BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0006.p (211 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W979.1 C2W979_BACCE Nitroreductase 348 1e-94 C3BLL5.1 C3BLL5_9BACI Nitroreductase 348 1e-94 C3EMB8.1 C3EMB8_BACTK Nitroreductase 348 2e-94 B7H8D5.1 B7H8D5_BACC4 Nitroreductase 347 5e-94 C2R9T9.1 C2R9T9_BACCE Nitroreductase 347 5e-94 >C2W979.1 C2W979_BACCE Nitroreductase Length = 212 Score = 348 bits (894), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 166/210 (79%), Positives = 186/210 (88%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N T+ NDFT I+TGRRSIRKYD +VKISK EMTEILTEATLAPSSVNMQPWRFLVI+S E Sbjct: 3 NVTKINDFTEILTGRRSIRKYDTTVKISKEEMTEILTEATLAPSSVNMQPWRFLVIDSEE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 GKA LAPLAKFNQ QVETS+A+IAVF D+ NFD AEEIYGTAVERGLMPAEVKE Q+ L Sbjct: 63 GKATLAPLAKFNQLQVETSSAMIAVFGDLQNFDNAEEIYGTAVERGLMPAEVKEDQMQKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V R+T++IDGGLASMQLMLAARAHGYDT PIGGFEKDQIAE FG++K+RY Sbjct: 123 SAYFSMVSPEVMRDTVLIDGGLASMQLMLAARAHGYDTCPIGGFEKDQIAEAFGLEKDRY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLPID IAQWK Sbjct: 183 VPVMLISIGKAADSGYQSVRLPIDKIAQWK 212 >C3BLL5.1 C3BLL5_9BACI Nitroreductase Length = 212 Score = 348 bits (894), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/210 (78%), Positives = 187/210 (89%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N T+ NDFT I+TGRRSIRKYDP+VKISK EMTEILTEATLAPSSVNMQPWRFLVI+S E Sbjct: 3 NVTKINDFTEILTGRRSIRKYDPAVKISKEEMTEILTEATLAPSSVNMQPWRFLVIDSEE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 GKA LAPLAKFNQ QVETS+A+IAVF D+ NFD AEEIYGTAVERGLMPAEVK+ Q+ L Sbjct: 63 GKATLAPLAKFNQLQVETSSAMIAVFGDLQNFDNAEEIYGTAVERGLMPAEVKKAQMQKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+++ V ++T++IDGGLASMQ MLAARAHGYDT PIGGFEKD+IAE FG+DK+RY Sbjct: 123 SAYFSSVSPEVMKDTVLIDGGLASMQFMLAARAHGYDTCPIGGFEKDKIAEAFGLDKDRY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLPID IAQWK Sbjct: 183 VPVMLISIGKAADSGYKSVRLPIDKIAQWK 212 >C3EMB8.1 C3EMB8_BACTK Nitroreductase Length = 212 Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 163/210 (77%), Positives = 185/210 (88%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N+ +TNDF I+TGRRSIRKYDPSVKISK EMTEILTEATLAPSSVNMQPWRFLVIES E Sbjct: 3 NSVKTNDFNEILTGRRSIRKYDPSVKISKEEMTEILTEATLAPSSVNMQPWRFLVIESDE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 KA LAPLAKFNQ QVETS+A+IA+F D+NNFD AEEIYGTAVERGLMPAEVKE Q+ L Sbjct: 63 AKATLAPLAKFNQSQVETSSAMIALFGDLNNFDNAEEIYGTAVERGLMPAEVKEDQMKKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V ++T++IDGGL +MQ MLAARAHGYDT PIGGFEKDQIAE FG+DKERY Sbjct: 123 SAYFSMVTPEVMKDTVLIDGGLVAMQFMLAARAHGYDTCPIGGFEKDQIAEAFGLDKERY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLPID +A+WK Sbjct: 183 VPVMLISIGKAADSGYQSVRLPIDKVAEWK 212 >B7H8D5.1 B7H8D5_BACC4 Nitroreductase Length = 212 Score = 347 bits (889), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 162/210 (77%), Positives = 185/210 (88%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N+ +TNDF I+TGRRSIRKYDPSVKISK EMTEILTEATLAPSSVNMQPWRF+VIES E Sbjct: 3 NSVKTNDFNEILTGRRSIRKYDPSVKISKEEMTEILTEATLAPSSVNMQPWRFVVIESDE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 KA LAPLAKFNQ QVETS+A+IA+F D+NNFD AEEIYGTAVERGLMPAEVKE Q+ L Sbjct: 63 AKATLAPLAKFNQSQVETSSAMIALFGDLNNFDNAEEIYGTAVERGLMPAEVKEDQMKKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V ++T++IDGGL +MQ MLAARAHGYDT PIGGFEKDQIAE FG+DKERY Sbjct: 123 SAYFSMVTPEVMKDTVLIDGGLVAMQFMLAARAHGYDTCPIGGFEKDQIAEAFGLDKERY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLPID +A+WK Sbjct: 183 VPVMLISIGKAADSGYQSVRLPIDKVAEWK 212 >C2R9T9.1 C2R9T9_BACCE Nitroreductase Length = 212 Score = 347 bits (889), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 162/210 (77%), Positives = 185/210 (88%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N+ +TNDF I+TGRRSIRKYDPSVKISK EMTEILTEATLAPSSVNMQPWRF+VIES E Sbjct: 3 NSVKTNDFNEILTGRRSIRKYDPSVKISKEEMTEILTEATLAPSSVNMQPWRFVVIESDE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 KA LAPLAKFNQ QVETS+A+IA+F D+NNFD AEEIYGTAVERGLMPAEVKE Q+ L Sbjct: 63 AKATLAPLAKFNQSQVETSSAMIALFGDLNNFDNAEEIYGTAVERGLMPAEVKEDQMKKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V ++T++IDGGL +MQ MLAARAHGYDT PIGGFEKDQIAE FG+DKERY Sbjct: 123 SAYFSMVTPEVMKDTVLIDGGLVAMQFMLAARAHGYDTCPIGGFEKDQIAEAFGLDKERY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLPID +A+WK Sbjct: 183 VPVMLISIGKAADSGYQSVRLPIDKVAEWK 212 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,108,593,477 Number of extensions: 40546430 Number of successful extensions: 118791 Number of sequences better than 1.0e-05: 1216 Number of HSP's gapped: 118056 Number of HSP's successfully gapped: 1216 Length of query: 211 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 81 Effective length of database: 1,835,964,253 Effective search space: 148713104493 Effective search space used: 148713104493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)