BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0004.p (521 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DA54.1 B1DA54_9BACL Putative uncharacterized protein 309 6e-82 Q8Y9J9.1 Q8Y9J9_LISMO Lmo0528 protein 208 1e-51 Q4EIG6.1 Q4EIG6_LISMO Putative uncharacterized protein 200 3e-49 A0AFX4.1 A0AFX4_LISW6 Complete genome 199 7e-49 Q4EVT1.1 Q4EVT1_LISMO Putative uncharacterized protein 198 1e-48 >B1DA54.1 B1DA54_9BACL Putative uncharacterized protein Length = 524 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 179/462 (38%), Positives = 261/462 (56%), Gaps = 10/462 (2%) Query: 33 QDASAPQRVLLLYDSLGKGTVREGNVSELQRLLSAMGRQVTLLSLDHYEPGTMDSFTRVI 92 Q++ RVLL+YDSLG + GN+ LQR+L ++G VT ++ D Y+P + + +++ Sbjct: 35 QNSKNASRVLLVYDSLGVDSPAAGNIEALQRMLLSLGATVTTIASDAYKPEMAEDYAKLV 94 Query: 93 TVMNAADLAPADRSYLEDAERYTGQALHVGYHPPARLLKDMQLTAGTADEDLADLTVGEF 152 TV N DL S +TG+ LH+G +PP L + L TA L+VG Sbjct: 95 TVCNTEDLC---GSITAGMAAFTGEWLHIGPNPPEVLRGKLALRTETASRQSLKLSVGGL 151 Query: 153 TASNLQVRGMAYIAAVKAERTYGSFTLKSSGRKLPFAASAGSYTYVPYLERDNASVVGMA 212 ++ V +AYI K E TYG T K PFA SAG Y YVPY E N S + +A Sbjct: 152 FEDHIFVNRLAYITEGKGE-TYGQMTSSEGAVKTPFAVSAGGYAYVPYFESGNLSELAVA 210 Query: 213 YVLREWLGNKTVPQTLLVLREIYPFSDLDLLEETADRLYKAGIPFIASIRPVFSNTDFPA 272 YVLR WLG + Q+ L++R I PF DLD LE +++LY AGIPF+ S+ P+F+NTD+PA Sbjct: 211 YVLRTWLGVEAPTQSHLLIRGITPFIDLDRLEALSEQLYNAGIPFLVSVSPLFNNTDYPA 270 Query: 273 MQRYLDALKVVQSRNGSILVNAPEVMPSINSSDHTLGK-KMSGFVNLLVKNGIAPLGIGA 331 MQRYL AL+ VQS NGS+LV P P+ D ++ K +M GF+N L GIAPLG+ Sbjct: 271 MQRYLAALQTVQSYNGSVLVQVP--TPTSAGQDPSILKTQMDGFLNHLADAGIAPLGMTG 328 Query: 332 NLYWAYDREYAEAGMGFFDSAVLFPDETVLHMEQTNVSKAFASSLYSLTPEYLQRLEHHG 391 ++ A ++E EAG F D+ +LF +E+ + +T + FA+S Y++ L ++ H Sbjct: 329 DMKRAQEKEGREAGFAFSDTTILFANESGVTTRETEAVQPFAASPYTMPASVLLQISHEN 388 Query: 392 HAMPQLPLNTAVTAELPEDEAGLDALLQTLERQWISFADYKQGRHQTVTDENTVVSEDGV 451 P P+N AVT + E +A + ++ W+ FAD+K H + + S G Sbjct: 389 KIWPAFPVNLAVTFDWFESDASQEEAVREAAGSWLPFADFKSETHSLSSSAHKAESRSGA 448 Query: 452 VLVNGTP--LNVGYAPEAISSDYQYKEEQVRSFTKLFSVQSK 491 +L++G P L PE ++ E++V +F LFSVQS+ Sbjct: 449 LLLDGKPADLQDQAEPEEQAAVVAQPEQKV-TFHALFSVQSR 489 >Q8Y9J9.1 Q8Y9J9_LISMO Lmo0528 protein Length = 498 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 142/494 (28%), Positives = 227/494 (45%), Gaps = 27/494 (5%) Query: 35 ASAPQRVLLLYDSLGKGTVREGNVSELQRLLSAMGRQVTLLSLDHYEPGTMDSFTRVITV 94 A V++ YDSL GT EGN+ L R+L+++G++VT+ S + E + + +I + Sbjct: 25 AKTDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWE--ENPDLSQTSEIIVL 