GEGIVFDAKGVIDLQRYQYHP 81
            EG+  + KG+IDL++Y+Y P
Sbjct: 81  DEGVAVNHKGIIDLEKYRYDP 101


>C0ZCY2.1 C0ZCY2_BREBN Putative uncharacterized protein
          Length = 128

 Score =  113 bits (282), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query: 1   MTYGGIARAAGSPRAARQVVRILHSMSRKYKLPWHRVVNVKGEIALADDESSSLQRLYLL 60
           MTYG IA  AGSPRAARQ+VRILHSMS+K++LPWHRV+N +G+I L D +S +LQ++ L 
Sbjct: 40  MTYGQIAALAGSPRAARQIVRILHSMSKKHQLPWHRVINAQGKIGLQDLDSFTLQKMALE 99

Query: 61  GEGIVFDAKGVIDLQRYQYHPE 82
            EG+V  A G I L+RYQ+HP+
Sbjct: 100 SEGVVVSAAGEIALERYQFHPQ 121


>A6CT84.1 A6CT84_9BACI Putative uncharacterized protein
          Length = 103

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 63/82 (76%)

Query: 1   MTYGGIARAAGSPRAARQVVRILHSMSRKYKLPWHRVVNVKGEIALADDESSSLQRLYLL 60
           MTYG IA  AGSPRAARQVVRILHSMS KYKLPWHRV+N KG+IAL DDE+   Q++ L 
Sbjct: 21  MTYGQIAGLAGSPRAARQVVRILHSMSGKYKLPWHRVINAKGQIALQDDEAFYEQKMNLE 80

Query: 61  GEGIVFDAKGVIDLQRYQYHPE 82
            EG+     G I+L++Y+++P 
Sbjct: 81  MEGVEVGLHGKINLEKYRWNPN 102


>A8U650.1 A8U650_9LACT Putative uncharacterized protein
          Length = 110

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 58/84 (69%)

Query: 1   MTYGGIARAAGSPRAARQVVRILHSMSRKYKLPWHRVVNVKGEIALADDESSSLQRLYLL 60
           MTYG IA  AG+PR ARQVVR LH+MS  Y LPWHRV+N KGE+A+ D E +  Q+  LL
Sbjct: 21  MTYGQIAALAGNPRGARQVVRTLHTMSGNYNLPWHRVINTKGEVAIKDAEGAFTQKDRLL 80

Query: 61  GEGIVFDAKGVIDLQRYQYHPEPD 84
            EGI+    G IDL  Y+YHP  D
Sbjct: 81  SEGIILTTSGKIDLSVYRYHPVVD 104


>A7Z5V8.1 A7Z5V8_BACA2 Putative uncharacterized protein
          Length = 102

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 60/82 (73%)

Query: 1   MTYGGIARAAGSPRAARQVVRILHSMSRKYKLPWHRVVNVKGEIALADDESSSLQRLYLL 60
           MTYG IA  AGSPR ARQVVRILHSMS+K++LPWHRV+N KGEI L D+E  S+Q+L L 
Sbjct: 20  MTYGQIADLAGSPRGARQVVRILHSMSKKHRLPWHRVINAKGEIGLRDEEMFSVQKLSLE 79

Query: 61  GEGIVFDAKGVIDLQRYQYHPE 82
            EG+   + G IDL  Y + P 
Sbjct: 80  AEGVAVTSDGRIDLNLYVHDPN 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 578,048,656
Number of extensions: 20455255
Number of successful extensions: 45236
Number of sequences better than 1.0e-05: 247
Number of HSP's gapped: 45113
Number of HSP's successfully gapped: 247
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)