BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0008.p (307 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B5J0.1 Q2B5J0_9BACI Transaminase EC=2.6.1.- 420 e-116 C2N5R0.1 C2N5R0_BACCE Transaminase mtnE 418 e-115 Q65KJ9.1 Q65KJ9_BACLD YkrV 418 e-115 Q819E9.1 Q819E9_BACCR Aspartate aminotransferase EC=2.6.1.1 416 e-114 C2T5E1.1 C2T5E1_BACCE Transaminase mtnE 416 e-114 >Q2B5J0.1 Q2B5J0_9BACI Transaminase EC=2.6.1.- Length = 390 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/280 (70%), Positives = 228/280 (81%) Query: 1 VKHFEPSMMLQSLPKQFFAALVARAGMASAAGHDVINLGQGNPDMPTPAHIVEALQAAAA 60 +K F S +LQSLPKQFFA LV +A + GHDVINLGQGNPD PTP HIV LQ AA Sbjct: 1 MKIFPQSELLQSLPKQFFATLVQKAARYAGQGHDVINLGQGNPDRPTPPHIVRKLQEAAE 60 Query: 61 NPLNHKYPPFRGHRYLKEAAAGFYEREYGVRLEPDSEVAVLFGGKTGLVEVVQCLLNPGD 120 NPLNHKY PFRG LK AAA FY+REYGV L+P+ E+A+LFGGK GLVE+ QCLLNPG+ Sbjct: 61 NPLNHKYSPFRGQHSLKAAAAEFYKREYGVDLDPEKEIAILFGGKAGLVEIPQCLLNPGE 120 Query: 121 TALVPDPGYPDYWSGIELARAVMERMPLTAENGFLPDYGTISPEAADRAKLMFLNYPNNP 180 T LVPDPGYPDYWSG+ LA+A M MPL EN FLPDYG +S + + A++MFLNYPNNP Sbjct: 121 TILVPDPGYPDYWSGVALAKASMAVMPLKEENHFLPDYGELSEQDIESARMMFLNYPNNP 180 Query: 181 TGAVATEAFFRDTVKFAGQHNICVVHDFAYAALGYDGVRPPSYLQTPGAKDNGIEIYTLS 240 TGA AT+ FF +TV+FA ++ ICVVHDFAY A+G+DG +P S+LQT GAK+ GIEIYTLS Sbjct: 181 TGATATKEFFEETVRFAAENEICVVHDFAYGAIGFDGKKPVSFLQTEGAKETGIEIYTLS 240 Query: 241 KTYNMAGWRVAFAAGNASVIESLNLLQDHMYVSLFGAVQE 280 KTYNMAGWRV FAAGN SVIE++NL+QDH+YVSLFGAVQE Sbjct: 241 KTYNMAGWRVGFAAGNESVIEAINLMQDHLYVSLFGAVQE 280 >C2N5R0.1 C2N5R0_BACCE Transaminase mtnE Length = 395 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/280 (69%), Positives = 226/280 (80%) Query: 1 VKHFEPSMMLQSLPKQFFAALVARAGMASAAGHDVINLGQGNPDMPTPAHIVEALQAAAA 60 +K F+PS ++ SLP QFFA+LVA+ AAGHDVINLGQGNPD PTP HIV+ALQ AA Sbjct: 4 MKSFQPSEIVTSLPTQFFASLVAKVNKVVAAGHDVINLGQGNPDQPTPQHIVKALQDAAE 63 Query: 61 NPLNHKYPPFRGHRYLKEAAAGFYEREYGVRLEPDSEVAVLFGGKTGLVEVVQCLLNPGD 120 ++HKYPPFRGH LKEA A FY+REYGV L P +EVA+LFGGK GLVE+ C NPGD Sbjct: 64 KTIHHKYPPFRGHESLKEAVATFYQREYGVELNPKTEVAILFGGKAGLVELPVCFTNPGD 123 Query: 121 TALVPDPGYPDYWSGIELARAVMERMPLTAENGFLPDYGTISPEAADRAKLMFLNYPNNP 180 T LVPDPGYPDY SG+ LA+A E MPL