BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0018.p
         (184 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z9F8.1 C0Z9F8_BREBN Putative uncharacterized protein                 72   2e-11
C2VMB6.1 C2VMB6_BACCE Putative uncharacterized protein                 62   3e-08
C2V485.1 C2V485_BACCE Putative uncharacterized protein                 61   4e-08
C2X029.1 C2X029_BACCE Putative uncharacterized protein                 60   1e-07
C3A5X4.1 C3A5X4_BACMY Putative uncharacterized protein                 58   5e-07

>C0Z9F8.1 C0Z9F8_BREBN Putative uncharacterized protein
          Length = 204

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 7/169 (4%)

Query: 7   KRQDRIIVIIQKGSRKIITRTPLAGVDRLVFVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 66
           +R+D++ VI QKG ++++ +T L    R+V V                            
Sbjct: 3   RRKDKLTVIYQKGKKRMVVKTFLRETSRVVVVLNTQFTNAPNTTQIASGAGRSGAAGNDA 62

Query: 67  XXXXPFTRQQQSVGAGGDATNLGSRGQRGSKPHFPLPSLHGK----EVVVVINNQTVKLP 122
                 T QQQSVGAGG A N   RG  G +  +       K    E +VVIN+Q VKL 
Sbjct: 63  AIDSSNTLQQQSVGAGGIARN---RGMAGKQSEYHGHHKGKKKNGKEAIVVINDQVVKLA 119

Query: 123 KGSKTSSATQVXXXXXXXXXXXXXXXIDSPATRQQQAVGGGTGGHALNK 171
           +  + +SATQV               I+S  T+QQ AVGGG G  A N+
Sbjct: 120 RRLRNASATQVAGGGGTYSTGGTNAAIESSNTKQQHAVGGGPGSRASNR 168


>C2VMB6.1 C2VMB6_BACCE Putative uncharacterized protein
          Length = 176

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 73  TRQQQSVGAGGDATNLGSRGQRGSKPH--FPLPSLHGKEVVVVINNQTVKLPKGSKTSSA 130
           TRQQQ+VGAGG+A N G  G +  +PH      S   +E V+VINNQ  K  K  + +SA
Sbjct: 68  TRQQQTVGAGGEAINKGISGDQ-IEPHKMKKETSNEEEEFVIVINNQINKTRK--EQASA 124

Query: 131 TQVXXXXXXXXXXXXXXXIDSPATRQQQAVGGGTGGHALN 170
           TQV               I+S  T+QQ AVGGGT   A+N
Sbjct: 125 TQVASGGGDDSAAGTNAAIESSNTKQQHAVGGGTDSSAVN 164


>C2V485.1 C2V485_BACCE Putative uncharacterized protein
          Length = 176

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 73  TRQQQSVGAGGDATNLGSRGQRGSKPH-FPLPSLH-GKEVVVVINNQTVKLPKGSKTSSA 130
           TRQQQ+VGAGG+A N G  G +  +PH     +L+  +E V+VINNQ  K  K  + +SA
Sbjct: 68  TRQQQTVGAGGEAINKGISGDQ-IEPHKMKKETLNEEEEFVIVINNQINKTRK--EQASA 124

Query: 131 TQVXXXXXXXXXXXXXXXIDSPATRQQQAVGGGTGGHALN 170
           TQV               I+S  T+QQ AVGGGT   A+N
Sbjct: 125 TQVASGGGDDSAAGTNAAIESSNTKQQHAVGGGTDSSAVN 164


>C2X029.1 C2X029_BACCE Putative uncharacterized protein
          Length = 176

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 73  TRQQQSVGAGGDATNLGSRGQRGSKPH-FPLPSLH-GKEVVVVINNQTVKLPKGSKTSSA 130
           TRQQQ+VGAGG+A N G  G +  +PH     +L+  +E V+ INNQ  K  K  + +SA
Sbjct: 68  TRQQQTVGAGGEAINKGISGDQ-IEPHKMKKETLNEEEEFVIAINNQINKTRK--EQASA 124

Query: 131 TQVXXXXXXXXXXXXXXXIDSPATRQQQAVGGGTGGHALN 170
           TQV               I+S  T+QQ AVGGGT   A+N
Sbjct: 125 TQVASGGGDDSAAGTNAAIESSNTKQQHAVGGGTDSSAVN 164


>C3A5X4.1 C3A5X4_BACMY Putative uncharacterized protein
          Length = 176

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 73  TRQQQSVGAGGDATNLGSRGQRGSKPH--FPLPSLHGKEVVVVINNQTVKLPKGSKTSSA 130
           TRQQ++VGAGG+A N G  G +  +PH      S    E V++INNQ  K  K  + +SA
Sbjct: 68  TRQQETVGAGGEAINKGISGDQ-IEPHKMKKETSDEEAEFVLIINNQINKTRK--EQASA 124

Query: 131 TQVXXXXXXXXXXXXXXXIDSPATRQQQAVGGGTGGHALN 170
           TQV               I+S  T+QQ AVGGGT   A N
Sbjct: 125 TQVASGGGEDSAAGTNAAIESSNTKQQHAVGGGTDSSAEN 164


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 745,389,587
Number of extensions: 19970243
Number of successful extensions: 40375
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 40369
Number of HSP's successfully gapped: 11
Length of query: 184
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 57
Effective length of database: 1,864,227,298
Effective search space: 106260955986
Effective search space used: 106260955986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 127 (53.5 bits)