BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0013.p (593 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HXY8.1 B1HXY8_LYSSC Putative sulfate transporter ychM 685 0.0 A3I8U7.1 A3I8U7_9BACI Possible sulfate transporter 679 0.0 C3FMR5.1 C3FMR5_BACTB Sulfate transporter 675 0.0 C3D4B9.1 C3D4B9_BACTU Sulfate transporter 675 0.0 C3CL93.1 C3CL93_BACTU Sulfate transporter 675 0.0 >B1HXY8.1 B1HXY8_LYSSC Putative sulfate transporter ychM Length = 592 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/569 (59%), Positives = 420/569 (73%), Gaps = 4/569 (0%) Query: 5 GRFKGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGS 64 GRF+GY++ +KDL+SGIIVG++AIPL M+FAIASGVKPEYGIYT +AGILIS+FGGS Sbjct: 19 GRFEGYSVHHAKKDLLSGIIVGIVAIPLAMSFAIASGVKPEYGIYTACIAGILISIFGGS 78 Query: 65 KFQIGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIG 124 K+QIGGPTGAF+PIL I + YGYE+LLLAG+MA IKFIPRPVTIG Sbjct: 79 KYQIGGPTGAFVPILLGIVLTYGYEDLLLAGLMAGVLLCLMGIFKLGTLIKFIPRPVTIG 138 Query: 125 FTAGIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVL 184 FTAGIAVIIFTGQIANFLGL +M RHE F+ N++EIG + T N+YSILTAVICL +++ Sbjct: 139 FTAGIAVIIFTGQIANFLGLSNMTRHEYFIANIQEIGKQIGTTNIYSILTAVICLITIIM 198 Query: 185 GIRFAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLL 244 +F PKVPGALVG++ +T++A FFSG+V TI +AYG IPNTLP+F P +T+ER++ L Sbjct: 199 TPKFFPKVPGALVGIVVSTLVATFFFSGQVATIATAYGQIPNTLPNFALPTMTFERLQQL 258 Query: 245 LRPAFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAI 304 + PAFVIAMLG IESLLSAVVADGM+ S+ SNRELIGQG+ANI P+FGGIPATGAI Sbjct: 259 IGPAFVIAMLGGIESLLSAVVADGMTNSK--HNSNRELIGQGIANIVTPMFGGIPATGAI 316 Query: 305 ARTATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEF 364 ARTATNIK+GA SP+SG+IHGV V L LLL APYAS IPLA+MAP+LMVVAWNMSERK F Sbjct: 317 ARTATNIKTGAVSPMSGIIHGVFVLLTLLLLAPYASHIPLASMAPVLMVVAWNMSERKHF 376 Query: 365 LHLLKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPS- 423 H++KLK+GDS KRM E +V+KVLPD S Sbjct: 377 SHIIKLKSGDSLVLLITFLLTVFTSLTLAVEVGLVLAVLLFAKRMSEKLVVTKVLPDHSN 436 Query: 424 -SVKVEAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPF 482 S KV+ H+V HDCPQI +Y +EGPLFFGAA RFE + G + +V++LRMGKVPF Sbjct: 437 KSEKVQPHVVHQQHDCPQISMYTIEGPLFFGAAQRFEQMIEGTLQQRPRVLILRMGKVPF 496 Query: 483 IDTTGEANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAIND 542 +D+TGEA + ++ GG ++++G+Q LQ+ GLY KIGA FY+HTGEAI+ Sbjct: 497 MDSTGEAYFSNIIDNFTAQGGNILVTGVQDDLKVALQQNGLYAKIGAHHFYQHTGEAISR 556 Query: 543 ALKAINHSKCLGCRHAAFRECTAFSGLDE 571 AL ++ ++C+GC+H AF EC S +E Sbjct: 557 ALNYLDRTQCIGCQHFAFHECKDLSKSEE 585 >A3I8U7.1 A3I8U7_9BACI Possible sulfate transporter Length = 592 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/569 (59%), Positives = 418/569 (73%), Gaps = 4/569 (0%) Query: 5 GRFKGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGS 64 GRF+GY++ +KDL+SGIIVG++AIPL M+FAIASGVKPEYGIYT +AG+LIS+FGGS Sbjct: 19 GRFEGYSVHHAKKDLLSGIIVGIVAIPLAMSFAIASGVKPEYGIYTACIAGVLISIFGGS 78 Query: 65 KFQIGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIG 124 K+QIGGPTGAF+PIL I + YGYE+LLLAG+MA IKFIPRPVTIG Sbjct: 79 KYQIGGPTGAFVPILLGIVLTYGYEDLLLAGLMAGVLLCLMGIFKLGTLIKFIPRPVTIG 138 Query: 125 FTAGIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVL 184 FTAGIAVIIFTGQIANFLGL +M RHE F+ N++EIG + T N++SILTAVIC +++ Sbjct: 139 FTAGIAVIIFTGQIANFLGLTNMTRHEYFIANIQEIGKQIGTTNIFSILTAVICFITIMM 198 Query: 185 GIRFAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLL 244 +F PKVPGALVG++ +T++A FFSG+V TI +AYG IPNTLP+F P IT ER++ L Sbjct: 199 TPKFFPKVPGALVGIIVSTLVATFFFSGQVATIATAYGQIPNTLPNFAIPTITIERLQQL 258 Query: 245 LRPAFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAI 304 + PAFVIAMLG IESLLSAVVADGM+ S+ SNRELIGQG+ANI P+FGGIPATGAI Sbjct: 259 IGPAFVIAMLGGIESLLSAVVADGMTNSK--HNSNRELIGQGIANIVTPMFGGIPATGAI 316 Query: 305 ARTATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEF 364 ARTATNIK+GA SP+SG+IHGV V + LLL APYAS IPLA+MAP+LMVVAWNMSERK F Sbjct: 317 ARTATNIKTGAVSPMSGIIHGVFVLITLLLLAPYASHIPLASMAPVLMVVAWNMSERKHF 376 Query: 365 LHLLKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPS- 423 H++KLK+GDS KRM E +V+KVLPD S Sbjct: 377 AHIIKLKSGDSLVLLITFLLTVFTSLTLAVEVGLVLAVLLFAKRMSEKLVVTKVLPDHSN 436 Query: 424 -SVKVEAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPF 482 S KV+ H+V HDCPQI +Y +EGPLFFGAA RFE T+ + +V++LRMGKVPF Sbjct: 437 KSEKVQHHVVHQQHDCPQISLYTIEGPLFFGAAQRFEQTIASTLQQQSRVLILRMGKVPF 496 Query: 483 IDTTGEANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAIND 542 +D+TGEA + ++ GG ++++G+Q LQ+ GLYDKIGA FY+HTGEAI Sbjct: 497 MDSTGEAYFSNIIDNFTAQGGNILVTGVQDDLKIALQQNGLYDKIGAHHFYQHTGEAITR 556 Query: 543 ALKAINHSKCLGCRHAAFRECTAFSGLDE 571 A ++ ++C+GC+H AF EC FS +E Sbjct: 557 AFSYLDRNRCIGCQHFAFHECKEFSKSEE 585 >C3FMR5.1 C3FMR5_BACTB Sulfate transporter Length = 587 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/583 (59%), Positives = 427/583 (73%), Gaps = 6/583 (1%) Query: 5 GRFKGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGS 64 GRF+GY++A +KDL+SG+IVGV+AIPL M+FAIASGVKPEYGIYTT +AGILISLFGGS Sbjct: 7 GRFEGYSLAHFQKDLLSGMIVGVVAIPLAMSFAIASGVKPEYGIYTTCIAGILISLFGGS 66 Query: 65 KFQIGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIG 124 K+QIGGPTGAF+PIL + + YGYENLLL+G++A IKFIPRPVTIG Sbjct: 67 KYQIGGPTGAFVPILLGVVITYGYENLLLSGLLAGIILCLMGIFKLGSLIKFIPRPVTIG 126 Query: 125 FTAGIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVL 184 FT+GIAVIIFTGQIA+FLGL +K+HE F+ N+KE+ H+ST N YS++TA+IC V+++ Sbjct: 127 FTSGIAVIIFTGQIASFLGLTGIKKHEEFLANLKELFTHISTTNFYSVITALICFFVILI 186 Query: 185 GIRFAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLL 244 + PKVPG+LVG++ +T+IA +FFSG V TIG+AYG IPNTLP F P IT ERIK L Sbjct: 187 TPKILPKVPGSLVGVVISTVIATVFFSGHVPTIGTAYGTIPNTLPQFDIPEITLERIKQL 246 Query: 245 LRPAFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAI 304 + PAFVIAMLG IESLLSAVVADGM+ S+ SN+EL+GQG+ANI PLFGGIPATGAI Sbjct: 247 IGPAFVIAMLGGIESLLSAVVADGMTNSK--HNSNKELVGQGIANIVTPLFGGIPATGAI 