BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0020.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF81.1 B1DF81_9BACL S-layer domain protein 222 1e-56 C0ZDC0.1 C0ZDC0_BREBN Putative uncharacterized protein 208 3e-52 B1DDB7.1 B1DDB7_9BACL S-layer domain protein 134 5e-30 B1DKJ4.1 B1DKJ4_9BACL S-layer domain protein 128 4e-28 B3KIM9.1 B3KIM9_9BACI S-layer domain protein 103 1e-20 >B1DF81.1 B1DF81_9BACL S-layer domain protein Length = 222 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/191 (56%), Positives = 131/191 (68%) Query: 33 FQDLSGTPAKDKIAQLQQRGVIHGVSDTQFMPNAAVTAAQAIQMFVNAFDLNIDLLRFVK 92 F D++ PAKDKI LQ +G++ GV + ++ P+A +TAAQ IQ+ VNA DLNID LRF K Sbjct: 31 FSDIANVPAKDKITALQNKGLVQGVGEDRYFPDATLTAAQGIQLIVNALDLNIDTLRFFK 90 Query: 93 APQATDYFANAINDAWYXXXXXXXXXXXXGLSPDLNPAKNWTREEFTHQLMLTIEKHSNL 152 P ATDYF A ++AWY GL DL+P K WT+EEFTHQL+L IE+HSNL Sbjct: 91 EPHATDYFPKADDNAWYADALIIAANNNIGLPNDLDPNKTWTKEEFTHQLILAIEQHSNL 150 Query: 153 PLIKIMPVDIADSADFTNGYDGSIQRALVLHIASLDSDGKFHPAAGITRAEAAEMIYNAL 212 P+IKI PV D + + YDGSIQRALVL IA LD DG F+P ITRA+AA +IYNAL Sbjct: 151 PMIKIAPVAFNDQDEVSVSYDGSIQRALVLKIAELDQDGNFNPTDDITRADAAVLIYNAL 210 Query: 213 EYIAAHPAPAG 223 YI PAP+ Sbjct: 211 AYIGEAPAPSA 221 >C0ZDC0.1 C0ZDC0_BREBN Putative uncharacterized protein Length = 220 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 101/186 (54%), Positives = 123/186 (66%) Query: 33 FQDLSGTPAKDKIAQLQQRGVIHGVSDTQFMPNAAVTAAQAIQMFVNAFDLNIDLLRFVK 92 F D+ + AKDKI LQQ+GVI GV D++F PN +TAAQ IQ+ VNAFDL++ + FVK Sbjct: 31 FTDIGQSGAKDKILSLQQQGVIKGVDDSKFAPNETITAAQGIQLMVNAFDLSLAAVTFVK 90 Query: 93 APQATDYFANAINDAWYXXXXXXXXXXXXGLSPDLNPAKNWTREEFTHQLMLTIEKHSNL 152 APQATDYF+ A NDAWY L DL+P WTRE+F HQLM +E NL Sbjct: 91 APQATDYFSKADNDAWYAESLIIAAVNGLELPNDLDPNAEWTREQFIHQLMKVMETKGNL 150 Query: 153 PLIKIMPVDIADSADFTNGYDGSIQRALVLHIASLDSDGKFHPAAGITRAEAAEMIYNAL 212 P+IK++PV+I D D T Y GSIQRAL I LD + K HP +TR EAAEMIYNAL Sbjct: 151 PMIKLVPVEIKDDHDLTVDYQGSIQRALARDIIELDKENKLHPQKPVTREEAAEMIYNAL 210 Query: 213 EYIAAH 218 Y+ +H Sbjct: 211 AYLKSH 216 >B1DDB7.1 B1DDB7_9BACL S-layer domain protein Length = 237 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 1/186 (0%) Query: 33 FQDLSGTPAKDKIAQLQQRGVIHGVSDTQFMPNAAVTAAQAIQMFVNAFDLNIDLLRFVK 92 F D++GT ++ +I LQ+ G++ GVS ++F P +T AQ I++ V L++ + F + Sbjct: 31 