BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0014.p (374 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9Z9.1 C0Z9Z9_BREBN Probable two-component response regulator 246 2e-63 C0ZK91.1 C0ZK91_BREBN Putative uncharacterized protein 234 1e-59 B3KAY6.1 B3KAY6_9BACI Response regulator receiver 231 9e-59 Q9KBB2.1 Q9KBB2_BACHD BH2016 protein 201 9e-50 B8FU13.1 B8FU13_DESHD Response regulator receiver and SARP domai... 196 3e-48 >C0Z9Z9.1 C0Z9Z9_BREBN Probable two-component response regulator Length = 376 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 215/371 (57%), Gaps = 3/371 (0%) Query: 1 MKAILIDDEKPALQHLERLLAKDGRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEMN 60 MKAILIDDE+ AL +LE L G EI GK+T +G + ++++ DIVFLDI P++N Sbjct: 1 MKAILIDDEELALNYLEHQLLNIGDFEIVGKFTDPMIGKREIEKKEIDIVFLDIQTPKLN 60 Query: 61 GLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSREK 120 G+E AE + + ++IV++TAY YAI+AFELNA+DY+LKPV +RL T++R+QS + Sbjct: 61 GIELAEQLLEVKPQLQIVFVTAYERYAIKAFELNALDYVLKPVGKKRLQNTMKRIQSMME 120 Query: 121 QXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRKLQWRTSKAQEVFALLLHNRGQWILKD 180 + +S+ F+++ F+D + L+WRT+K Q++F L+ +RG + K Sbjct: 121 EHKTFSPQKSENLQMSL--FQQVTFVDGGQEI-PLRWRTAKVQQLFLYLVQHRGTTVNKT 177 Query: 181 TIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSFDVEDF 240 I++L+WP+ +PEKA L+T +YHIRK L + + + E Y++ E DV+ F Sbjct: 178 AIIELLWPELEPEKANHQLYTAIYHIRKTLAPFSKYFQISNTSEGYKVKLEQTILDVDQF 237 Query: 241 VRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMALRSAEYE 300 R + T + ++ ++L +GDYL EH+Y WAE +R+ LQ +VQ AL+ ++ Sbjct: 238 ERFFRSDLSLTAETIDEYEQAMALCKGDYLQEHNYIWAESERQRLQLQWVQTALKMVDWY 297 Query: 301 LGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGDFVGFRKHYEKFKALLHNELGI 360 + +A+T L + + P EE ++ +AD G K Y+ ++L NEL Sbjct: 298 YANDEWDKAITLCLDICQRYPLEEEAYFFLMKIFADTGRHSSVHKQYDHLTSVLWNELQE 357 Query: 361 HPGSLMDSWVQ 371 P + W Q Sbjct: 358 QPNPAITEWYQ 368 >C0ZK91.1 C0ZK91_BREBN Putative uncharacterized protein Length = 383 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 215/373 (57%), Gaps = 5/373 (1%) Query: 1 MKAILIDDEKPALQHLERLLAKD-GRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEM 59 M+A+L+DDE+ L HL+RLL KD G +++ G YT+ + + D+VFLDI MP + Sbjct: 1 MRALLVDDEQLPLMHLQRLLEKDVGGVKVVGAYTNPLEAIDQAISLQPDVVFLDINMPRI 60 Query: 60 NGLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSRE 119 +GLE E + +D S IV++T Y +YA++AFEL A+DY++KPV QRL KT++RL+ R Sbjct: 61 SGLEIGERLQGIDNSPEIVFVTGYDKYAVDAFELCALDYIMKPVQLQRLQKTMDRLRERI 120 Query: 120 KQXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRKLQWRTSKAQEVFALLLHNRGQWILK 179 K +SI F + F ++ ++++WRT+KA+E+FA LLH+R + I K Sbjct: 121 KS-AKEATPVKEESVVSIQCFNSILFHQPNQEPQEIKWRTNKARELFAYLLHHRNKMIDK 179 Query: 180 DTIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFS---QERYRLTYEDVSFD 236 D++++L+WPD+ K VT L+TT+Y IR+ LK +G++ + + Y+LT + + D Sbjct: 180 DSLIELLWPDYDGSKGVTQLYTTIYLIRQTLKRYGLHTISINKGNLEGGYKLTIDSATID 239 Query: 237 VEDFVRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMALRS 296 VE++ P + +++L+ Y GDY ++ Y WAE +R+ L+ ++ +A Sbjct: 240 VEEWENRLKQIPPLSLANMQEYEQLLAAYTGDYFGDYDYLWAEYERERLRRMWLSLAKTM 299 Query: 297 AEYELGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGDFVGFRKHYEKFKALLHN 356 + + LG R REA+ +Q + P E+ + ++ YA L D + Y+ + N Sbjct: 300 SSFYLGHGRVREAINVNQRIQNLHPLEEDSYMILMQLYASLDDHAAVEEQYQLLTSRWEN 359 Query: 357 ELGIHPGSLMDSW 369 ELG + W Sbjct: 360 ELGSAANEHITKW 372 >B3KAY6.1 B3KAY6_9BACI Response regulator receiver Length = 385 Score = 231 bits (589), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 207/373 (55%), Gaps = 6/373 (1%) Query: 1 MKAILIDDEKPALQHLERLLAKDGRLEIS--GKYTSARLGLQHLQQERADIVFLDIGMPE 58 MK IL+DDE AL++LER L K + I G YT+ G + + DIVFLDI +PE Sbjct: 1 MKVILVDDEPLALKYLERQLLKLDTMPIDVIGTYTNPFEGRKEILARDVDIVFLDISLPE 60 Query: 59 MNGLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSR 118 +NG+E AE + + IV++T Y EYA+ AFELNA+DY++KPV R+ KT+ERL+SR Sbjct: 61 LNGIELAEQLLEQKPHLCIVFVTGYHEYAVTAFELNAVDYIVKPVQIDRVAKTMERLRSR 120 Query: 119 EKQXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGR--KLQWRTSKAQEVFALLLHNRGQW 176 +++ FR++ +E G+ L WRT++AQE+F LL +RGQ Sbjct: 121 IASRPEEVLNPNRKIRMTM--FRQVMIEQPNEQGQFAMLHWRTTRAQEIFIYLLQHRGQL 178 Query: 177 ILKDTIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSFD 236 + K ++D++WP+F +KA L+T +YHIRK L+ + + + E Y L EDV D Sbjct: 179 VRKSALIDMLWPEFDMDKAYPQLYTAIYHIRKTLEPYDTRFQITNTTEGYVLNVEDVQLD 238 Query: 237 VEDFVRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMALRS 296 +E++ + P + +++ LY GDYL E+ Y WAE +R+ L+ ++ ++L Sbjct: 239 IEEWENWFTANPSVSADSIDGHLEMMKLYTGDYLQEYDYWWAEGERQRLKELWLSVSLSM 298 Query: 297 AEYELGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGDFVGFRKHYEKFKALLHN 356 AE+ + R EA+ S+Q + P E+ ++ Y G+ + + + +L + Sbjct: 299 AEWYVDQERFEEAVLCFASIQRLHPLEEKAYFSLMKIYGLQGNPAQVHRQFSLLRQVLKD 358 Query: 357 ELGIHPGSLMDSW 369 E+G P + W Sbjct: 359 EMGEEPSPYIKKW 371 >Q9KBB2.1 Q9KBB2_BACHD BH2016 protein Length = 337 Score = 201 bits (511), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 114/330 (34%), Positives = 177/330 (53%), Gaps = 8/330 (2%) Query: 44 QERADIVFLDIGMPEMNGLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPV 103 Q + D++FLDI +P++NG++ AE + + + IV+ITAY EYA++AFELNAIDY++KPV Sbjct: 3 QHKPDLIFLDINLPDINGIDFAEQVQSILPEVHIVFITAYDEYAVKAFELNAIDYVMKPV 62 Query: 104 TSQRLGKTLERLQSREKQXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRK----LQWRT 159 RL +T+ R+ R+ I F+ L F SE G+ + WRT Sbjct: 63 QRDRLNRTINRITDRKTVEPLRSQTDSKI----ISCFQTLHFQKGSEIGKAEPIDVNWRT 118 Query: 160 SKAQEVFALLLHNRGQWILKDTIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLV 219 +KA+E+FA L+ +R Q + KD +++ WP+ +K L++ +Y IRK+L + MN V Sbjct: 119 AKARELFAYLVQHRKQPVRKDVLLEFFWPESDVKKGYAQLYSAIYQIRKMLDSLQMNSTV 178 Query: 220 EFSQERYRLTYEDVSFDVEDFVRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAE 279 + Y+L DVE++ R P T+ S ++L Y+GDYL E Y WAE Sbjct: 179 VSFDKSYKLHLNGTKLDVEEWERELRQLPNITEDTLPSYRRLLETYKGDYLAEEAYLWAE 238 Query: 280 PKRKELQTAYVQMALRSAEYELGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGD 339 +R+ L+T Y + Y L +A+T +Q + P E L ++ YA +GD Sbjct: 239 NERERLRTLYHSTFNKVTTYYLECGYYTDAITLCQRVQTLHPLMETSYFLLMQVYAKMGD 298 Query: 340 FVGFRKHYEKFKALLHNELGIHPGSLMDSW 369 + YEK +L E GIH +++W Sbjct: 299 NHSVKSQYEKLNHVLEAEYGIHTSDSIENW 328 >B8FU13.1 B8FU13_DESHD Response regulator receiver and SARP domain protein Length = 365 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/365 (31%), Positives = 202/365 (55%), Gaps = 14/365 (3%) Query: 1 MKAILIDDEKPALQHLERLLAKDGRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEMN 60 M+ I++DDE+ +L L +LA +E+ G + +A L+++ + + D VFLDI +PE + Sbjct: 1 MEVIVVDDEELSLNRLGNMLAGMPGVEVCGLFYTAAEALRYINENKPDAVFLDICIPETD 60 Query: 61 GLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSREK 120 GL A I +D S ++V++T Y EYA+ AFEL A+DYL+KP++ RL KT++RLQ + Sbjct: 61 GLALANKIKDIDDSAKVVFVTGYDEYAVRAFELEAVDYLMKPISRDRLEKTVQRLQ---R 117 Query: 121 QXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRKLQWRTSKAQEVFALLLHNRGQWILKD 180 +S G R D S+ G + WR+ K +E+FA L+ + + +D Sbjct: 118 ACIGTGRQSKPQMKVSCFGGFRAAVGD-SDSG-IVNWRSPKTEELFAFLIFKKN--VSRD 173 Query: 181 TIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSFDVEDF 240 IV+ +W +P++A+TN+++T+Y+IRK L G+ + +++ R+ E +S D+ +F Sbjct: 174 EIVNTLWDGLEPDRALTNINSTMYYIRKALSPHGLEKCIAATRKEIRIDSELISCDLYEF 233 Query: 241 VRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMALRSAEY- 299 R G P D+ + D++ LY+G+ Y+W+ K + L++ ++ L +AEY Sbjct: 234 ERLLRGRPSSKDR-VETLDRLAELYKGELFQGKAYEWSFSKSRSLESGFISALLETAEYY 292 Query: 300 --ELGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGDFVGFRKHYEKFKALLHNE 357 + G + + R L E+DP++EEIC ++ +G + Y + + L E Sbjct: 293 REKQGYEQAEKMYKRAL---EIDPFNEEICGHIIQICLKMGRKSEALRLYLQMEKFLMEE 349 Query: 358 LGIHP 362 LG P Sbjct: 350 LGEKP 354 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,120,125,775 Number of extensions: 84577188 Number of successful extensions: 330274 Number of sequences better than 1.0e-05: 3520 Number of HSP's gapped: 341335 Number of HSP's successfully gapped: 3520 Length of query: 374 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 237 Effective length of database: 1,770,017,148 Effective search space: 419494064076 Effective search space used: 419494064076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)