AEN FLPDY I A+RAKLMFLNYPNNP Sbjct: 124 TILVPDPGYPDYLSGVALAKAQFETMPLLAENNFLPDYTKIDDTIAERAKLMFLNYPNNP 183 Query: 181 TGAVATEAFFRDTVKFAGQHNICVVHDFAYAALGYDGVRPPSYLQTPGAKDNGIEIYTLS 240 TGA A++AFF +T+ FA +HNI VVHDFAY A+G+DG +P S+LQ GAKD GIEIYTLS Sbjct: 184 TGATASKAFFDETIHFANEHNILVVHDFAYGAIGFDGQKPVSFLQADGAKDTGIEIYTLS 243 Query: 241 KTYNMAGWRVAFAAGNASVIESLNLLQDHMYVSLFGAVQE 280 KT+NMAGWR+AFA GN SVIE++NLLQDHMYVS+FGAVQ+ Sbjct: 244 KTFNMAGWRIAFAVGNESVIETINLLQDHMYVSIFGAVQD 283 >Q65KJ9.1 Q65KJ9_BACLD YkrV Length = 396 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/272 (72%), Positives = 222/272 (81%) Query: 4 FEPSMMLQSLPKQFFAALVARAGMASAAGHDVINLGQGNPDMPTPAHIVEALQAAAANPL 63 FE S +L+ LP+QFFA+LV + AAGHDVINLGQGNPD PTP HIV+ + A NP Sbjct: 3 FEHSDVLKQLPEQFFASLVKKVNEKIAAGHDVINLGQGNPDQPTPEHIVDTMAQAVRNPE 62 Query: 64 NHKYPPFRGHRYLKEAAAGFYEREYGVRLEPDSEVAVLFGGKTGLVEVVQCLLNPGDTAL 123 NH+Y FRG R LKEAAA FY+REYGV L+P+ EVAVLFGGK GLVE+ QCLLNPGDT L Sbjct: 63 NHRYSSFRGSRSLKEAAAAFYQREYGVELDPEREVAVLFGGKAGLVELPQCLLNPGDTVL 122 Query: 124 VPDPGYPDYWSGIELARAVMERMPLTAENGFLPDYGTISPEAADRAKLMFLNYPNNPTGA 183 VPDPGYPDYWSG+ELARA ME MPLTA+N FLPDY I E ++AKLM+LNYPNNPTGA Sbjct: 123 VPDPGYPDYWSGVELARANMETMPLTADNQFLPDYSRIPKEVKEKAKLMYLNYPNNPTGA 182 Query: 184 VATEAFFRDTVKFAGQHNICVVHDFAYAALGYDGVRPPSYLQTPGAKDNGIEIYTLSKTY 243 AT AFF +TV+FA + ICVVHDFAY A+GYDG RP S+L+T GAKD GIEIYTLSKTY Sbjct: 183 QATSAFFEETVRFAKSNGICVVHDFAYGAIGYDGKRPVSFLETAGAKDAGIEIYTLSKTY 242 Query: 244 NMAGWRVAFAAGNASVIESLNLLQDHMYVSLF 275 NMAGWRV FA GNASVIE+LNL QDHMYVSLF Sbjct: 243 NMAGWRVGFAVGNASVIEALNLYQDHMYVSLF 274 >Q819E9.1 Q819E9_BACCR Aspartate aminotransferase EC=2.6.1.1 Length = 392 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/280 (69%), Positives = 226/280 (80%) Query: 1 VKHFEPSMMLQSLPKQFFAALVARAGMASAAGHDVINLGQGNPDMPTPAHIVEALQAAAA 60 +K F+PS ++ SLP QFFA+LVA+ AAGHDVINLGQGNPD PTP HIV+ALQ AA Sbjct: 1 MKLFQPSEIVTSLPTQFFASLVAKVNKVVAAGHDVINLGQGNPDQPTPQHIVKALQDAAE 60 Query: 61 NPLNHKYPPFRGHRYLKEAAAGFYEREYGVRLEPDSEVAVLFGGKTGLVEVVQCLLNPGD 120 ++HKYPPFRGH LKEA A FY+REYGV L P +EVA+LFGGK GLVE+ C NPGD Sbjct: 61 KTIHHKYPPFRGHESLKEAVATFYKREYGVELNPKTEVAILFGGKAGLVELPICFTNPGD 120 Query: 121 