BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0014.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9XIR6.1 B9XIR6_9BACT Putative uncharacterized protein 107 6e-22 C1U5Z4.1 C1U5Z4_9SPHI Predicted membrane protein, COG4330 92 4e-17 C4D5I1.1 C4D5I1_9SPHI Predicted membrane protein, COG4330 82 4e-14 B1MK02.1 B1MK02_MYCA9 Putative uncharacterized protein 80 2e-13 Q897Z3.1 Q897Z3_CLOTE Putative uncharacterized protein 77 1e-12 >B9XIR6.1 B9XIR6_9BACT Putative uncharacterized protein Length = 232 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 15/202 (7%) Query: 32 DTFYKFLIWNLFLAWLPFVFSMA-AHELDKRKIGGLLVLPLGIAWLLFFPNAPYIMTDLV 90 D Y FLIWNLFLAW+P VF++ + K + G + L WLLFFPNAPYI TDL+ Sbjct: 39 DWNYCFLIWNLFLAWMPLVFAVGVSRRYRKGERLGFAIYSLAALWLLFFPNAPYIFTDLI 98 Query: 91 HLTIRKNLYFVSGTIQNRYWYDLITLLLFTWSGWLTGFFSLYQFQSVIYRKTNLLLSWIF 150 HLT ++RYW D+ +LLF ++G+L GF SLY Q V+ + +SW+F Sbjct: 99 HLTT---------WFKHRYWTDMSLILLFAFTGFLLGFMSLYLMQRVVADRFGGTMSWLF 149 Query: 151 VLFACXXXXXXXXXXXXXXXNSWDVLTD-----RHQLYQLVVDSLNRQSVFFSLFIACVL 205 ++ NSWDV+ D R + + NR + F+ A L Sbjct: 150 IMVTAGLGGFGIYLGRVRRWNSWDVVVDPMGIVRDMAHWVTHPMANRTWIGFTALFATFL 209 Query: 206 LAIYTTMYCLLNVLGRGSRDYS 227 Y +Y L ++ R+ + Sbjct: 210 FLGYLMLYALTHLQPAQQREVT 231 >C1U5Z4.1 C1U5Z4_9SPHI Predicted membrane protein, COG4330 Length = 226 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 12/159 (7%) Query: 35 YKFLIWNLFLAWLPFVFSMAAHELDKRKIG--GLLVLPLGIAWLLFFPNAPYIMTDLVHL 92 + FL WNLFLAW+P +F E++KR+ G+L++ L + WLLFFPNAPYI+TDL HL Sbjct: 40 FVFLAWNLFLAWVPLLFIKWVWEMEKRRPAPFGILMIYLTV-WLLFFPNAPYIITDLKHL 98 Query: 93 TIRKNLYFVSGTIQNRYWYDLITLLLFTWSGWLTGFFSLYQFQSVIYRKTNLLLSWIFVL 152 G +N WYD + + F+ +G++TG +S+ +I + N L+W +L Sbjct: 99 ---------RGVPENMIWYDALMIFTFSLAGFMTGLYSIRIVHRIIAHRWNERLAWFAIL 149 Query: 153 FACXXXXXXXXXXXXXXXNSWDVLTDRHQLYQLVVDSLN 191 + NSWD++T L + + SL+ Sbjct: 150 NSMILSGFGIFLGRYGRWNSWDIITQPGALAKGIYRSLH 188 >C4D5I1.1 C4D5I1_9SPHI Predicted membrane protein, COG4330 Length = 228 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 11/182 (6%) Query: 34 FYKFLIWNLFLAWLPFVFSMAAHELDKRKIGGLLVLPLGIA-WLLFFPNAPYIMTDLVHL 92 F+ LIWNL LAW P + +L +L G+A WL F PNAPYI+TDL H+ Sbjct: 41 FFVMLIWNLILAWFPLGVVLVLRDLRTAGFRNQWLLAAGLAGWLAFLPNAPYIITDLFHI 100 Query: 