82 Query: 95 MNAADLAPADRSYLEDAERYTGQALHVGYHPPARLLKDMQL-TAGTADEDLADLTVGEFT 153 N D D + E + + ++G +PP L +QL T D + T + Sbjct: 83 QNKNDGLAND--WTEKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITDASITIQTEAGLS 140 Query: 154 ASNLQVRGMAYIAAVKAERTYGSFTLKSSGRKLPFAASAGSYTYVPYLERDNASVVGMAY 213 V I + K ++G +G+ + AG+Y Y P + DN S + Sbjct: 141 GKPQLVNETNLITSYKG-TSFGEMDAAENGQA-AYGVQAGNYAYAPLFQTDNTSEFTLMD 198 Query: 214 VLREWLGNKTVPQTLLVLREIYPFSDLDLLEETADRLYKAGIPFIASIRPVFSNTDFPAM 273 VL+ KT + + PF D DLL++TAD Y+ GIPFI S PVF N DF A Sbjct: 199 VLKALFDIKTTTNQYAFITGVNPFVDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAA 258 Query: 274 QRYLDALKVVQSRNGSILVNAPEVMPSINSSDHTLGKKMSGFVNLLVKNGIAPLGIGANL 333 + Y + L+ VQ++NG+I++N P V +S L M VN +N IAP+G+ A L Sbjct: 259 KNYAEILRYVQAKNGTIMLNVPAVTYG-DSPSGELESIMQKSVNFFAENDIAPIGVTAEL 317 Query: 334 YWAYDREYAEAGMGFFDSAVLFPDETVLHMEQTNVSKAFASSLYSLTPEYLQRLEHHGHA 393 YW +D+ Y G F++ +L P++ ++H + N AF S YS+ ++ + Sbjct: 318 YWNFDKAYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRN- 376 Query: 394 MPQLPLNTAVTAELPEDEAGLDALLQTLERQWISFADYKQGRHQTVTDENTVVSEDGVVL 453 P++ A+T ++E L A + L IS D++ H T+++T+ S G + Sbjct: 377 ---FPVDIAITYSFFDNEKELKAAAEELANDNIS--DFRFQNHGVKTNKDTIESSAGSLY 431 Query: 454 VNGTPLNVGYAPEAISSDYQYKE------EQVRSFTKLFSVQSKXXXXXXXXXXXXXXXX 507 +N P+ A+ D Y + +Q S F Q+ Sbjct: 432 INNQPV-------ALDGDLNYIKTKNKAVKQTGSLEGFFGYQNTFFTIVIILSLGIIGVL 484 Query: 508 XXXXYRLYRKKYLK 521 YRLY KKY+K Sbjct: 485 FVFGYRLYMKKYMK 498 >Q4EIG6.1 Q4EIG6_LISMO Putative uncharacterized protein Length = 498 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 138/488 (28%), Positives = 226/488 (46%), Gaps = 15/488 (3%) Query: 35 ASAPQRVLLLYDSLGKGTVREGNVSELQRLLSAMGRQVTLLSLDHYEPGTMDSFTRVITV 94 A V++ YDSL GT EGN+ L R+L+++G++VT+ S + E + + +I + Sbjct: 25 AKTDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWE--ENPDLSQTSEIIVL 82 Query: 95 MNAADLAPADRSYLEDAERYTGQALHVGYHPPARLLKDMQL-TAGTADEDLADLTVGEFT 153 N D +D + E + + ++G +PP L +QL T + + T + Sbjct: 83 QNKKDGLASD--WTEKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLS 140 Query: 154 ASNLQVRGMAYIAAVKAERTYGSFTLKSSGRKLPFAASAGSYTYVPYLERDNASVVGMAY 213 V I + K ++G +G+ + AG+Y Y P + DN S + Sbjct: 141 GKPQLVNETNLITSYKG-TSFGEMDAAENGQA-AYGVQAGNYAYAPLFQADNTSEFALMD 198 Query: 214 VLREWLGNKTVPQTLLVLREIYPFSDLDLLEETADRLYKAGIPFIASIRPVFSNTDFPAM 273 VL+ KT + + PF D DLL++TAD Y+ GIPFI S PVF N DF A Sbjct: 199 VLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAA 258 Query: 274 