BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0019.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3                      101   2e-20
B3E2W5.1 B3E2W5_GEOLS Sensor protein EC=2.7.13.3                      100   5e-20
B0C7P6.1 B0C7P6_ACAM1 Sensor protein EC=2.7.13.3                       97   5e-19
B4WMW6.1 B4WMW6_9SYNE Sensor protein EC=2.7.13.3                       97   5e-19
A3DDL2.1 A3DDL2_CLOTH Sensor protein EC=2.7.13.3                       96   8e-19

>B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3
          Length = 559

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 60/77 (77%)

Query: 2   LTLEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYA 61
           LTLEFTV+DTGIGI   K+  LF+PF+Q+ S++ R++GGTGLGL+ICK LV++MGGEI  
Sbjct: 319 LTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEV 378

Query: 62  KPDAGQGAVFVFTIQVS 78
               G+GA FVFTI V 
Sbjct: 379 DSKEGEGATFVFTICVH 395


>B3E2W5.1 B3E2W5_GEOLS Sensor protein EC=2.7.13.3
          Length = 1287

 Score =  100 bits (248), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 58/77 (75%)

Query: 2   LTLEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYA 61
           +TLEF+V DTGIG+  DK++ LFQPFTQ   +I RKFGGTGLGLSI K +VEL GG I+A
Sbjct: 815 VTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGLGLSISKRIVELTGGHIWA 874

Query: 62  KPDAGQGAVFVFTIQVS 78
           + + G G+VF F +  S
Sbjct: 875 ESEPGYGSVFSFNMPFS 891


>B0C7P6.1 B0C7P6_ACAM1 Sensor protein EC=2.7.13.3
          Length = 755

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 56/78 (71%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           L F V DTG+GIP ++ + LF+ F+Q+ S+  RKFGGTGLGL ICK L ELMGG I+ + 
Sbjct: 390 LSFAVRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVES 449

Query: 64  DAGQGAVFVFTIQVSEGQ 81
           + GQG+ F FTIQ  E +
Sbjct: 450 EEGQGSTFAFTIQAEETE 467


>B4WMW6.1 B4WMW6_9SYNE Sensor protein EC=2.7.13.3
          Length = 774

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 59/74 (79%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           L+F V+DTGIGIP+ K+  LF+PF+Q+ S++ RK GGTGLGLSICK LVELMGG+++ + 
Sbjct: 398 LQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSICKRLVELMGGQMWVES 457

Query: 64  DAGQGAVFVFTIQV 77
           + G  + F F+IQ+
Sbjct: 458 ELGCSSTFHFSIQL 471


>A3DDL2.1 A3DDL2_CLOTH Sensor protein EC=2.7.13.3
          Length = 902

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query: 2   LTLEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYA 61
           + L+FTV DTGIGI  DKM+ LF+ F+Q+ S+I RK+GGTGLGL+I K LVE+MGGEI+ 
Sbjct: 565 VKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQLVEMMGGEIWV 624

Query: 62  KPDAGQGAVFVFT 74
           +   G+G+ F FT
Sbjct: 625 ESQKGKGSTFYFT 637


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 505,558,205
Number of extensions: 18542265
Number of successful extensions: 85795
Number of sequences better than 1.0e-05: 8823
Number of HSP's gapped: 92885
Number of HSP's successfully gapped: 8836
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)