BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0002.p (345 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7Y0.1 B3K7Y0_9BACI Lipoate-protein ligase A-like protein 199 5e-49 B1DD06.1 B1DD06_9BACL Lipoate-protein ligase A-like protein 192 5e-47 B7GML0.1 B7GML0_ANOFW Lipoate-protein ligase A 175 7e-42 Q9K6A7.1 Q9K6A7_BACHD BH3822 protein 167 2e-39 B1I022.1 B1I022_LYSSC Hypothetical ywfL protein 165 5e-39 >B3K7Y0.1 B3K7Y0_9BACI Lipoate-protein ligase A-like protein Length = 285 Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 108/204 (52%), Positives = 134/204 (65%), Gaps = 7/204 (3%) Query: 86 DMLLPFAFEETLCRDVGTGLVPPSVHLWSHPGGVALGLRDSKLPRAAEAMAELEGKGYRT 145 D+L FA +E LCR G G P HLW HP +G+RDS+LP+A + A L GY T Sbjct: 26 DVLYHFALDELLCRLTGEG-GPAICHLWRHPRAFVMGVRDSRLPQALQGEAHLRYLGYDT 84 Query: 146 AVRHSGGAAVPLDAGVVNVSLLL-RKSPGKL-DFHDDFRLLASLITEAVAVSHPQAAAQI 203 AVRHSGGAAVPLDAGVVN+SL+L S G DFH DF ++ LI EA+ + + Sbjct: 85 AVRHSGGAAVPLDAGVVNLSLILPFASAGPAPDFHQDFEIMVELIREALRGT----GQNV 140 Query: 204 RAGEVAGSYCPGDFDLAIGGRKFCGIAQRRQSSAYFVHAFVIVSGSGLERGQLIRGFYDT 263 GE+AG++CPG FDL+IGG KFCGIAQRRQ A+ + AF+I GSG ER +L+R FYD Sbjct: 141 DTGEIAGAFCPGTFDLSIGGLKFCGIAQRRQRRAFIIQAFIIAEGSGSERARLVRSFYDI 200 Query: 264 AADGDDALAYPRVIPQTLAALGEL 287 AA+G D YP V + A+L EL Sbjct: 201 AAEGADPKHYPLVEADSTASLEEL 224 >B1DD06.1 B1DD06_9BACL Lipoate-protein ligase A-like protein Length = 277 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/262 (46%), Positives = 151/262 (57%), Gaps = 15/262 (5%) Query: 86 DMLLPFAFEETLCRDVGTGLVPPSVHLWSHPGGVALGLRDSKLPRAAEAMAELEGKGYRT 145 D L FA +E LCR G G P HLW HP +GLRDS+LP A A LE G+ T Sbjct: 27 DPLYAFALDELLCRSTGRG-GPAVCHLWRHPRAFIMGLRDSRLPSAGAARDLLETAGWDT 85 Query: 146 AVRHSGGAAVPLDAGVVNVSLLLRKSPG-KLDFHDDFRLLASLITEAVAVSHPQAAAQIR 204 AVR+SGGAAVPLD GVVN+SL+L KS FHD+F + LI A+ S Q+ Sbjct: 86 AVRNSGGAAVPLDTGVVNLSLILPKSDVLDFHFHDNFEQMYELIRLALQAS----GRQVD 141 Query: 205 AGEVAGSYCPGDFDLAIGGRKFCGIAQRRQSSAYFVHAFVIVSGSGLERGQLIRGFYDTA 264 GE+ G+YCPGDFDL+IGG KFCGIAQRRQ +A + AF++ GSG ER +L+R FYD A Sbjct: 142 KGEIGGAYCPGDFDLSIGGYKFCGIAQRRQVNAVIIQAFIVAEGSGAERARLVRSFYDIA 201 Query: 265 ADGDDALAYPRVIPQTLAALGELG--GPASAAVFAEGFRLALTRRGVHLQSAGQLGQTAG 322 A G DA +P V + A+L EL GP ++ FA + + L + G L Sbjct: 202 AAGADAADFPVVTADSTASLEELAGLGPEASLAFAAAVKQVIMAAQEGLPAVGSL----- 256 Query: 323 YSLQYADPRVLEAARVLRERYA 344 + +V E A L RYA Sbjct: 257 --ILPTAEQVREMAETLHNRYA 276 >B7GML0.1 B7GML0_ANOFW Lipoate-protein ligase A Length = 297 Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 123/206 (59%), Gaps = 7/206 (3%) Query: 83 PGGDMLLPFAFEETLCRDVGTGLVPPSVHLWSHPGGVALGLRDSKLPRAAEAMAELEGKG 142 P D FAF++ LC VG+G P V LW H V LG++D+KLP + +A L +G Sbjct: 43 PSFDAKQSFAFDDALCESVGSGQSQPVVRLWVHHQTVVLGIQDTKLPYIEKGLAYLHEQG 