BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0012.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJA1.1 B3KJA1_9BACI Putative uncharacterized protein                115   1e-24
B1DBS2.1 B1DBS2_9BACL Putative uncharacterized protein                 73   8e-12

>B3KJA1.1 B3KJA1_9BACI Putative uncharacterized protein
          Length = 71

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 61/71 (85%)

Query: 9  VDNGMNVILFEKMPEGELRVIEERTWSMNMVAALEHVNYIVVGSREYEAVEGRLNVDAGK 68
          +D GMNVILFEK P+GEL  IEER W+MNMVAALEHVNYIV G REYE +EGRLNVD GK
Sbjct: 1  MDYGMNVILFEKRPDGELVQIEERAWTMNMVAALEHVNYIVAGGREYETIEGRLNVDTGK 60

Query: 69 LELLLVPMRTE 79
          LELLLVPMR +
Sbjct: 61 LELLLVPMRND 71


>B1DBS2.1 B1DBS2_9BACL Putative uncharacterized protein
          Length = 78

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%)

Query: 13 MNVILFEKMPEGELRVIEERTWSMNMVAALEHVNYIVVGSREYEAVEGRLNVDAGKLELL 72
          M V+LF K  E  L+ I++R W   M+A LEHVNY+ V   EY+ +EG+LN+DAG+LELL
Sbjct: 12 MRVVLFVKDSERGLKQIDDREWDAAMIATLEHVNYLTVHGEEYQTLEGKLNLDAGQLELL 71

Query: 73 LVPMRTE 79
          +V M  +
Sbjct: 72 VVKMNNK 78


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 461,442,241
Number of extensions: 15278909
Number of successful extensions: 31833
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 31833
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 125 (52.8 bits)