BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0015.p (1026 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q250P3.1 Q250P3_DESHY Sensor protein EC=2.7.13.3 559 e-157 B8G1V5.1 B8G1V5_DESHD Sensor protein EC=2.7.13.3 559 e-157 B8FP92.1 B8FP92_DESHD Sensor protein EC=2.7.13.3 510 e-142 C0Z9Z8.1 C0Z9Z8_BREBN Two-component hybrid sensor and regulator ... 509 e-142 Q62YG5.1 Q62YG5_BACLD Sensor protein EC=2.7.13.3 496 e-138 >Q250P3.1 Q250P3_DESHY Sensor protein EC=2.7.13.3 Length = 1018 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 335/991 (33%), Positives = 533/991 (53%), Gaps = 13/991 (1%) Query: 34 PVLRHGLMDLRDWDFGSDGLVRLDGEWEFYRNMLLDPEDFQPGDGPPPAASTMINVPDKW 93 P G +DLRD++ D V+L GEWEFY LL PEDF+ + P+ T+ NVP W Sbjct: 35 PKAVKGTLDLRDYNGVRDKTVKLSGEWEFYFGQLLTPEDFKNQE---PSGKTIQNVPASW 91 Query: 94 NGYISASGKRTAKGYATYRMQALITPGETAVYGLRTSNIRTASKVFMNGQEIGNSGIPSS 153 Y +G ATYR++ L+ P E +G++ + I ++++F + Q I G P + Sbjct: 92 GSYQIEGEHLPPQGSATYRLRILL-PAEGGNFGIKITCISASARIFADDQLILECGSPGN 150 Query: 154 SVSAGKQNNIPYMGFASVAGDRLEIIVQVSNYSYSSGGIVQPVIIGDQTAILKHREFALI 213 S G+ +EI+VQ +++SY + GI+ + GDQ +I R + Sbjct: 151 SPETTVHKYYADTGYFQTDDGEVEILVQAADFSYVNSGILYEIHFGDQKSIAALRMYDSF 210 Query: 214 ADGAAMCGXXXXXXXXXXXXRVREGRGITLHLGLFCMSAFVYILTHGEKLIASGLPGLPY 273 D + + G R+ L L+C+ + + E L+ LP L Y Sbjct: 211 LDISLISGMSFLALYFFGLGLQRKKSAEILFFALYCLVSSLQASVRSEALLNYALPALSY 270 Query: 274 EIVLKLQLISSTLVYYYLLRYVANSINYPMPQAVMKASKFITSLLLVIAVCVPAYYFSFL 333 LK+ +IS TL Y L++++ ++ + IT +++ Y + ++ Sbjct: 271 NTSLKILIISYTLCLYALIKFLYHAQEGGSSRRANLIIDGITLFFILLDWFTDFYLWGYI 330 Query: 334 ETLLLTWGSVSLSFVLYVMVKGTKQQPKNMFLMMVSIESLSVVILYYLISISRVHLSYNV 393 T+ L L ++ ++ K TK + + + ++ S + +L L + + S Sbjct: 331 YTVALVGQIYVLFLLIALLAKNTKGGSEGRYYLFSAVVSSLIHLLTILANFILLWESNLF 390 Query: 394 VSYEIVLFGFVQAIVMTRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIV 453 + +F A+ M+ KY++SF +E+LS RLV LD LKDDF+A TS+EL+ PL GI+ Sbjct: 391 LPVFQPIFVLSLALYMSEKYENSFKTIEKLSDRLVVLDKLKDDFLAKTSHELKTPLNGII 450 Query: 454 NMAQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLR 513 N++Q+L +GA GSLS Q + +I S GKRL +L+ D+ D++KL D+ L +D+ Sbjct: 451 NISQSLLDGAGGSLSRAQAEDIRLITSIGKRLSTLVYDILDYSKLKVMDIQLHIVCLDVH 510 Query: 514 MVASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVIT 573 VA S +++ ++ QI NLL N++ +T G I+ Sbjct: 511 