BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0011.p
         (250 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJA2.1 B3KJA2_9BACI Putative uncharacterized protein                186   1e-45
B1DBS3.1 B1DBS3_9BACL Putative uncharacterized protein                140   1e-31

>B3KJA2.1 B3KJA2_9BACI Putative uncharacterized protein
          Length = 224

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 114/172 (66%), Gaps = 6/172 (3%)

Query: 24  KESAASRLFTPDGKPLRVLSTSLGIALLANALFIPXXXXX-----XXXXXEEPKLVSWST 78
           K+  AS+  TP+GKP+RVLS+SLGIALLANA  +                EEP+LVSWST
Sbjct: 8   KDQPASKWLTPEGKPIRVLSSSLGIALLANAFLVSGAAAKNLASEAVTSSEEPQLVSWST 67

Query: 79  EEVKAYFDKNVDWNIPYPE-ENAGEVLQEGQXXXXXXXXXXINNYGGYNSGFGWDDLLLY 137
           EEVK YFDKNVDWNIP+P  E   E    G           INNYGGYNSGFGWDDLLLY
Sbjct: 68  EEVKKYFDKNVDWNIPFPSAEEFEEEPAVGASAGSGGGTTVINNYGGYNSGFGWDDLLLY 127

Query: 138 HMLFNSGSFYSSRGWYNDRPTYYGGTRTKYKAPSYNSGSFQNKPVAGSVVKP 189
           HMLFN+GS+YSS GWYN+   YY      YK  +Y+SG+FQNKPV  S V+P
Sbjct: 128 HMLFNNGSYYSSSGWYNNHRGYYANNGKPYKPRTYSSGTFQNKPVVNSNVRP 179


>B1DBS3.1 B1DBS3_9BACL Putative uncharacterized protein
          Length = 233

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 95/169 (56%), Gaps = 14/169 (8%)

Query: 35  DGKPLRVLSTSLGIALLANALFIPXXXXXXXXXXE------------EPKLVSWSTEEVK 82
           +G PL+VLSTSLGIALLAN   +P                        PKLV WS+E VK
Sbjct: 15  EGIPLKVLSTSLGIALLANLAAVPVHAGTTSSTESPTVAPTVSSTTPSPKLVEWSSEAVK 74

Query: 83  AYFDKNVDWNIPYPEENA--GEVLQEGQXXXXXXXXXXINNYGGYNSGFGWDDLLLYHML 140
            Y+D  VDWN+P P +N    E +QE                   +SGFGWDDL+LYH+L
Sbjct: 75  RYYDPAVDWNLPLPSDNELDKEAVQESPQVTAGGGSGGSTTIVHQSSGFGWDDLMLYHLL 134

Query: 141 FNSGSFYSSRGWYNDRPTYYGGTRTKYKAPSYNSGSFQNKPVAGSVVKP 189
           FN+GS YSS+ W +   +YY G+   Y+  SY++G FQNKPVAGS V P
Sbjct: 135 FNNGSSYSSQTWASSHRSYYYGSTRPYEPKSYSNGKFQNKPVAGSTVSP 183


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,117,778,115
Number of extensions: 42382071
Number of successful extensions: 66782
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 66777
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 118
Effective length of database: 1,817,122,223
Effective search space: 214420422314
Effective search space used: 214420422314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)