93 TIRKNLYFVSGTIQNRYWYDLITLLLFTWSGWLTGFFSLYQFQSVIYRKTNLLLSWIFVL 152 +N+ Q W+D +TL +F +G LTG +S+ ++ T +L +W+F++ Sbjct: 101 ---RNVE------QPLLWFDTMTLFIFALTGLLTGLYSILIVHRMLRPLTGVLRAWVFIM 151 Query: 153 FACXXXXXXXXXXXXXXXNSWDVLTDRHQLYQLVVDSLNRQ-SVFFSLFIACVLLAIYTT 211 + NSW+VLT +L + +V + + S+ ++ VL +Y Sbjct: 152 GSQVLSGFGIYLGRVGRWNSWNVLTTPSELTRAIVHAYHDHLSIKLTIAYGFVLFIVYVA 211 Query: 212 MY 213 Y Sbjct: 212 FY 213 >B1MK02.1 B1MK02_MYCA9 Putative uncharacterized protein Length = 227 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 21/191 (10%) Query: 25 GVVSQRTDTFY--KFLIWNLFLAWLPFVFSMAAHELDKRKIGGLLVLPLGIAWLLFFPNA 82 GV FY +FLIWNLFLAWLP VF+ A ++KI ++P+G+ WL F PNA Sbjct: 24 GVTDPAAPLFYPTRFLIWNLFLAWLP-VFAALAFSAVRQKI---WLIPIGLVWLAFLPNA 79 Query: 83 PYIMTDLVHLTIRKNLYFVSGTIQNRYWYDLITLLLFTWSGWLTGFFSLYQFQSVIYRKT 142 PY++TDLVHL ++G +W ++ + W+G + G SL I R Sbjct: 80 PYLVTDLVHL--------INGI---AFWRHVLQYGVAAWTGIILGIVSLRLVHRRIQRDF 128 Query: 143 NLLLSWIFVLFACXXXXXXXXXXXXXXXNSWDVLTDRHQLYQLVVDSLNRQSVFFSLFIA 202 + WI V+ + NSWD++ H+ + +L S FS F+A Sbjct: 129 GAVTGWIVVVVSVGLCAVGVVIGRFQRWNSWDLI---HRPGAVAASTLEWVSSPFS-FVA 184 Query: 203 CVLLAIYTTMY 213 +A+ + Sbjct: 185 HTGVAVAVAAF 195 >Q897Z3.1 Q897Z3_CLOTE Putative uncharacterized protein Length = 248 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 13/175 (7%) Query: 37 FLIWNLFLAWLP----FVFSMAAHELDKRKIGGLLVLPLGIAWLLFFPNAPYIMTDLVHL 92 ++IWNL LAW+P + F + +K+K L++ L + W++ +PNAPYI+TDL HL Sbjct: 50 YMIWNLLLAWIPLEISYFFKKVSTNKNKKKYSQTLIILLSVIWIISYPNAPYIITDLAHL 109 Query: 93 TIRKNLYFVSGTIQN---------RYWYDLITLLLFTWSGWLTGFFSLYQFQSVIYRKTN 143 K ++ + W D + + W + F SLY + +I K N Sbjct: 110 NGNKYFEIINVNTEGTKFIFNNDLNVWTDFFYIFIAVWISSIISFASLYINKQIIMEKYN 169 Query: 144 LLLSWIFVLFACXXXXXXXXXXXXXXXNSWDVLTDRHQLYQLVVDSLNRQSVFFS 198 + SW+F+ SW+V+ ++ L+ ++N+ + FS Sbjct: 170 NIFSWLFLFIVSIFSGFNIYLSRFENFCSWNVIIAPYKTIVLISKNINKITFKFS 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.146 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,097,078 Number of extensions: 46487561 Number of successful extensions: 157057 Number of sequences better than 1.0e-05: 53 Number of HSP's gapped: 157031 Number of HSP's successfully gapped: 53 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 129 (54.3 bits)