BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0004.p (144 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BLL6.1 C3BLL6_9BACI Putative uncharacterized protein 154 2e-36 C3AMP4.1 C3AMP4_BACMY Putative uncharacterized protein 154 2e-36 Q81NY0.1 Q81NY0_BACAN Transcriptional regulator, MarR family 153 4e-36 Q6HH53.1 Q6HH53_BACHK Transcriptional regulator, MarR family 153 4e-36 C3NZY1.1 C3NZY1_BACAA Transcriptional regulator, MarR family 153 4e-36 >C3BLL6.1 C3BLL6_9BACI Putative uncharacterized protein Length = 142 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/139 (54%), Positives = 102/139 (73%) Query: 1 LTEYLSEEDRIFERLQALNKAITPTFERCAGISPTRLRLLHELFQVAEISQISLQKYVDI 60 +T S+E I +L LNK ++ FE C G+S +RL L+ +L++V EISQ +LQK V+I Sbjct: 1 MTNSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLYEVDEISQKALQKEVNI 60 Query: 61 DAAAVTRHLKGLEENGMISRRNNPDDNRVTLVSLTAQGRDKIRSYREEKSRFIANLLAGF 120 D AA+TRHLK LE NGMI+RR NPDDNR+TLVSLT GR+KI +++EEK RF A+ L G Sbjct: 61 DNAAITRHLKQLEANGMITRRKNPDDNRITLVSLTKDGRNKIHAFQEEKERFAASALKGL 120 Query: 121 NEQERTALADMLARLQYNI 139 +E+ER L +ML R++ NI Sbjct: 121 SEEERDNLLNMLNRIEANI 139 >C3AMP4.1 C3AMP4_BACMY Putative uncharacterized protein Length = 142 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/139 (54%), Positives = 102/139 (73%) Query: 1 LTEYLSEEDRIFERLQALNKAITPTFERCAGISPTRLRLLHELFQVAEISQISLQKYVDI 60 +T S+E I +L LNK ++ FE C G+S +RL L+ +L++V EISQ +LQK V+I Sbjct: 1 MTNSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLYEVDEISQKALQKEVNI 60 Query: 61 DAAAVTRHLKGLEENGMISRRNNPDDNRVTLVSLTAQGRDKIRSYREEKSRFIANLLAGF 120 D AA+TRHLK LE NGMI+RR NPDDNR+TLVSLT GR+KI +++EEK RF A+ L G Sbjct: 61 DNAAITRHLKQLEANGMITRRKNPDDNRITLVSLTKDGRNKIHAFQEEKERFAASALKGL 120 Query: 121 NEQERTALADMLARLQYNI 139 +E+ER L +ML R++ NI Sbjct: 121 SEEERDNLLNMLNRIEANI 139 >Q81NY0.1 Q81NY0_BACAN Transcriptional regulator, MarR family Length = 142 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/139 (53%), Positives = 101/139 (72%) Query: 1 LTEYLSEEDRIFERLQALNKAITPTFERCAGISPTRLRLLHELFQVAEISQISLQKYVDI 60 +T S+E I +L LNK ++ FE C G+S +RL L+ +LF+V EISQ +LQ+ V+I Sbjct: 1 MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI 60 Query: 61 DAAAVTRHLKGLEENGMISRRNNPDDNRVTLVSLTAQGRDKIRSYREEKSRFIANLLAGF 120 D AA+TRHLK LE NGMI RR NPDDNR+TLVSLT +GR+KI++++EEK RF A+ G Sbjct: 61 DNAAITRHLKQLEANGMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL 120 Query: 121 NEQERTALADMLARLQYNI 139 +E+ER L +ML +Q NI Sbjct: 121 SEEERDNLLNMLIHIQENI 139 >Q6HH53.1 Q6HH53_BACHK Transcriptional regulator, MarR family Length = 142 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/139 (53%), Positives = 101/139 (72%) Query: 1 LTEYLSEEDRIFERLQALNKAITPTFERCAGISPTRLRLLHELFQVAEISQISLQKYVDI 60 +T S+E I +L LNK ++ FE C G+S +RL L+ +LF+V EISQ +LQ+ V+I Sbjct: 1 MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI 60 Query: 61 DAAAVTRHLKGLEENGMISRRNNPDDNRVTLVSLTAQGRDKIRSYREEKSRFIANLLAGF 120 D AA+TRHLK LE NGMI RR NPDDNR+TLVSLT +GR+KI++++EEK RF A+ G Sbjct: 61 DNAAITRHLKQLEANGMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL 120 Query: 121 NEQERTALADMLARLQYNI 139 +E+ER L +ML +Q NI Sbjct: 121 SEEERDNLLNMLIHIQENI 139 >C3NZY1.1 C3NZY1_BACAA Transcriptional regulator, MarR family Length = 142 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/139 (53%), Positives = 101/139 (72%) Query: 1 LTEYLSEEDRIFERLQALNKAITPTFERCAGISPTRLRLLHELFQVAEISQISLQKYVDI 60 +T S+E I +L LNK ++ FE C G+S +RL L+ +LF+V EISQ +LQ+ V+I Sbjct: 1 MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI 60 Query: 61 DAAAVTRHLKGLEENGMISRRNNPDDNRVTLVSLTAQGRDKIRSYREEKSRFIANLLAGF 120 D AA+TRHLK LE NGMI RR NPDDNR+TLVSLT +GR+KI++++EEK RF A+ G Sbjct: 61 DNAAITRHLKQLEANGMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL 120 Query: 121 NEQERTALADMLARLQYNI 139 +E+ER L +ML +Q NI Sbjct: 121 SEEERDNLLNMLIHIQENI 139 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 743,538,511 Number of extensions: 26128771 Number of successful extensions: 87123 Number of sequences better than 1.0e-05: 380 Number of HSP's gapped: 87642 Number of HSP's successfully gapped: 380 Length of query: 144 Length of database: 3,060,696,203 Length adjustment: 107 Effective length of query: 37 Effective length of database: 2,052,647,598 Effective search space: 75947961126 Effective search space used: 75947961126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)