FTDIAGTSSRAQIEALQELGIVKGVSSSEFHPEENLTGAQGIELIVRTMQLSLAAIDFNQ 90 Query: 93 APQATDYFANAINDAWYXXXXXXXXXXXXGLSPDLNPAKNWTREEFTHQLMLTIEKHSNL 152 P A +F N NDAWY L D++P K TRE+F H L+ +EK Sbjct: 91 TPTADGFFTNVKNDAWYAESFVIAHYNGLDLPADIDPNKPLTREQFAHYLVQALEKTGQY 150 Query: 153 PLIKIMPVDIADSADFTNGYDGSIQRALVLHIASLDSDGKFHPAAGITRAEAAEMIYNAL 212 PLIK M ++I D D T Y G+IQRAL+ I +LD DG FHP + RAEAA +++ A Sbjct: 151 PLIK-MYINIQDEKDITVDYQGTIQRALLYKIVALDEDGNFHPQQIVNRAEAAAILFAAH 209 Query: 213 EYIAAH 218 E++ H Sbjct: 210 EFVETH 215 >B1DKJ4.1 B1DKJ4_9BACL S-layer domain protein Length = 317 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 97/195 (49%), Gaps = 7/195 (3%) Query: 33 FQDLSGTPAKDKIAQLQQRGVIHGVSDTQFMPNAAVTAAQAIQMFVNAFDLNIDLLRFVK 92 F D S P K KI L+++GVI G +F N +T A I M V AFDLNID +RF+K Sbjct: 27 FSDTSKDPNKSKIESLEKQGVIKGEKGNKFNSNGKLTYAAGISMIVKAFDLNIDNIRFIK 86 Query: 93 APQATDYFANAINDAWYXXXXXXXXXXXXGLSPDLNPAKNWTREEFTHQLMLTIEKHSNL 152 P+ DY+ N N +WY + ++ TRE+F H L I K + Sbjct: 87 KPEVADYYPNLKNGSWYADAFIIAQYNGLEVPKNVKANDEMTREQFAHHLFKAITKKGDF 146 Query: 153 PLIKIMPVDIADSADFTNGYDGSIQRALVLHIASLDSDGKFHPAAGITRAEAAEMIYNAL 212 I++ + + D D Y SIQ+ L+ IA+LD F+P ITR AA +Y+ L Sbjct: 147 AFIELY-MTVNDEKDVNKDYMNSIQKLLISKIATLDKKNNFYPKQKITRGVAAGWLYDGL 205 Query: 213 EY------IAAHPAP 221 E+ I A PAP Sbjct: 206 EFVKKTPTIPAEPAP 220 >B3KIM9.1 B3KIM9_9BACI S-layer domain protein Length = 308 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 9/187 (4%) Query: 33 FQDLSGTPAKDKIAQLQQRGVIHGVSDTQFMPNAAVTAAQAIQMFVNAFDLNIDLLRFVK 92 F D+ + +LQ +G+I G+S +F P+ +T AQA+QM VNA L + Sbjct: 26 FTDIQEEKPLQMVKELQSKGIIQGISADKFAPSKTITTAQAVQMIVNAAGLEVQ------ 79 Query: 93 APQATDY-FANAINDAWYXXXXXXXXXXXXGLSPDLNPAKNWTREEFTHQLMLTIEKHSN 151 P T F + DAW+ +S D+ + TRE F L I+K N Sbjct: 80 -PNFTGRSFDSVPKDAWFAEAVNIAAQNGLSVSADMKWNEPITREGFATLLSEAIQKTGN 138 Query: 152 LPLIKIMPVDIADSADFTNGYDGSIQRALVLHIASLDSDGKFHPAAGITRAEAAEMIYNA 211 P+I +M + +AD G++Q L+ IA LD++ KFHP ++R EAAE++YN+ Sbjct: 139 YPVI-MMYLHVADEDLMKEESRGAVQFLLLTKIAKLDANDKFHPTKSLSRIEAAELVYNS 197 Query: 212 LEYIAAH 218 + +I H Sbjct: 198 IRFIEEH 204 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,112,820,001 Number of extensions: 38992931 Number of successful extensions: 87158 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 87163 Number of HSP's successfully gapped: 21 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)