QVAESTVDIFRYLIKGRPITLENKIPPNQHLIWADENRLKQIFSNLLDNSLKYTELGSIS 570 Query: 574 LSAKVIEEYVAVIVADTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKLVEL 633 LS + ++ + V+DTG GI ++L IF +GLGL+ITQ+L+EL Sbjct: 571 LSCRQDGGFLWIQVSDTGIGIPADKLKDIFAPYEQLGEQSAN-QRGIGLGLTITQQLIEL 629 Query: 634 NGGRIEVQSTPGEGSEFTFTLPILKEKTAFTDQEVL--EPTGWETAAAMXXXXXXXXXXX 691 +GG+I +S PG+G+ FTF++P+ K+ Q L + G++ + ++ Sbjct: 630 HGGQIVARSEPGQGTSFTFSIPLAKDNKP---QRSLPGDYVGYDGSESLATEALPQTVHV 686 Query: 692 XXXXCCFILIVDNDPVNRQVLANALRLENHTVITAESGPEALLQMRDFPELDLIITDWVM 751 IL+VD++ N + L N L L + V A +G AL ++ DL I D +M Sbjct: 687 GGEFS--ILVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMM 744 Query: 752 PGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLREFKARV 811 PG+SG+ +C+ IRE + ELPIL+LTA PED++A F AGAND++ P ++RE K RV Sbjct: 745 PGISGYEVCRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRV 804 Query: 812 RTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLR 871 TL+ ++ S+ ++ E AFLQAQI+PHFL+NALN I S C +P A ELL +L +LR Sbjct: 805 STLVQLKNSMDLLLKKETAFLQAQIRPHFLFNALNTIYSFCYTNPGKAGELLAELGVFLR 864 Query: 872 SSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMAL-VPPLSIQPIV 930 SSFDF + V +EKEL LV++Y+A+E+ARF +L + + + + + PL IQPIV Sbjct: 865 SSFDFSSTASLVTVEKELRLVKAYVAIEEARFGSQLEVEYAVEPSVLNFSILPLMIQPIV 924 Query: 931 ENAVNHGLMQKESGGTVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDERTEGGIGLR 990 EN++ HGL+++ GG V+LS+ + V V D+G+G+ + D++ + G+GL Sbjct: 925 ENSIRHGLLKRSQGGKVSLSLTHSEDCIQVEVIDNGVGIPASVLKDLIHAKSETRGVGLT 984 Query: 991 NIQRRLLKMYGAGLSVISMPDQGTTISYTIP 1021 NI RRLL+ YG L++ S+ D GTT+S+ IP Sbjct: 985 NISRRLLRFYGTTLTIFSVEDHGTTVSFRIP 1015 >B8G1V5.1 B8G1V5_DESHD Sensor protein EC=2.7.13.3 Length = 1018 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 335/991 (33%), Positives = 533/991 (53%), Gaps = 13/991 (1%) Query: 34 PVLRHGLMDLRDWDFGSDGLVRLDGEWEFYRNMLLDPEDFQPGDGPPPAASTMINVPDKW 93 P G +DLRD++ D V+L GEWEFY LL PEDF+ + P+ T+ NVP W Sbjct: 35 PKAVKGTLDLRDYNGVRDKTVKLSGEWEFYFGQLLTPEDFKNQE---PSGKTIQNVPASW 91 Query: 94 NGYISASGKRTAKGYATYRMQALITPGETAVYGLRTSNIRTASKVFMNGQEIGNSGIPSS 153 Y +G ATYR++ L+ P E +G++ + I ++++F + Q I G P + Sbjct: 92 GSYQIEGEHLPPQGSATYRLRILL-PAEGGNFGIKITCISASARIFADDQLILECGSPGN 150 Query: 154 SVSAGKQNNIPYMGFASVAGDRLEIIVQVSNYSYSSGGIVQPVIIGDQTAILKHREFALI 213 S G+ +EI+VQ +++SY + GI+ + GDQ +I R + Sbjct: 151 