BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0234.0003.p (356 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4G0.1 B3K4G0_9BACI NMT1/THI5 like domain protein 460 e-127 A6CPB8.1 A6CPB8_9BACI ABC transporter, substrate-binding protein... 432 e-119 B1DJN7.1 B1DJN7_9BACL NMT1/THI5 like domain protein 429 e-118 Q2B454.1 Q2B454_9BACI ABC transporter, substrate-binding protein... 414 e-114 A3IC13.1 A3IC13_9BACI ABC transporter, substrate-binding protein... 410 e-112 >B3K4G0.1 B3K4G0_9BACI NMT1/THI5 like domain protein Length = 343 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/300 (72%), Positives = 258/300 (86%) Query: 55 KELTKIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGI 114 ++L +++ LDW+ NTNHTGLYAAKELGYY EEGL+V+IVQPGA G DT+V SG+ FGI Sbjct: 42 EKLRDVQLMLDWSANTNHTGLYAAKELGYYEEEGLNVQIVQPGAGGTDTLVASGKVPFGI 101 Query: 115 SAQEALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAA 174 S QE +TLAR Q +P+VSIAAIIQHNTSGFAAPKD+ I DFEGK+YGGWGSP EEA Sbjct: 102 SYQEGVTLARTQGLPLVSIAAIIQHNTSGFAAPKDKGIVKAGDFEGKSYGGWGSPVEEAV 161 Query: 175 MKAIMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYLK 234 MK+IM+ +G DV KV +VN+G+AD+FTAVKRDIDFAWIFYAWTGIEAELR EP+DM+Y+K Sbjct: 162 MKSIMEIDGADVSKVNMVNMGDADYFTAVKRDIDFAWIFYAWTGIEAELRNEPLDMIYVK 221 Query: 235 DYAPQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDLD 294 DY+ QLDYYTPV+ T+EK I E PELVKAF+ AT+KGY YAI PE+AAA+L+KAVP+LD Sbjct: 222 DYSEQLDYYTPVIVTNEKLIQEDPELVKAFMRATSKGYDYAIQHPEDAAALLTKAVPELD 281 Query: 295 PKLVLASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLPQ 354 +LVLASQKWLSP+Y+DDAARWGEQKAEVW YADWM+ KLL+K LDA SAFTN++LP+ Sbjct: 282 AELVLASQKWLSPRYQDDAARWGEQKAEVWSGYADWMFERKLLEKELDADSAFTNEFLPE 341 >A6CPB8.1 A6CPB8_9BACI ABC transporter, substrate-binding protein, putative Length = 334 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/298 (66%), Positives = 243/298 (81%) Query: 57 LTKIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGISA 116 L ++ V LDWTPNTNHTGLY AKE GY+ EEGL+VEI+ PG AGAD++V SG+A FG+ Sbjct: 37 LKEVSVVLDWTPNTNHTGLYVAKEKGYFEEEGLEVEIIMPGEAGADSIVASGQAEFGVGY 96 Query: 117 QEALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAAMK 176 QE +T AR+QDVP+VSIAA+IQHNTSGFA+P +NI+TPKDFEGKTYGGWGSP EEA M Sbjct: 97 QEGVTQARVQDVPLVSIAAVIQHNTSGFASPAGKNIETPKDFEGKTYGGWGSPVEEAVMA 156 Query: 177 AIMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYLKDY 236 +IM E DV KV VN+G++DFFTAV+RDIDFAWI+Y WTGIEAELR E ++M+YL DY Sbjct: 157 SIMKQENADVSKVDFVNMGDSDFFTAVQRDIDFAWIYYGWTGIEAELRNEDINMIYLTDY 216 Query: 237 APQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDLDPK 296 + +LDYYTPVLTT+E+ I++ PE V+AFLAA +KGY +AID PEEAA +L A PDLD Sbjct: 217 SEKLDYYTPVLTTNEEMISDDPETVEAFLAAASKGYNFAIDNPEEAAQVLIDAAPDLDED 276 Query: 297 LVLASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLPQ 354 LV SQ+WL+ KY DDA RWGEQK EVW+NYA+WM+ +LL+ LDA AFTN++LP+ Sbjct: 277 LVKRSQEWLASKYTDDAPRWGEQKLEVWENYAEWMFENELLESELDAEKAFTNEFLPE 334 >B1DJN7.1 B1DJN7_9BACL NMT1/THI5 like domain protein Length = 344 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/300 (66%), Positives = 245/300 (81%) Query: 55 KELTKIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGI 114 K LTK+KV LDWTPNTNHTGLY A++ GY+ E+GLDVEI+QPG GAD MV SG A FG+ Sbjct: 44 KPLTKVKVVLDWTPNTNHTGLYVARDKGYFKEQGLDVEIIQPGQDGADKMVASGGAEFGV 103 Query: 115 SAQEALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAA 174 QE+LT+AR+ VP+VS+AA+IQHNTSGFA+P + I +PK FEGKTYGGWG+P EEA Sbjct: 104 GYQESLTMARIAGVPLVSVAAVIQHNTSGFASPASKGIDSPKKFEGKTYGGWGAPVEEAV 163 Query: 175 MKAIMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYLK 234 + ++M E DV KVK+++IG+ DFFTAVKRDIDFAWI+YAWTG+EAELRGE ++M+YL Sbjct: 164 IGSLMQEENADVSKVKMLSIGDTDFFTAVKRDIDFAWIYYAWTGVEAELRGEKLNMVYLT 223 Query: 235 DYAPQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDLD 294 DY+ +LDYYTP+L TSEK IAE PE+VKAF+A KGYQ+AID PE+AA +L KA PDL+ Sbjct: 224 DYSDKLDYYTPLLETSEKMIAEKPEIVKAFVAGAAKGYQFAIDHPEDAAEVLIKAEPDLN 283 Query: 295 PKLVLASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLPQ 354 LV ASQKWLSPKY DDA++WG QK +VW NY+ WM+ KLL+K L+A AFTND+LP+ Sbjct: 284 ADLVRASQKWLSPKYTDDASQWGVQKKDVWVNYSHWMFEHKLLEKELEADKAFTNDFLPK 343 >Q2B454.1 Q2B454_9BACI ABC transporter, substrate-binding protein, putative Length = 332 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/300 (63%), Positives = 237/300 (79%) Query: 55 KELTKIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGI 114 ++L KI V LDWTPNTNHTGLYAAK ++ E GLD EI+ PG AGAD +V SG+A FG+ Sbjct: 33 QDLEKITVVLDWTPNTNHTGLYAAKAKNFFKENGLDAEIIMPGDAGADQLVASGKADFGV 92 Query: 115 SAQEALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAA 174 S QE++T AR+Q VP+VS+AA+IQHNTSGFA+P +NI +PKDF GK YGGWGSP EE+ Sbjct: 93 SYQESITQARVQGVPLVSVAAVIQHNTSGFASPAAKNIDSPKDFAGKKYGGWGSPVEESV 152 Query: 175 MKAIMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYLK 234 + ++M E DV V VN+G+ADFFTAVKRDIDFAWI+Y WTG+EAELRGE ++M+YL Sbjct: 153 IASLMKQENADVSDVSFVNMGDADFFTAVKRDIDFAWIYYGWTGVEAELRGEDLNMVYLT 212 Query: 235 DYAPQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDLD 294 DY+ +LDYYTPVL T+EK I P+ V+AF+ A ++GYQ+AI PEEAA IL +A PDLD Sbjct: 213 DYSDKLDYYTPVLATNEKMIKNSPDTVRAFVKAASQGYQFAIKNPEEAADILLEAAPDLD 272 Query: 295 PKLVLASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLPQ 354 +LV SQ+WLSPKY+DDA +WGEQ EVW+NYA WMY KLLD LDA AFTN++LP+ Sbjct: 273 AELVKKSQEWLSPKYQDDAEQWGEQSIEVWENYAQWMYENKLLDSELDAEKAFTNEFLPE 332 >A3IC13.1 A3IC13_9BACI ABC transporter, substrate-binding protein, putative Length = 331 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 186/296 (62%), Positives = 239/296 (80%) Query: 59 KIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGISAQE 118 K+ V LDWTPNTNHTGLY AK+LGY+ E+GLDV+I+ PG AGAD +V SG+A FG+S QE Sbjct: 32 KVSVVLDWTPNTNHTGLYVAKKLGYFEEQGLDVDIIMPGEAGADQLVASGKAEFGVSYQE 91 Query: 119 ALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAAMKAI 178 +T AR+QDVP+VSIAAIIQHNTSGFA+ + + I +PKDFEGKTYGGWG+P E+A ++++ Sbjct: 92 GITQARVQDVPLVSIAAIIQHNTSGFASVESKGITSPKDFEGKTYGGWGAPLEQAVLQSL 151 Query: 179 MDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYLKDYAP 238 M E D+ K+ +VN G+ DFFT +K+DIDFAWI+YAWTGIEAELRGE ++MLYL DY+ Sbjct: 152 MQKENADINKLDIVNAGDLDFFTMMKKDIDFAWIYYAWTGIEAELRGEKINMLYLTDYSD 211 Query: 239 QLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDLDPKLV 298 QLDYYTPVL T+EK + +P++VKAF+AA +KGY+YAI+ P EAA IL + PDLD +LV Sbjct: 212 QLDYYTPVLATNEKMLQNNPDIVKAFVAAASKGYEYAIEHPNEAADILLEEAPDLDKELV 271 Query: 299 LASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLPQ 354 SQ+WL+ KY+DDA +WGEQK VW+NYA WM K+L+ DA AFTN++LP+ Sbjct: 272 HKSQEWLADKYQDDAKQWGEQKLSVWENYAKWMSSNKVLEGEFDAKQAFTNEFLPK 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,982,745,892 Number of extensions: 80112750 Number of successful extensions: 211642 Number of sequences better than 1.0e-05: 757 Number of HSP's gapped: 210754 Number of HSP's successfully gapped: 757 Length of query: 356 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 219 Effective length of database: 1,770,017,148 Effective search space: 387633755412 Effective search space used: 387633755412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)