BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0234.0001.p (415 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0GP78.1 C0GP78_9DELT Sensor protein EC=2.7.13.3 216 3e-54 A5D5Z4.1 A5D5Z4_PELTS Sensor protein EC=2.7.13.3 211 8e-53 A1SZV1.1 A1SZV1_PSYIN Sensor protein EC=2.7.13.3 192 4e-47 B3JZ09.1 B3JZ09_9DELT Sensor protein EC=2.7.13.3 190 2e-46 Q6MHL3.1 Q6MHL3_BDEBA Sensor protein EC=2.7.13.3 189 5e-46 >C0GP78.1 C0GP78_9DELT Sensor protein EC=2.7.13.3 Length = 804 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 206/410 (50%), Gaps = 32/410 (7%) Query: 2 TCLSTWSGXXXXAAAKRGNVLKWQVADSIDHTLSGDSSKILQVLINLVGNGLKFTQNGEV 61 T + +G A ++G L + + + H L GD ++ QVL+NL+GN +KFT G+V Sbjct: 368 TTVKDSAGILNYQAMEKGLKLGYVIHPGVHHCLLGDEGRLSQVLVNLLGNAIKFTSQGQV 427 Query: 62 EVTVSLVQEDAARQHLCFAVRDEGIGISLKDQAALFRPYSQISSESAMAVEGTGLGLSIC 121 ++ VS VQE+A L F V D GIGI + Q LF P+ Q+++ + GTGLGL+IC Sbjct: 428 DLEVSPVQEEADHVRLLFEVHDTGIGIPEEKQDQLFTPFHQLNTSVTRSFGGTGLGLAIC 487 Query: 122 KSLVELMGGTITVDSAPGRGSTFRFEVA-------LDKTLSLKESSPGGEAVLPEPCFSG 174 KSLV++MGG I V S+ GRGSTF F LDK K S PG + P Sbjct: 488 KSLVQMMGGEIGVKSSKGRGSTFWFTAGFEKDPAPLDKEAQEKISDPGQASCRPH---LD 544 Query: 175 QPVLVAEDNGLNSTXXXXXXXXXGITDVQLVSSGKEVIEAWQQGEYGLILMDSRLPGMNG 234 +L+ EDN N G+T+ + ++G+E ++ + + L+LMD R+P M+G Sbjct: 545 SRILIVEDNPTNQMVARAVLKKLGLTNSTVANNGREALDILARENFDLVLMDCRMPEMDG 604 Query: 235 GEAVRRIRELESSGTRPRVPIIGVTGDGSEEGRAQFFQAGLDDWAVKPLNLERLRQLLDR 294 EA RRIRE ++S P+VPI+ +T + R + QAG+ D+ KP+ + L ++++R Sbjct: 605 FEATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEEIINR 664 Query: 295 WFSPGP---------YIPVLDADTIS----------GIREMDGEEAPQLLQALVEMFKDD 335 P P LDA ++ R M EE LLQ +++ F + Sbjct: 665 QLRPAQGGLKNARQEDTPGLDASSVHDQGHFVEAELAERVMHDEE---LLQEILQQFIQE 721 Query: 336 TPXXXXXXXXXXXXXXXPEMGAVAHGLKSGSLSIGAKYFAHLCAAVERHA 385 P + + AH LK S +I A+ + A+E+ A Sbjct: 722 APKRMQNLEKSLHSKNPEQARSYAHALKGISANISARNLSEKAWAMEKAA 771 >A5D5Z4.1 A5D5Z4_PELTS Sensor protein EC=2.7.13.3 Length = 2071 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 138/399 (34%), Positives = 200/399 (50%), Gaps = 30/399 (7%) Query: 15 AAKRGNVLKWQVADSIDHTLSGDSSKILQVLINLVGNGLKFTQNGEVEVTVSLVQEDAAR 74 A ++ +LK+ +A + TL GD ++ QVL+NL+GN +KFT+ GE+ ++ + + Sbjct: 1644 ARQKSLLLKYHIAPDVPGTLQGDPIRLRQVLLNLLGNAVKFTERGEISLSAFVEGREPDS 1703 Query: 75 QHLCFAVRDEGIGISLKDQAALFRPYSQISSESAMAVEGTGLGLSICKSLVELMGGTITV 134 + F V+D GIGI + ++ LFRP++Q SA G GLGLSICK LVELMGG I Sbjct: 1704 LTVRFEVQDTGIGIPEEARSMLFRPFTQAGPSSAGRYGGAGLGLSICKRLVELMGGRIGF 1763 Query: 135 DSAPGRGSTFRFEVALDKTLSLKESSPGGEAVLP----EPCFSGQPVLVAEDNGLNSTXX 190 +S GRGSTF F V S+ +P G + P P + P+LVAED +N