SPETTVHKYYADTGYFQTDDGEVEILVQAADFSYVNSGILYEIHFGDQKSIAALRMYDSF 210 Query: 214 ADGAAMCGXXXXXXXXXXXXRVREGRGITLHLGLFCMSAFVYILTHGEKLIASGLPGLPY 273 D + + G R+ L L+C+ + + E L+ LP L Y Sbjct: 211 LDISLISGMSFLALYFFGLGLQRKKSAEILFFALYCLVSSLQASVRSEALLNYALPALSY 270 Query: 274 EIVLKLQLISSTLVYYYLLRYVANSINYPMPQAVMKASKFITSLLLVIAVCVPAYYFSFL 333 LK+ +IS TL Y L++++ ++ + IT +++ Y + ++ Sbjct: 271 NTSLKILIISYTLCLYALIKFLYHAQEGGSSRRANLIIDGITLFFILLDWFTDFYLWGYI 330 Query: 334 ETLLLTWGSVSLSFVLYVMVKGTKQQPKNMFLMMVSIESLSVVILYYLISISRVHLSYNV 393 T+ L L ++ ++ K TK + + + ++ S + +L L + + S Sbjct: 331 YTVALVGQIYVLFLLIALLAKNTKGGSEGRYYLFSAVVSSLIHLLTILANFILLWESNLF 390 Query: 394 VSYEIVLFGFVQAIVMTRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIV 453 + +F A+ M+ KY++SF +E+LS RLV LD LKDDF+A TS+EL+ PL GI+ Sbjct: 391 LPVFQPIFVLSLALYMSEKYENSFKTIEKLSDRLVVLDKLKDDFLAKTSHELKTPLNGII 450 Query: 454 NMAQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLR 513 N++Q+L +GA GSLS Q + +I S GKRL +L+ D+ D++KL D+ L +D+ Sbjct: 451 NISQSLLDGAGGSLSRAQAEDIRLITSIGKRLSTLVYDILDYSKLKVMDIQLHIVCLDVH 510 Query: 514 MVASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVIT 573 VA S +++ ++ QI NLL N++ +T G I+ Sbjct: 511 QVAESTVDIFRYLIKGRPITLENKIPPNQHLIWADENRLKQIFSNLLDNSLKYTELGSIS 570 Query: 574 LSAKVIEEYVAVIVADTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKLVEL 633 LS + ++ + V+DTG GI ++L IF +GLGL+ITQ+L+EL Sbjct: 571 LSCRQDGGFLWIQVSDTGIGIPADKLKDIFAPYEQLGEQSAN-QRGIGLGLTITQQLIEL 629 Query: 634 NGGRIEVQSTPGEGSEFTFTLPILKEKTAFTDQEVL--EPTGWETAAAMXXXXXXXXXXX 691 +GG+I +S PG+G+ FTF++P+ K+ Q L + G++ + ++ Sbjct: 630 HGGQIVARSEPGQGTSFTFSIPLAKDNKP---QRSLPGDYVGYDGSESLATEALPQTVHV 686 Query: 692 XXXXCCFILIVDNDPVNRQVLANALRLENHTVITAESGPEALLQMRDFPELDLIITDWVM 751 IL+VD++ N + L N L L + V A +G AL ++ DL I D +M Sbjct: 687 GGEFS--ILVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMM 744 Query: 752 PGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLREFKARV 811 PG+SG+ +C+ IRE + ELPIL+LTA PED++A F AGAND++ P ++RE K RV Sbjct: 745 PGISGYEVCRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRV 804 Query: 812 RTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLR 871 TL+ ++ S+ ++ E AFLQAQI+PHFL+NALN I S C +P A ELL +L +LR Sbjct: 805 STLVQLKNSMDLLLKKETAFLQAQIRPHFLFNALNTIYSFCYTNPGKAGELLAELGVFLR 864 Query: 872 SSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMAL-VPPLSIQPIV 930 