102 Query: 143 YRTAVRHSGGAAVPLDAGVVNVSLLLRKSPGKLDFHDDFRLLASLITEAVAVSHPQAAAQ 202 +RT VR+SGG AV LD GV+NVSL+ + +D + +A+LI +H A Sbjct: 103 WRTIVRNSGGLAVVLDEGVLNVSLIFPDTKKGIDIDRGYEAMATLI------AHMLPEAH 156 Query: 203 IRAGEVAGSYCPGDFDLAIGGRKFCGIAQRRQSSAYFVHAFVIVSGSGLERGQLIRGFYD 262 ++ GEV GSYCPG FDL+I G+KF GI+QRR V ++ V+GSG ER IR FY+ Sbjct: 157 VQTGEVVGSYCPGSFDLSINGKKFAGISQRRIRGGVAVQVYICVNGSGAERAGWIREFYE 216 Query: 263 TAADGDDA-LAYPRVIPQTLAALGEL 287 + G+ YP ++P T+A+L EL Sbjct: 217 RSLAGEQTKFTYPTIVPHTMASLSEL 242 >Q9K6A7.1 Q9K6A7_BACHD BH3822 protein Length = 278 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 126/208 (60%), Gaps = 6/208 (2%) Query: 83 PGGDMLLPFAFEETLCRDVGTGLVPPSVHLWSHPGGVALGLRDSKLPRAAEAMAELEGKG 142 P L FA+++TLC +G PP++ W H V LG++DS+LP+ + L+G Sbjct: 23 PTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQ 82 Query: 143 YRTAVRHSGGAAVPLDAGVVNVSLLLRKSPGKLDFHDDFRLLASLITEAVAVSHPQAAAQ 202 + VR+SGG AV LD+G++N+SL+L++ G D + L+ LI ++ H + Q Sbjct: 83 HDVIVRNSGGLAVVLDSGILNLSLVLKEEKG-FSIDDGYELMYELIC-SMFQDHRE---Q 137 Query: 203 IRAGEVAGSYCPGDFDLAIGGRKFCGIAQRRQSSAYFVHAFVIVSGSGLERGQLIRGFYD 262 I A E+ GSYCPG +DL+I G+KF GI+QRR V ++ VSGSG ER ++IR FYD Sbjct: 138 IEAREIVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYD 197 Query: 263 TAADGD-DALAYPRVIPQTLAALGELGG 289 A G YPR+ P+T+A+L EL G Sbjct: 198 KAVAGQPTKFVYPRIKPETMASLSELLG 225 >B1I022.1 B1I022_LYSSC Hypothetical ywfL protein Length = 278 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 123/201 (61%), Gaps = 5/201 (2%) Query: 88 LLPFAFEETLCRDVGTGLVPPSVHLWSHPGGVALGLRDSKLPRAAEAMAELEGKGYRTAV 147 L FA ++TLC+ VG + PP++ W H V LG++D +LP + M LE +GY+ V Sbjct: 25 LESFATDDTLCQLVGQLVSPPTIRTWVHEASVVLGIQDHRLPYVQQGMDLLESRGYQPIV 84 Query: 148 RHSGGAAVPLDAGVVNVSLLLRKSPGKLDFHDDFRLLASLITEAVAVSHPQAAAQIRAGE 207 R+SGG AV LD G++N+S++L + L +D + ++ L+ P+ A +I A E Sbjct: 85 RNSGGLAVVLDEGILNISIVLSEQMDSLSINDGYDVMVDLVKGLF----PEVAEKIEAYE 140 Query: 208 VAGSYCPGDFDLAIGGRKFCGIAQRRQSSAYFVHAFVIVSGSGLERGQLIRGFYDTAADG 267 + GSYCPG +DL+I G+KF GI+QRR V ++ + GSG +R LIR FY+ + Sbjct: 141 IVGSYCPGSYDLSIEGKKFAGISQRRLRQGVAVQIYLCIEGSGSQRAALIRDFYEESLQQ 200 Query: 268 DDA-LAYPRVIPQTLAALGEL 287 ++ YP+++P+ +A+L EL Sbjct: 201 EETKFNYPQIVPEVMASLSEL 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,870,439,212 Number of extensions: 75170044 Number of successful extensions: 171700 Number of sequences better than 1.0e-05: 217 Number of HSP's gapped: 171405 Number of HSP's successfully gapped: 217 Length of query: 345 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 209 Effective length of database: 1,779,438,163 Effective search space: 371902576067 Effective search space used: 371902576067 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)