Sbjct: 1764 ESEEGRGSTFWFSVPFAAGKSM--DAPSGASPAPVRPLTPKWQPGPILVAEDFAINQKLI 1821 Query: 191 XXXXXXXGITDVQLVSSGKEVIEAWQQGEYGLILMDSRLPGMNGGEAVRRIRELESSGTR 250 G+ + +G+E +EA+ + Y L+LMD R+P M+G EA R IR LE+ R Sbjct: 1822 QAQLRKLGLA-ADVAGNGREAVEAFSRNSYALVLMDCRMPVMDGFEATRAIRSLEALRGR 1880 Query: 251 PRVPIIGVTGDGSEEGRAQFFQAGLDDWAVKPLNLERLRQLLDRWFSPGPYIPVL----- 305 R PII T R + AG+DD+ KP+ +E L+++L RW P P +P+ Sbjct: 1881 -RTPIIATTAAAMPGEREKCLSAGMDDYLTKPVRMEDLQRVLSRWL-PAPELPLAGESGN 1938 Query: 306 ------DADTISGIREMDGEEAPQLLQA----------LVEMFKDDTPXXXXXXXXXXXX 349 +A + G+ ++G+ +LL L+ F D P Sbjct: 1939 LPRPGKEALQLPGLTAVNGDRLGELLNTTGEDVHFLCRLIRAFLRDMPEKLKSLRSALRQ 1998 Query: 350 XXXPEMGAVAHGLKSGSLSIGAKYFAHLCAAVERHAREG 388 AHG+KS S +GA FA LC E A G Sbjct: 1999 GDAATARLQAHGMKSSSSILGAALFADLCREAEELAAGG 2037 >A1SZV1.1 A1SZV1_PSYIN Sensor protein EC=2.7.13.3 Length = 968 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/407 (30%), Positives = 197/407 (48%), Gaps = 35/407 (8%) Query: 15 AAKRGNVLKWQVADSIDHTLSGDSSKILQVLINLVGNGLKFTQNGEVEVTVSLVQEDAAR 74 A K+G L + + +D + GD ++ QVL NL+ N +KFTQ GEV V+ + ++ A Sbjct: 529 AKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQSATA 588 Query: 75 QHLCFAVRDEGIGISLKDQAALFRPYSQISSESAMAVEGTGLGLSICKSLVELMGGTITV 134 L VRD GIGI+ ++Q +F +SQ S + GTGLGL+I K L+E+MGG+I Sbjct: 589 LSLQIRVRDSGIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGF 648 Query: 135 DSAPGRGSTFRFEVALDKTLSL--KESSPGGEAVLPEPCFSGQPVLVAEDNGLNSTXXXX 192 S G+G+TF F++ L T + E+ P + G+ +L+ ED+ +N Sbjct: 649 SSELGQGTTFWFDLKLKPTEQILSDETLPVSTLEQQQITLQGK-ILLVEDHPVNQEFAMQ 707 Query: 193 XXXXXGITDVQLVSSGKEVIEAWQQGEYGLILMDSRLPGMNGGEAVRRIRELESSGTRPR 252 G+ D+ L +G E ++ ++ Y L+LMD ++P M+G A IR+ E PR Sbjct: 708 ILSGLGV-DLHLAGNGVEALKQLKEQNYDLVLMDCQMPVMDGYRATELIRQKEQENGSPR 766 Query: 253 VPIIGVTGDGSEEGRAQFFQAGLDDWAVKPLNLERLRQLLDRWFSPG------------- 299 +PII +T + E R + AG+DD+ KP N ++ LL RW S Sbjct: 767 LPIIALTANAMIEDRQRCISAGMDDYLSKPFNKAQIVVLLQRWLSADSGLMAVVEPEMAV 826 Query: 300 ----------PYI-----PVLDADTISGIREMDGEEAPQLLQALVEMFKDDTPXXXXXXX 344 P I P+L A I+ ++EMD + +V+ + + +P Sbjct: 827 EKATATKVIEPEIAVSNEPLLPA-IIAQLQEMDDNDG--FFNRIVDAYLEKSPADIEQLN 883 Query: 345 XXXXXXXXPEMGAVAHGLKSGSLSIGAKYFAHLCAAVERHAREGEYE 391 + AH KS S ++GA A LC +E+ R+ + E Sbjct: 884 QGLARSDPEALRKAAHSFKSSSYNLGAHKLAELCKTLEKRVRDKDLE 930 >B3JZ09.1 B3JZ09_9DELT Sensor protein EC=2.7.13.3 Length = 588 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 167/294 (56%), Gaps = 14/294 (4%) Query: 18 RGNVLKWQVADSIDHTLSGDSSKILQVLINLVGNGLKFTQNGEVEVTVSLVQEDAARQHL 77 +G ++ Q+ + + ++GD +++ QVLIN+V NGLKFT+ G V+V VSLV+++ Q++ Sbjct: 290 