SSFDF + V +EKEL LV++Y+A+E+ARF +L + + + + + PL IQPIV Sbjct: 865 SSFDFSSTASLVTVEKELRLVKAYVAIEEARFGSQLEVEYAVEPSVLNFSILPLMIQPIV 924 Query: 931 ENAVNHGLMQKESGGTVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDERTEGGIGLR 990 EN++ HGL+++ GG V+LS+ + V V D+G+G+ + D++ + G+GL Sbjct: 925 ENSIRHGLLKRSQGGKVSLSLTHSEDCIQVEVIDNGVGIPASVLKDLIHAKSETRGVGLT 984 Query: 991 NIQRRLLKMYGAGLSVISMPDQGTTISYTIP 1021 NI RRLL+ YG L++ S+ D GTT+S+ IP Sbjct: 985 NISRRLLRFYGTTLTIFSVEDHGTTVSFRIP 1015 >B8FP92.1 B8FP92_DESHD Sensor protein EC=2.7.13.3 Length = 1016 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 325/996 (32%), Positives = 524/996 (52%), Gaps = 30/996 (3%) Query: 37 RHGLMDLRDWDFGSDGLVRLDGEWEFYRNMLLDPEDFQPGDGPPPAASTMINVPDKWNGY 96 + G++DLRDWD SD +V LDG+WEFY + LL+P G P +A+ +I VP W Sbjct: 37 QQGVLDLRDWDAASDQVVPLDGQWEFYWHQLLEP------GGEPDSAANVIQVPGFWRND 90 Query: 97 ISASGKRTAKGYATYRMQALITPGETAVYGLRTSNIRTASKVFMNGQEIGNSGIPSSSVS 156 + A+ A+G ATYR+ + P +T VYGLR SNIR AS +++NG + G SG P+ + Sbjct: 91 M-ATRIDHARGAATYRLTIKLKPSDT-VYGLRISNIRMASAIYVNGNQAGGSGKPALTQD 148 Query: 157 AGKQNNIPYMGFASVAGDRLEIIVQVSNYSYSSGGIVQPVIIGDQTAILKHREFALIADG 216 + N PY F V GD EI++ V+NY + GGI + G I + + Sbjct: 149 EYQYENKPYNVFFPVQGDTAEILIHVANYENNQGGIPYRLYFGSAQGIHTLNTNTTLLNV 208 Query: 217 AAMCGXXXXXXXXXXXXRVREGRGITLHLGLFCMSAFVYILTHGEKLIASGLPGLPYEIV 276 + + +R L+ GL C+ + G++L+ LP EI Sbjct: 209 SLIVSLLMLGCYQLSVFIIRREEKGPLYFGLSCVVIAWSYASTGDRLLIEYF-NLPTEIY 267 Query: 277 LKLQLISSTLVYYYLLRYVANSINYPMPQAVMKASKFITSLLLVIAVCVPAYYFSFLETL 336 K+Q IS + ++ +P+ + K + L + + P ++S L Sbjct: 268 YKIQAISLYSSLIPMAMFIKTMCKGLIPRWLTKGIIYGMGLYSGVVLVTPFQWYSPFNLL 327 Query: 337 L----LTWGSVSLSFVLYVMVKGTKQQ--PKNMFLMMVSIESLSVVILYYLISISRVHLS 390 + + + +LY +G + K++ L ++++ + ++ Y + +S V L Sbjct: 328 FSFIQMAANIIIVGLLLYSFRQGRYGEFNRKSLGLFILALGCYLLGLIDYGLYLSSVVLD 387 Query: 391 YNVVSYEIVLFGFVQAIVMTRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQ 450 Y + Y I+ F F+ + +M+ ++ ++ +E ++ L D KD+F+ TS+E + PL Sbjct: 388 YKLGYYAILSFCFLASFIMSYQFSEAYKTIESMAAELQQADKQKDEFLLHTSHEFQTPLH 447 Query: 451 GIVNMAQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAV 510 GI+N++Q + E G LS L++I T ++L +L+ D+ D K+ +L + V Sbjct: 448 GIINLSQAMLE-TEGELSENHLQNLAVIRDTSRKLSALVRDILDLDKIKRNELTVHPAEV 506 Query: 511 DLRMVASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKG 570 D+R+ S V ++ H+ QI+ NL+ NA+ T G Sbjct: 507 DVRVTVSLVFDLLKHLITAKKIRLINRVPEDLPFVYADENRLRQIIHNLVGNAMKFTSAG 566 Query: 571 VITLSAKVIEEYVAVIVADTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKL 630 I +SA+V+E +V ++V DTG GIAP T+F + Y GLGL I +KL Sbjct: 567 TIAISAQVLENHVKIMVEDTGVGIAPSDWDTVFQLFEQAHSPNE--YGGTGLGLFICRKL 624 Query: 631 VELNGGRIEVQ-STPGEGSEFTFTLPILKEKTAFTDQEVLEPTGWETAAAMXXXXXXXXX 689 V++ G I + S P G+ FTLP+ + + V P + M Sbjct: 625 VQMMDGEIYIDWSEPERGTRIAFTLPLAAKDSCSAPASVRPPEKY----PMDEPWGRTEL 680 Query: 690 XXXXXXCCFILIVDNDPVNRQVLANALRLENHTVITAESGPEALLQMRDFPELDLIITDW 749 +L VD+D N QVLA E + V+ A +G EAL ++ ++DL++ D Sbjct: 681 PQGGTGKFTLLAVDDDSANLQVLARLFANEPYNVLWATNGLEALELLKSRSDIDLVLLDV 740 Query: 750 VMPGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLREFKA 809 +MP MSG+ +C+ IR +F L ELP+++LT + P DI A F+AGAND++ P D E +A Sbjct: 741 MMPRMSGYEVCREIRRQFSLFELPVILLTVRHSPGDIAAGFKAGANDFMIKPFDALEVRA 800 Query: 810 RVRTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQY 869 R TLL +++S+ +++ E+ FLQ+QIKPHFL+NALNAII++C D A +L+ LS Y Sbjct: 801 RTETLLQLKQSVAAALKAEMDFLQSQIKPHFLFNALNAIITLCGTDGLRAEQLITHLSYY 860 Query: 870 LRSSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDL-PQDTMALVPPLSIQP 928 LR F+ + + ++ EL LV +Y+ +EKARF+DRL +++++ P + + PL+IQP Sbjct: 861 LRRCFEPRT-DSFLLLQDELRLVEAYVEIEKARFEDRLTVLYEVDPGALLKRILPLTIQP 919 Query: 929 IVENAVNHGLMQKESGGTVTLSIRQLPGHLV-VAVTDDGIGMTQERIADI-LSDERT--E 984 +VENA+ HG+M++E GGT+ L+I QL G V V V D+G+G+ +E++ ++ LSD + Sbjct: 920 LVENAIRHGVMKREEGGTIRLTI-QLAGDRVHVEVWDNGVGIREEQLKNLWLSDNSSSER 978 Query: 985 GGIGLRNIQRRLLKMYGAGLSVISMPDQGTTISYTI 1020 G+GL NIQRRL G L V S + T + + Sbjct: 979 RGVGLANIQRRLKHFCGEELHVTSREGEWTKVQFCF 1014 >C0Z9Z8.1 C0Z9Z8_BREBN Two-component hybrid sensor and regulator EC=2.7.3.- Length = 1024 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 321/1010 (31%), Positives = 531/1010 (52%), Gaps = 35/1010 (3%) Query: 29 DAQNKPVLRHGLMDLRDWDFGSDGLVRLDGEWEFYRNMLLDPEDFQPGDG-PPPAASTMI 87 D KPV G++DLR W+F +RLDGEWEF+ P F G+G P T + Sbjct: 34 DYAEKPVAVQGVLDLRGWEFSEYQTLRLDGEWEFF------PSQFIEGNGLKKPEGQTYL 87 Query: 88 NVPDKWN-GYISASGKRTAKGYATYRMQALITPGETAVYGLRTSNIRTASKVFMNGQEIG 146 VP+KW+ ++ G + + TYR++ L+ P + G R + +RTAS V+ NG+ + Sbjct: 88 QVPNKWDEAFVHEQGLSDSFHFGTYRLRILLDPEQEQTLGFRINELRTASTVYANGKLVA 147 Query: 147 NSGIPSSSVSAGKQNNIPYMGFASVAGDRLEIIVQVSNYSYSSGGIVQPVIIGDQTAI-L 205 +G P++S + NIPY + ++E+++ VSN + +GGI +P+ G A+ + Sbjct: 148 QAGQPATSNIEHQARNIPYTVKLTPQQGQVELLIHVSNDA-GAGGITKPIRFGTIEAVQM 206 Query: 206 KHREFALIADGAAMCGXXXXXXXXXXXXRVREGRGITLHLGLFCMSAFVYILTHGEKLIA 265 + + + +G+ ++ L + ++T +KL+ Sbjct: 207 RTILSISLQLLLLVVFLIHSLYALLLYFLGARNKGL-VYFSLVMVCGIFTVVTADDKLLF 265 Query: 266 SGLPGLPYEIVLKLQLISSTLVYYYLLRYVANSINYPMP----QAVMKASKFITSLLLVI 321 L Y+ +KL + LVY + ++ ++ +P + +++ + SL + Sbjct: 266 VWLQ-FDYDWTVKL----TYLVYVGAVAFIPPLFHHLLPAYLNRRILQGFSGLCSLYAIF 320 Query: 322 AVCVPAYYFSFLETLLLTWGSVSLSFVLYVMVKGTKQQPKNMFLMMVSI---ESLSVVIL 378 + VPA + +L +S+ Y++ K + + +FL++ + ++ I Sbjct: 321 ILLVPAGTILAMIRMLSIVLLLSVIISAYILWKAIRDKEDIIFLLLACLFVGVNVIWTIA 380 Query: 379 YYLISISRVHLSYNVVSYEIVLFGFVQAIVMTRKYKSSFLEVEQLSRRLVTLDGLKDDFM 438 Y ++ +H +N++ + ++ F A R++ + E + L+ +L D KD+F+ Sbjct: 381 YSILGWEFIHYPFNLI-FAVLAF----AAYWFRRFFRATTETKHLAEKLQQEDKRKDEFL 435 Query: 439 ADTSYELRKPLQGIVNMAQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMADFAKL 498 +TS+ELR PL GI+N+ Q + E + L + K +L +++ +RL +++D+ D +L Sbjct: 436 VNTSHELRNPLHGIINITQAIIEDTNNPLHEEHKKRLDILLHVSRRLTLMLDDLLDVTRL 495 Query: 499 NHGDLFLKRQAVDLRMVASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQILFN 558 + L + ++L+ + + V ++ + QILFN Sbjct: 496 KENSIRLHEKKLNLQSIFAGVFDMAKLMLDGKPIALQVEIDDSFPAVRGDENRLIQILFN 555 Query: 559 LLANAVNHTHKGVITLSAKVIEEYVAVIVADTGQGIAPERLGTIFXXXXXXXXXXKKIYH 618 L+ NA+ T +G IT+ A + + V DTG G+ + L TIF + Sbjct: 556 LVHNAIKFTDEGTITIRATTSNGFAQIQVEDTGVGVEEKALQTIFQPYEQAELNAIRASG 615 Query: 619 ELGLGLSITQKLVELNGGRIEVQSTPGEGSEFTFTLPILKEKTAFTDQ--EVLEPTGWET 676 GLGL I+++LVEL+GG + VQST G+GS FTFTLP+ + + + T E Sbjct: 616 GFGLGLHISKQLVELHGGTLSVQSTLGKGSAFTFTLPLASDSVLIEENSAQTWMQTSLEM 675 Query: 677 AAAMX-XXXXXXXXXXXXXXCCFILIVDNDPVNRQVLANALRLENHTVITAESGPEALLQ 735 AAA I++VD+D +N +L+ L + + V TA S +AL Sbjct: 676 AAATTDRIITSTETVSSMNRRARIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSI 735 Query: 736 MRDFPELDLIITDWVMPGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGAN 795 + P +DL+I+D +MP +SG+ L + IRERF + ELP+L+LTA +R EDI A F+AGAN Sbjct: 736 LERNP-VDLVISDVMMPHVSGYELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAGAN 794 Query: 796 DYLSTPVDLREFKARVRTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDD 855 DY+ PVD E KARV+ L + + S ++ E A+LQ+QI+PHFL+NALN+I ++ D Sbjct: 795 DYVKKPVDAWELKARVKALTEFKISFDERLRMEGAWLQSQIEPHFLFNALNSIAALGLQD 