QRYLDALKVVQSRNGSILVNAPEVMPSINSSDHTLGKKMSGFVNLLVKNGIAPLGIGANL 333 + Y + L+ VQ++NG+I++N P V +S L K M V+ +N +APLG+ A L Sbjct: 259 KNYAEILRYVQAKNGTIMMNVPAVTYG-DSPAGELEKIMQKSVHFFAENDVAPLGVTAEL 317 Query: 334 YWAYDREYAEAGMGFFDSAVLFPDETVLHMEQTNVSKAFASSLYSLTPEYLQRLEHHGHA 393 YW +D+ Y G F++ +L P++ ++H + N AF S YS+ ++ Sbjct: 318 YWNFDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEG--- 374 Query: 394 MPQLPLNTAVTAELPEDEAGLDALLQTLERQWISFADYKQGRHQTVTDENTVVSEDGVVL 453 P++ A+T ++E L A + L IS D++ H T+++T+ S G + Sbjct: 375 -RTFPVDIAITYPFFDNEKELKAAAEELANDNIS--DFRFQDHGVKTNKDTIESSAGSLY 431 Query: 454 VNGTPLNVGYAPEAISSDYQYKEEQVRSFTKLFSVQSKXXXXXXXXXXXXXXXXXXXXYR 513 +N + + I + + +Q S F Q+ YR Sbjct: 432 INNQSVTLDGDLNYIKTKNK-TVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYR 490 Query: 514 LYRKKYLK 521 LY KKY+K Sbjct: 491 LYMKKYMK 498 >A0AFX4.1 A0AFX4_LISW6 Complete genome Length = 499 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 136/501 (27%), Positives = 233/501 (46%), Gaps = 28/501 (5%) Query: 26 PVQARAVQDASAPQRVLLLYDSLGKGTVREGNVSELQRLLSAMGRQVTLLSLDHYEPGTM 85 PV A+A D V++ YDSL KGT EGN+ L R+L+ +G++VT S + E + Sbjct: 22 PVTAKADND------VVVFYDSLAKGTDNEGNMDSLLRMLNTLGKRVTTYSWE--ENPDL 73 Query: 86 DSFTRVITVMNAADLAPADRSYLEDAERYTGQALHVGYHPPARLLKDMQL-TAGTADEDL 144 + +I + N D + + E + ++G +PPA L+ +QL T D + Sbjct: 74 SQASEIIVLQNKKD--GLTKEWAEKLTENKAKIAYIGSNPPAFLINQLQLKTKAITDSSI 131 Query: 145 ADLTVGEFTASNLQVRGMAYIAAVKAERTYGSFTLKSSGRKLPFAASAGSYTYVPYLERD 204 T V + I K E +G +G + + G+Y Y P + Sbjct: 132 TIQTESGLAGKPQLVNEIELITTYKGEG-FGKIDAAENGEAV-YGVREGNYAYTPIFQEH 189 Query: 205 NASVVGMAYVLREWLGNKTVPQTLLVLREIYPFSDLDLLEETADRLYKAGIPFIASIRPV 264 N S + +L+ K +++++I PF D DLL++TAD Y+ G+PFI S P+ Sbjct: 190 NTSEFALMDLLKAVFEIKASSNQYVLIKDINPFVDFDLLKKTADTFYEQGVPFIVSAGPI 249 Query: 265 FSNTDFPAMQRYLDALKVVQSRNGSILVNAPEVMPSINSSDHTLGKKMSGFV----NLLV 320 F N DF A + Y + ++ VQ++NG+I++N +P++ D G ++ G V + Sbjct: 250 FYNQDFQAAKNYAEIIRYVQAKNGTIMMN----VPAVTYGDSPAG-ELEGIVQKSLHFFA 304 Query: 321 KNGIAPLGIGANLYWAYDREYAEAGMGFFDSAVLFPDETVLHMEQTNVSKAFASSLYSLT 380 +N +A LG+ A LYW +D+ Y G F++ +L P++ ++H + N AF S YS+ Sbjct: 305 ENDVAALGVTAELYWNFDKVYGLEGFAPFNTGILLPNQKIIHTTKKNNGSAFEISPYSVA 364 Query: 381 PEYLQRLEHHGHAMPQLPLNTAVTAELPEDEAGLDALLQTLERQWISFADYKQGRHQTVT 440 ++ + P++ AVT ++E + A L + IS D++ H T Sbjct: 365 SDFYMTITDG----KDFPVDIAVTYSFFKNEKEIKAAADELANKNIS--DFRFKDHGVKT 418 Query: 441 DENTVVSEDGVVLVNGTPLNVGYAPEAISSDYQYKEEQVRSFTKLFSVQSKXXXXXXXXX 500 +++T+ S G + +N + + + I + ++Q S F Q+ Sbjct: 419 