KGVAVELQIEEDVPRCVAGDPNRLRQVLINVVNNGLKFTEKGSVQVRVSLVEQNQNGQYV 349 Query: 78 CFAVRDEGIGISLKDQAALFRPYSQISSESAMAVEGTGLGLSICKSLVELMGGTITVDSA 137 F V+D GIGI A+F ++Q+ + GTGLGL+I K LVELMGG I V+S Sbjct: 350 GFEVKDTGIGIPADSIGAIFDLFAQVDGSTTRKYGGTGLGLAIAKQLVELMGGEIGVESE 409 Query: 138 PGRGSTFRFEVALDKTL--SLKESSPGGEAVLPEPC---------FSGQPVLVAEDNGLN 186 PG+GSTF F V L + + +L E V + C F+ + VL+AEDN +N Sbjct: 410 PGQGSTFTFIVFLHQQVDQALCEEEGADMPVDKDNCTAEARQIGKFNAR-VLLAEDNPVN 468 Query: 187 STXXXXXXXXXGITDVQLVSSGKEVIEAWQQGEYGLILMDSRLPGMNGGEAVRRIRELES 246 G V + G+E +EA+ + Y LI MD ++P M+G +A R IR+ E Sbjct: 469 CEVAFAMIAALG-CQVDVAQDGREAVEAFSRQPYDLIFMDCQMPEMDGYQATRAIRQRE- 526 Query: 247 SGTRPRVPIIGVTGDGSEEGRAQFFQAGLDDWAVKPLNLERLRQLLDRWFSPGP 300 G+ +I +T R AG+DD+ KP NLE+L++L+ +W SP P Sbjct: 527 LGSGKHTTVIALTAHAMAGAREYCLTAGMDDYLSKPFNLEQLQELIAKWTSPSP 580 >Q6MHL3.1 Q6MHL3_BDEBA Sensor protein EC=2.7.13.3 Length = 838 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 10/347 (2%) Query: 36 GDSSKILQVLINLVGNGLKFTQNGEVEVTVSLVQEDAARQHLCFAVRDEGIGISLKDQAA 95 D+ ++ Q+L+NL+GN +KFT+ G V + VS + + L F V+D G G+ ++ + Sbjct: 466 ADAGRLRQILVNLMGNAVKFTEKGFVRLEVSSRGDKDGKTALLFEVKDTGQGLQEHEKRS 525 Query: 96 LFRPYSQISSESAMAVEGTGLGLSICKSLVELMGGTITVDSAPGRGSTFRFEVALDKTLS 155 LF+ Y Q +++ M GTGLGLSICK LV+LMGG I V+S PG GS F F V L++ Sbjct: 526 LFQKYFQ--AKAGMKFGGTGLGLSICKQLVDLMGGDIGVESVPGVGSNFWFMVNLEECAG 583 Query: 156 LKESSPGGEAVLPEPCFSGQPVLVAEDNGLNSTXXXXXXXXXGITDVQLVSSGKEVIEAW 215 E P V FSG VLVAED +N G+ V++ +G+ +E Sbjct: 584 --EVQPQSSEVRFARIFSGH-VLVAEDQIVNQRVAESYLTKLGL-KVEIAGNGQIALEKA 639 Query: 216 QQGEYGLILMDSRLPGMNGGEAVRRIRELESSGTRPRVPIIGVTGDGSEEGRAQFFQAGL 275 + Y LI MD ++P +NG EA +++R LE++ R + P++ +T +G+ R ++AG+ Sbjct: 640 RSKSYDLIFMDCQMPVLNGYEATKQLRLLENTLGR-KTPVVALTAEGTSGERKSCYEAGM 698 Query: 276 DDWAVKPLNLERLRQLLDRWFSPGPYIPVLDADTISGIREMDGEEAPQLLQALVEMFKDD 335 DD+ KPL L +L + L RW P LD + ++++ + L + L+E + Sbjct: 699 DDFLTKPLELHKLIETLHRWLKPSE--KNLDLKALESLKDLVSHDRS-LTEVLIEDLEQS 755 Query: 336 TPXXXXXXXXXXXXXXXPEMGAVAHGLKSGSLSIGAKYFAHLCAAVE 382 P ++ AH LKS + ++GAK + LC +E Sbjct: 756 GPVLLHEIREGIESRNLEKVSESAHALKSSAATLGAKQVSELCQKLE 802 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,266,604,528 Number of extensions: 92044114 Number of successful extensions: 334585 Number of sequences better than 1.0e-05: 16746 Number of HSP's gapped: 334444 Number of HSP's successfully gapped: 18177 Length of query: 415 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 277 Effective length of database: 1,760,596,133 Effective search space: 487685128841 Effective search space used: 487685128841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)