304 Query: 305 ARTATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEF 364 ARTATNIKSGA SP+SG+IHG V L LLL APYAS IPLA+MAPILMVVAWNMSE+K F Sbjct: 305 ARTATNIKSGAVSPMSGIIHGGFVLLTLLLLAPYASHIPLASMAPILMVVAWNMSEQKHF 364 Query: 365 LHLLKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPS- 423 H+LK+KTGDS KRM + ++SKVLPD + Sbjct: 365 YHILKMKTGDSLVLLVTFLLTVFTSLTTAVEIGLILAVILFTKRMSNMLVISKVLPDHTK 424 Query: 424 -SVKVEAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPF 482 + K+ +H+V +HDCPQI IY +EGPLFFGAA FE + K KV++LRMGKVPF Sbjct: 425 KNEKLLSHVVNKAHDCPQISIYTIEGPLFFGAAQTFEQNILATIHYKPKVLILRMGKVPF 484 Query: 483 IDTTGEANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAIND 542 IDTTGE+ +V+ ++ GG L+ISGIQS+ L K GLY +IG F++HTGEAIN Sbjct: 485 IDTTGESYFRNIVQHFKKQGGVLLISGIQSELKANLDKNGLYAEIGKENFFDHTGEAINC 544 Query: 543 ALKAINHSKCLGCRHAAFRECTAFSGLDEASGRSTFKGRVPAV 585 AL +N KC+GC+H AF ECT S ++ +T K +V A+ Sbjct: 545 ALGHLNTKKCIGCKHFAFHECTGLS--QQSQEINTIKNKVNAL 585 >C3D4B9.1 C3D4B9_BACTU Sulfate transporter Length = 587 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/583 (59%), Positives = 427/583 (73%), Gaps = 6/583 (1%) Query: 5 GRFKGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGS 64 GRF+GY++A +KDL+SG+IVGV+AIPL M+FAIASGVKPEYGIYTT +AGILISLFGGS Sbjct: 7 GRFEGYSLAHFQKDLLSGMIVGVVAIPLAMSFAIASGVKPEYGIYTTCIAGILISLFGGS 66 Query: 65 KFQIGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIG 124 K+QIGGPTGAF+PIL + + YGYENLLL+G++A IKFIPRPVTIG Sbjct: 67 KYQIGGPTGAFVPILLGVVITYGYENLLLSGLLAGIILCLMGIFKLGSLIKFIPRPVTIG 126 Query: 125 FTAGIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVL 184 FT+GIAVIIFTGQIA+FLGL +K+HE F+ N+KE+ H+ST N YS++TA+IC V+++ Sbjct: 127 FTSGIAVIIFTGQIASFLGLTGIKKHEEFLANLKELFTHISTTNFYSVITALICFFVILI 186 Query: 185 GIRFAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLL 244 + PKVPG+LVG++ +T+IA +FFSG V TIG+AYG IPNTLP F P IT ERIK L Sbjct: 187 TPKILPKVPGSLVGVVISTVIATVFFSGHVPTIGTAYGTIPNTLPQFDIPEITLERIKQL 246 Query: 245 LRPAFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAI 304 + PAFVIAMLG IESLLSAVVADGM+ S+ SN+EL+GQG+ANI PLFGGIPATGAI Sbjct: 247 IGPAFVIAMLGGIESLLSAVVADGMTNSK--HNSNKELVGQGIANIVTPLFGGIPATGAI 304 Query: 305 ARTATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEF 364 ARTATNIKSGA SP+SG+IHG V L LLL APYAS IPLA+MAPILMVVAWNMSE+K F Sbjct: 305 ARTATNIKSGAVSPMSGIIHGGFVLLTLLLLAPYASHIPLASMAPILMVVAWNMSEQKHF 364 Query: 365 LHLLKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPS- 423 H+LK+KTGDS KRM + ++SKVLPD + Sbjct: 365 YHILKMKTGDSLVLLVTFLLTVFTSLTTAVEIGLILAVILFTKRMSNMLVISKVLPDHTK 424 Query: 424 -SVKVEAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPF 482 + K+ +H+V +HDCPQI IY +EGPLFFGAA FE + K KV++LRMGKVPF Sbjct: 425 KNEKLLSHVVNKAHDCPQISIYTIEGPLFFGAAQTFEQNILATIHYKPKVLILRMGKVPF 484 Query: 483 IDTTGEANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAIND 542 IDTTGE+ +V+ ++ GG L+ISGIQS+ L K GLY +IG F++HTGEAIN Sbjct: 