TALVPDPGYPDYWSGIELARAVMERMPLTAENGFLPDYGTISPEAADRAKLMFLNYPNNP 180 T LVPDPGYPDY SG+ LA+A ERMPL AEN FLPDY I A+RAKLMFLNYPNNP Sbjct: 121 TILVPDPGYPDYLSGVALAKAHFERMPLIAENNFLPDYTNIDASIAERAKLMFLNYPNNP 180 Query: 181 TGAVATEAFFRDTVKFAGQHNICVVHDFAYAALGYDGVRPPSYLQTPGAKDNGIEIYTLS 240 TGA A++ FF +T+ FA +HNI VVHDFAY A+G+DG +P S+LQ GAKD GIEIYTLS Sbjct: 181 TGATASKDFFDETIYFANKHNILVVHDFAYGAIGFDGQKPVSFLQADGAKDIGIEIYTLS 240 Query: 241 KTYNMAGWRVAFAAGNASVIESLNLLQDHMYVSLFGAVQE 280 KT+NMAGWR+AFA GN SVIE++NLLQDHMYVS+FGAVQ+ Sbjct: 241 KTFNMAGWRIAFAVGNESVIETINLLQDHMYVSIFGAVQD 280 >C2T5E1.1 C2T5E1_BACCE Transaminase mtnE Length = 395 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/280 (69%), Positives = 226/280 (80%) Query: 1 VKHFEPSMMLQSLPKQFFAALVARAGMASAAGHDVINLGQGNPDMPTPAHIVEALQAAAA 60 +K F+PS ++ SLP QFFA+LVA+ AAGHDVINLGQGNPD PTP HIV+ALQ AA Sbjct: 4 MKLFQPSEIVTSLPTQFFASLVAKVNKVVAAGHDVINLGQGNPDQPTPQHIVKALQDAAE 63 Query: 61 NPLNHKYPPFRGHRYLKEAAAGFYEREYGVRLEPDSEVAVLFGGKTGLVEVVQCLLNPGD 120 ++HKYPPFRGH LKEA A FY+REYGV L P +EVA+LFGGK GLVE+ C NPGD Sbjct: 64 KTIHHKYPPFRGHESLKEAVATFYKREYGVELNPKTEVAILFGGKAGLVELPICFTNPGD 123 Query: 121 TALVPDPGYPDYWSGIELARAVMERMPLTAENGFLPDYGTISPEAADRAKLMFLNYPNNP 180 T LVPDPGYPDY SG+ LA+A ERMPL AEN FLPDY I A+RAKLMFLNYPNNP Sbjct: 124 TILVPDPGYPDYLSGVALAKAHFERMPLIAENNFLPDYTNIDASIAERAKLMFLNYPNNP 183 Query: 181 TGAVATEAFFRDTVKFAGQHNICVVHDFAYAALGYDGVRPPSYLQTPGAKDNGIEIYTLS 240 TGA A++ FF +T+ FA +HNI VVHDFAY A+G+DG +P S+LQ GAKD GIEIYTLS Sbjct: 184 TGATASKDFFDETIYFANKHNILVVHDFAYGAIGFDGQKPVSFLQADGAKDIGIEIYTLS 243 Query: 241 KTYNMAGWRVAFAAGNASVIESLNLLQDHMYVSLFGAVQE 280 KT+NMAGWR+AFA GN SVIE++NLLQDHMYVS+FGAVQ+ Sbjct: 244 KTFNMAGWRIAFAVGNESVIETINLLQDHMYVSIFGAVQD 283 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,977,577,154 Number of extensions: 85165575 Number of successful extensions: 204147 Number of sequences better than 1.0e-05: 6747 Number of HSP's gapped: 195681 Number of HSP's successfully gapped: 6748 Length of query: 307 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 172 Effective length of database: 1,788,859,178 Effective search space: 307683778616 Effective search space used: 307683778616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)