854 Query: 856 PDMATELLLDLSQYLRSSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQ 915 LL + S YLR SFDF N + + EL+LVRSYL +EK RF DRL + +DL Sbjct: 855 FTKMQTLLEEFSNYLRLSFDFHNSEPVISLHDELDLVRSYLYIEKQRFGDRLQVEWDLDP 914 Query: 916 DTMALVPPLSIQPIVENAVNHGLMQKESGGTVTLSIRQLPGHLVVAVTDDGIGMTQERIA 975 D +PPLSIQP+VENA+ HGLMQ+ SGGTV + I+ + +++ DDG G+ +E + Sbjct: 915 DLDFCLPPLSIQPLVENAIKHGLMQRTSGGTVWIHIKDNEEYFEISIQDDGEGIAEEDLN 974 Query: 976 DILSDER---TEGGIGLRNIQRRLLKMYGAGLSVISMPDQGTTISYTIPR 1022 + S R +GLRNI+RRL ++Y GL++ S P+QGT +++ IP+ Sbjct: 975 QLFSQTRHGKKRASVGLRNIERRLRQLYNQGLTINSSPEQGTIVTFGIPK 1024 >Q62YG5.1 Q62YG5_BACLD Sensor protein EC=2.7.13.3 Length = 1030 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 325/997 (32%), Positives = 512/997 (51%), Gaps = 22/997 (2%) Query: 31 QNKPVLRHGLMDLRDWDFGSDGLVRLDGEWEFYRNMLLDPEDFQPGDGPPPAASTMINVP 90 QN P + G+++L WDF DG + L GEW YRN LL P+D G G P S +VP Sbjct: 31 QNYPEAKQGIINLETWDFQKDGNIALTGEWALYRNQLLSPKDIHAGKGKAPIYS---DVP 87 Query: 91 DKWNGYISASGKRTAKGYATYRMQALITPGETAVYGLRTSNIRTASKVFMNGQEIGNSGI 150 + N ++ SGK Y TYR+ + + + ++G+ TS I +A++V+ NG+ IG SG Sbjct: 88 N--NVKLTDSGKNV--DYGTYRLM-IRSKQDNEMFGISTSFINSANRVYFNGKLIGQSGT 142 Query: 151 PSSSVSAGKQNNIPYMGFASVAGDRLEIIVQVSNYSYS-SGGIVQPVIIGDQTAILKHRE 209 PS+ + QN PY F V E+IVQ SN+ + S GI +P+ G Q IL + Sbjct: 143 PSNKANFTAQNR-PYTSFFEVRRGDNELIVQFSNFKKTPSWGIEKPIAFGMQQHILHQSK 201 Query: 210 FALIADGAAMCGXXXXXXXXXXXXRVREGRGITLHLGLFCMSAFVYILTHG-EKLIASGL 268 + + + + + R C+ V +L G E++I Sbjct: 202 ISFLNETSMITAFFITGLYFLGFFLHRRKDKHLFFFSTMCLLFSVIVLLIGRERMIFLLF 261 Query: 269 PGLPYEIVLKLQLISSTLVYYYLLRYVANSINYPMPQAVMKASKFITSLLLVIAVCVPAY 328 P + + + ++ + LV + Y+ + + + + A+ + L+L+I Y Sbjct: 262 PSISFSALSVVRATTMVLVSMAVFLYLYFAYKEIVSKKWIIAATAFSVLVLMIDFITWGY 321 Query: 329 YFSFLETLLLTWGSVSLSFVLYVM-VKGTKQQPKNMFLMMVSIESLSVVILYYLISIS-R 386 L +L ++ YV + ++ +++L + +I + VIL + + S + Sbjct: 322 TDRLAYILHSVLAVTTLIYITYVFAISAVRKMKGSLYLTIAAISMSAFVILTTVSAYSGK 381 Query: 387 VHLSYNVVSYEIVLFGFVQAIVM-TRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYEL 445 S+N + + + A++M +++ +F E E LS +L+ ++ LKD+F+A TS+E Sbjct: 382 RGFSFNSLYAVPSIIALLAAVLMMAQQFAGAFRENEILSLKLLRMNRLKDEFIAKTSHEF 441 Query: 446 RKPLQGIVNMAQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFL 505 + PL ++N+ QTL ++K L +++ G RL SL+ND+ D K+ G L + Sbjct: 