485 IDTTGESYFRNIVQHFKKQGGVLLISGIQSELKANLDKNGLYAEIGKENFFDHTGEAINC 544 Query: 543 ALKAINHSKCLGCRHAAFRECTAFSGLDEASGRSTFKGRVPAV 585 AL +N KC+GC+H AF ECT S ++ +T K +V A+ Sbjct: 545 ALGHLNTKKCIGCKHFAFHECTGLS--QQSQEINTIKNKVNAL 585 >C3CL93.1 C3CL93_BACTU Sulfate transporter Length = 587 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/583 (59%), Positives = 427/583 (73%), Gaps = 6/583 (1%) Query: 5 GRFKGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGS 64 GRF+GY++A +KDL+SG+IVGV+AIPL M+FAIASGVKPEYGIYTT +AGILISLFGGS Sbjct: 7 GRFEGYSLAHFQKDLLSGMIVGVVAIPLAMSFAIASGVKPEYGIYTTCIAGILISLFGGS 66 Query: 65 KFQIGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIG 124 K+QIGGPTGAF+PIL + + YGYENLLL+G++A IKFIPRPVTIG Sbjct: 67 KYQIGGPTGAFVPILLGVVITYGYENLLLSGLLAGIILCLMGIFKLGSLIKFIPRPVTIG 126 Query: 125 FTAGIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVL 184 FT+GIAVIIFTGQIA+FLGL +K+HE F+ N+KE+ H+ST N YS++TA+IC V+++ Sbjct: 127 FTSGIAVIIFTGQIASFLGLTGIKKHEEFLANLKELFTHISTTNFYSVITALICFFVILI 186 Query: 185 GIRFAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLL 244 + PKVPG+LVG++ +T+IA +FFSG V TIG+AYG IPNTLP F P IT ERIK L Sbjct: 187 TPKILPKVPGSLVGVVISTVIATVFFSGHVPTIGTAYGTIPNTLPQFDIPEITLERIKQL 246 Query: 245 LRPAFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAI 304 + PAFVIAMLG IESLLSAVVADGM+ S+ SN+EL+GQG+ANI PLFGGIPATGAI Sbjct: 247 IGPAFVIAMLGGIESLLSAVVADGMTNSK--HNSNKELVGQGIANIVTPLFGGIPATGAI 304 Query: 305 ARTATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEF 364 ARTATNIKSGA SP+SG+IHG V L LLL APYAS IPLA+MAPILMVVAWNMSE+K F Sbjct: 305 ARTATNIKSGAVSPMSGIIHGGFVLLTLLLLAPYASHIPLASMAPILMVVAWNMSEQKHF 364 Query: 365 LHLLKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPS- 423 H+LK+KTGDS KRM + ++SKVLPD + Sbjct: 365 YHILKMKTGDSLVLLVTFLLTVFTSLTTAVEIGLILAVILFTKRMSNMLVISKVLPDHTK 424 Query: 424 -SVKVEAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPF 482 + K+ +H+V +HDCPQI IY +EGPLFFGAA FE + K KV++LRMGKVPF Sbjct: 425 KNEKLLSHVVNKAHDCPQISIYTIEGPLFFGAAQTFEQNILATIHYKPKVLILRMGKVPF 484 Query: 483 IDTTGEANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAIND 542 IDTTGE+ +V+ ++ GG L+ISGIQS+ L K GLY +IG F++HTGEAIN Sbjct: 485 IDTTGESYFRNIVQHFKKQGGVLLISGIQSELKANLDKNGLYAEIGKENFFDHTGEAINC 544 Query: 543 ALKAINHSKCLGCRHAAFRECTAFSGLDEASGRSTFKGRVPAV 585 AL +N KC+GC+H AF ECT S ++ +T K +V A+ Sbjct: 545 ALGHLNTKKCIGCKHFAFHECTGLS--QQSQEINTIKNKVNAL 585 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,202,748,524 Number of extensions: 129998198 Number of successful extensions: 364616 Number of sequences better than 1.0e-05: 2747 Number of HSP's gapped: 357249 Number of HSP's successfully gapped: 2896 Length of query: 593 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 451 Effective length of database: 1,722,912,073 Effective search space: 777033344923 Effective search space used: 777033344923 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 134 (56.2 bits)