BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0006.p
         (331 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4F6.1 B3K4F6_9BACI ABC transporter related                         145   7e-33
A6CPC1.1 A6CPC1_9BACI ABC transporter, ATPase component               118   1e-24
Q2B457.1 Q2B457_9BACI Putative nitrate/sulfonate/bicarbonate ABC...   115   4e-24
B1DJN4.1 B1DJN4_9BACL ABC transporter related                         114   1e-23
Q2KWY8.1 Q2KWY8_BORA1 ABC transporter, ATP-binding protein            112   7e-23

>B3K4F6.1 B3K4F6_9BACI ABC transporter related
          Length = 277

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 84/116 (72%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           LEV  +   F  RR E  VLD +SL+V+P EFVS++GPSG GKSTLFHIIGGL  PDAG+
Sbjct: 26  LEVRSLHITFRERRSEVHVLDGLSLQVQPGEFVSLIGPSGSGKSTLFHIIGGLTAPDAGS 85

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGEPXXXXXXXXXHWL 186
           V M+G+ VTG++G I+YMPQQPALFPWRT+EDNVLL  EL+G            W+
Sbjct: 86  VLMDGQDVTGEKGRIAYMPQQPALFPWRTVEDNVLLPEELRGTSKTTARENARSWM 141


>A6CPC1.1 A6CPC1_9BACI ABC transporter, ATPase component
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 75/103 (72%), Gaps = 4/103 (3%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           + ++ + K+F       L+LD +SL V   EF+SI+GPSG GKSTLFH+IGGL  P+ GT
Sbjct: 1   MRIDNLDKSF----DGQLILDDLSLSVGDGEFLSILGPSGSGKSTLFHLIGGLYSPEKGT 56

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGE 173
           + ++G+ + G+RG ISYMPQ P+L PWRT+EDNVLL  EL G+
Sbjct: 57  IQIDGENINGRRGYISYMPQAPSLLPWRTVEDNVLLGQELSGK 99


>Q2B457.1 Q2B457_9BACI Putative nitrate/sulfonate/bicarbonate ABC
           transporter, ATP-binding protein
          Length = 248

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 76/102 (74%), Gaps = 4/102 (3%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           L ++ ++K+F     E +VL+ +SL+V   EFVS++GPSG GKST+F++IGGL  PD G+
Sbjct: 4   LHLDNISKSF----GEQMVLNNLSLEVNEGEFVSLLGPSGSGKSTIFNLIGGLLLPDEGS 59

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKG 172
           + MNG+++ GQ+G +SYMPQ P+L PWRT+  NVLL  EL G
Sbjct: 60  IQMNGQSINGQKGFMSYMPQTPSLLPWRTVLQNVLLGQELTG 101


>B1DJN4.1 B1DJN4_9BACL ABC transporter related
          Length = 249

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 75/116 (64%), Gaps = 2/116 (1%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           LE+ G+ K+F   R+   VL+ +SL +   EFVSI+GPSG GK+TLF +IGGLEQP  G 
Sbjct: 6   LELKGIRKSFDAGRKN--VLNGLSLTIAENEFVSIIGPSGSGKTTLFQLIGGLEQPTGGE 63

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGEPXXXXXXXXXHWL 186
           V ++GK VTG RG ISYMPQQ +L PWR++  N+ LA E+ G            WL
Sbjct: 64  VWIDGKQVTGSRGHISYMPQQASLMPWRSVSANIELALEIAGTERKEAGRQAREWL 119


>Q2KWY8.1 Q2KWY8_BORA1 ABC transporter, ATP-binding protein
          Length = 262

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 73/116 (62%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           L+V  ++K F   +    VLD +SL     EFVSI+GPSGCGKSTLF+I+ GL  PDAG+
Sbjct: 7   LQVRHISKRFQGEQGAVQVLDDISLDAGSGEFVSIIGPSGCGKSTLFNILTGLLDPDAGS 66

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGEPXXXXXXXXXHWL 186
           + ++GK V   RG + YM Q+  L PWRT+ DNV++  EL+G P         H+L
Sbjct: 67  ILLDGKPVADLRGRVGYMLQRDLLMPWRTVLDNVIVGLELRGAPRAESVERARHYL 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,628,327,962
Number of extensions: 60359918
Number of successful extensions: 299535
Number of sequences better than 1.0e-05: 17885
Number of HSP's gapped: 305511
Number of HSP's successfully gapped: 17922
Length of query: 331
Length of database: 3,060,696,203
Length adjustment: 136
Effective length of query: 195
Effective length of database: 1,779,438,163
Effective search space: 346990441785
Effective search space used: 346990441785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)