NQDTLESTAGSLYINNQSVTLDGDLKYIKTTKNKMQKQAGSLEGFFGYQNTFFTIVIVLS 478 Query: 501 XXXXXXXXXXXYRLYRKKYLK 521 YRLY KKY+K Sbjct: 479 LGIIGILFVFGYRLYMKKYMK 499 >Q4EVT1.1 Q4EVT1_LISMO Putative uncharacterized protein Length = 498 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 136/488 (27%), Positives = 224/488 (45%), Gaps = 15/488 (3%) Query: 35 ASAPQRVLLLYDSLGKGTVREGNVSELQRLLSAMGRQVTLLSLDHYEPGTMDSFTRVITV 94 A V++ YDSL GT EGN+ L R+L+++G++VT+ S + E + + +I + Sbjct: 25 AKTDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWE--ENPDLSQTSEIIVL 82 Query: 95 MNAADLAPADRSYLEDAERYTGQALHVGYHPPARLLKDMQL-TAGTADEDLADLTVGEFT 153 N D + E + + ++G +PP + +QL T D + T + Sbjct: 83 QNKKD--GLSNEWTEKLAKSKAKIAYIGENPPTFITDKLQLKTKAITDASITIQTEAGLS 140 Query: 154 ASNLQVRGMAYIAAVKAERTYGSFTLKSSGRKLPFAASAGSYTYVPYLERDNASVVGMAY 213 V I + K ++G +G+ + AG+Y Y P + DN S + Sbjct: 141 GKPQLVNETNLITSYKG-TSFGEMDAAENGQA-AYGVQAGNYAYAPLFQTDNTSEFTLMD 198 Query: 214 VLREWLGNKTVPQTLLVLREIYPFSDLDLLEETADRLYKAGIPFIASIRPVFSNTDFPAM 273 VL+ KT + + PF D DLL++TAD Y+ GIPFI S PVF N DF A Sbjct: 199 VLKALFDIKTTTNQYAFITGVNPFVDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAA 258 Query: 274 QRYLDALKVVQSRNGSILVNAPEVMPSINSSDHTLGKKMSGFVNLLVKNGIAPLGIGANL 333 + Y + L+ VQ++NG+I++N P V +S L M V+ +N +APLG+ A L Sbjct: 259 KNYAEILRYVQAKNGTIMMNVPAVTYG-DSPSGELESIMQKSVHFFAENDVAPLGVTAEL 317 Query: 334 YWAYDREYAEAGMGFFDSAVLFPDETVLHMEQTNVSKAFASSLYSLTPEYLQRLEHHGHA 393 YW +D+ Y G F++ +L P++ ++H + N AF S YS+ ++ + Sbjct: 318 YWNFDKVYGLEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTDGRN- 376 Query: 394 MPQLPLNTAVTAELPEDEAGLDALLQTLERQWISFADYKQGRHQTVTDENTVVSEDGVVL 453 P++ A+T ++E L A + L IS D++ H T+++T+ S G + Sbjct: 377 ---FPVDIAITYSFFDNEKELKAAAEELANDNIS--DFRFQDHGVKTNKDTIESSAGSLY 431 Query: 454 VNGTPLNVGYAPEAISSDYQYKEEQVRSFTKLFSVQSKXXXXXXXXXXXXXXXXXXXXYR 513 +N + + I + + +Q S F Q+ YR Sbjct: 432 INNQSVTLDGDLNYIKTKNK-TVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYR 490 Query: 514 LYRKKYLK 521 LY KKY+K Sbjct: 491 LYMKKYMK 498 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,798,179,014 Number of extensions: 115705488 Number of successful extensions: 305193 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 305149 Number of HSP's successfully gapped: 22 Length of query: 521 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 381 Effective length of database: 1,741,754,103 Effective search space: 663608313243 Effective search space used: 663608313243 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)