BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0012.p
         (108 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B7GHU6.1 B7GHU6_ANOFW Transcriptional regulator, ArsR family          161   2e-38
C3BJ90.1 C3BJ90_9BACI Transcriptional regulator                       150   3e-35
C3B2E0.1 C3B2E0_BACMY Transcriptional regulator                       150   3e-35
C3AKG6.1 C3AKG6_BACMY Transcriptional regulator                       150   3e-35
C2V543.1 C2V543_BACCE Transcriptional regulator                       150   4e-35

>B7GHU6.1 B7GHU6_ANOFW Transcriptional regulator, ArsR family
          Length = 114

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 94/108 (87%)

Query: 1   MNSDIQQFKTEFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKN 60
           MN ++QQFK EFFKALAHP+RIRILELL+EG+KNVNELQ ++G+EGSAVSQQL+VLR+KN
Sbjct: 1   MNLELQQFKAEFFKALAHPLRIRILELLAEGDKNVNELQTLIGTEGSAVSQQLSVLRSKN 60

Query: 61  VVASVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLEGIRSE 108
           +V   K+G  VIYSLRDP+I DLL + KQIF+NHL++AIS+L+ +  E
Sbjct: 61  IVYGTKDGNRVIYSLRDPMIVDLLHIAKQIFNNHLIDAISMLDKMNEE 108


>C3BJ90.1 C3BJ90_9BACI Transcriptional regulator
          Length = 117

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 88/103 (85%)

Query: 1   MNSDIQQFKTEFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKN 60
           M +++QQFK +FFKAL+HP+RI ILELLSEGEK+VNE+Q IL  EGSAVSQQL+VLR+KN
Sbjct: 1   MGNEMQQFKADFFKALSHPLRIGILELLSEGEKSVNEMQTILNKEGSAVSQQLSVLRSKN 60

Query: 61  VVASVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLE 103
           +V   K+G  V+YSLRDP+I DLL V K+IF+NHL++ IS+LE
Sbjct: 61  IVVGTKDGKRVLYSLRDPMIVDLLVVAKKIFNNHLIDTISMLE 103


>C3B2E0.1 C3B2E0_BACMY Transcriptional regulator
          Length = 117

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 88/103 (85%)

Query: 1   MNSDIQQFKTEFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKN 60
           M +++QQFK +FFKAL+HP+RI ILELLSEGEK+VNE+Q IL  EGSAVSQQL+VLR+KN
Sbjct: 1   MGNEMQQFKADFFKALSHPLRIGILELLSEGEKSVNEMQTILNKEGSAVSQQLSVLRSKN 60

Query: 61  VVASVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLE 103
           +V   K+G  V+YSLRDP+I DLL V K+IF+NHL++ IS+LE
Sbjct: 61  IVVGTKDGKRVLYSLRDPMIVDLLVVAKKIFNNHLIDTISMLE 103


>C3AKG6.1 C3AKG6_BACMY Transcriptional regulator
          Length = 117

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 88/103 (85%)

Query: 1   MNSDIQQFKTEFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKN 60
           M +++QQFK +FFKAL+HP+RI ILELLSEGEK+VNE+Q IL  EGSAVSQQL+VLR+KN
Sbjct: 1   MGNEMQQFKADFFKALSHPLRIGILELLSEGEKSVNEMQTILNKEGSAVSQQLSVLRSKN 60

Query: 61  VVASVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLE 103
           +V   K+G  V+YSLRDP+I DLL V K+IF+NHL++ IS+LE
Sbjct: 61  IVVGTKDGKRVLYSLRDPMIVDLLVVAKKIFNNHLIDTISMLE 103


>C2V543.1 C2V543_BACCE Transcriptional regulator
          Length = 133

 Score =  150 bits (379), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 89/103 (86%)

Query: 1   MNSDIQQFKTEFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKN 60
           M +++QQFK +FFKALAHP+RI ILELLSEGEK+VNE+Q+IL  EGSAVSQQL+VLRAKN
Sbjct: 17  MGNEMQQFKADFFKALAHPLRIGILELLSEGEKSVNEIQSILNKEGSAVSQQLSVLRAKN 76

Query: 61  VVASVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLE 103
           +V   K+G  V+YSLRDP+I +LL V ++IF+NHL++ IS+LE
Sbjct: 77  IVVGTKDGKRVLYSLRDPMIMNLLVVARKIFNNHLIDTISMLE 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 501,425,062
Number of extensions: 15631294
Number of successful extensions: 66754
Number of sequences better than 1.0e-05: 730
Number of HSP's gapped: 67334
Number of HSP's successfully gapped: 730
Length of query: 108
Length of database: 3,060,696,203
Length adjustment: 76
Effective length of query: 32
Effective length of database: 2,344,699,063
Effective search space: 75030370016
Effective search space used: 75030370016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)