442 KTPLNSMINICQTLLARKRKRTLEEEKENLQLVIRMGYRLSSLVNDILDLEKMKQGMLQI 501 Query: 506 KRQAVDLRMVASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVN 565 + VD S+ M+ +S QI+ NL+ NA+ Sbjct: 502 QAVPVDAHSAISTEMDFYRLLSKNKNVRIVNRVPSGLPLVLADENRFRQIMTNLVDNAIK 561 Query: 566 HTHKGVITLSAKVI-EEYVAVIVADTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGL 624 +T +G ITLSA+ + +E V + VADTG GI IF GLGL Sbjct: 562 YTPEGQITLSAERLDQEKVKITVADTGVGIPKAVRQLIFEAFQQAKNHKDD---GAGLGL 618 Query: 625 SITQKLVELNGGRIEVQSTPGEGSEFTFTLPILKEKTAFTDQEVLEPTGWETAAAMXXXX 684 SI ++LV+L G I V+S G+GS F FTLP+ K D + + + Sbjct: 619 SIVRQLVQLQNGEIWVESEEGKGSAFHFTLPVAKND-PLPDAKKENMPQQQAVRDLPDVS 677 Query: 685 XXXXXXXXXXXCCFILIVDNDPVNRQVLANALRLENHTVITAESGPEALLQMRDFPELDL 744 +LIVD++ + ++LA+ L + VI A+SG EAL ++ +LDL Sbjct: 678 ISTPYYSKKMDASTVLIVDDNIESLKILADMLEGVPYQVIAAKSGHEAL-EVVSRSKLDL 736 Query: 745 IITDWVMPGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDL 804 +I D +MP M+GF +C IRERF + ELP+L++TA+ D AF AGAND L P + Sbjct: 737 VILDLMMPDMTGFEVCMKIRERFTMVELPVLIITAAIIDHDKYKAFHAGANDILQKPYNY 796 Query: 805 REFKARVRTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLL 864 EF ARV+ L+ M+ + + E+AFLQ+QIKPHFL+N LN II++ D + A E+ Sbjct: 797 TEFAARVKNLIMMKDTAAQATNMEMAFLQSQIKPHFLFNVLNTIIALSHLDIEKAREVTA 856 Query: 865 DLSQYLRSSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPL 924 D + YLR SFDFQN + EL +V SYL++EK RF DRL++++D+ +D +PPL Sbjct: 857 DFTNYLRMSFDFQNTSGMSSFKHELSIVNSYLSIEKTRFGDRLDVIYDIEEDIDFTLPPL 916 Query: 925 SIQPIVENAVNHGLMQKESGGTVTLSI-RQLPGHLVVAVTDDGIGMTQERIADILSDERT 983 IQP+VENAV+HG+ +K GG + L+ ++ + + D+GIGM E+ DI S T Sbjct: 917 MIQPLVENAVHHGISKKRGGGWIKLTAKKESENRYYIKIEDNGIGMPPEKQQDIFSSHFT 976 Query: 984 EGGIGLRNIQRRLLKMYGAGLSVISMPDQGTTISYTI 1020 +G++NI RRL G+ L++ S PD GT +S I Sbjct: 977 H-SVGMKNINRRLKHFCGSELNIESTPDSGTAVSMVI 1012 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,269,993,884 Number of extensions: 205500570 Number of successful extensions: 726548 Number of sequences better than 1.0e-05: 31482 Number of HSP's gapped: 703102 Number of HSP's successfully gapped: 33191 Length of query: 1026 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 880 Effective length of database: 1,685,228,013 Effective search space: 1483000651440 Effective search space used: 1483000651440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)