BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0001.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DA57.1 B1DA57_9BACL Putative uncharacterized protein 318 5e-85 A0AFX7.1 A0AFX7_LISW6 Complete genome 268 3e-70 Q723B9.1 Q723B9_LISMF Putative uncharacterized protein 265 3e-69 C1L048.1 C1L048_LISMC Putative uncharacterized protein 265 3e-69 Q4EIG3.1 Q4EIG3_LISMO Putative uncharacterized protein 265 3e-69 >B1DA57.1 B1DA57_9BACL Putative uncharacterized protein Length = 283 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 207/284 (72%), Gaps = 1/284 (0%) Query: 1 VRRNRSSLFSDLAFLVFLVLNFICIVFIAGSPDHYIQXXXXXXXXXXXXXVTYFTTVTAG 60 +RRN +SL SD FL+ + F+CIVF A P+ Y+ VTYFTT+T G Sbjct: 1 MRRN-TSLLSDGGFLLLFIACFVCIVFTARDPNLYLHNIIFLNVAFLIAIVTYFTTITTG 59 Query: 61 LVLNLAFIFGYGFFVLYQTVSEGGTIGVNTYFWLIMTPLLTVVIWVFTSRTRELQAENEL 120 L+LN+AF+FGYG F +YQTV +GG + +YFWLIMTP+ T + W+FT +++LQ ENE Sbjct: 60 LILNIAFVFGYGTFTIYQTVVQGGVVTSQSYFWLIMTPVFTAITWMFTLASKQLQEENEA 119 Query: 121 LEKKTANLAAVDENTDLRNIISFQKDASLFTGISTRYSIPLTLLVVKVKYWSEIRRLIPE 180 L+KK A+LA +DE T+L+N++SFQKD ++F +S RY IPLTLLV+ VKYW+E+RR+I E Sbjct: 120 LQKKNASLATMDEGTNLKNMLSFQKDTTVFMALSDRYKIPLTLLVLNVKYWNELRRMIGE 179 Query: 181 EQLSEAIYDVSQLSQSSIRTNDALYLLDKEEATWGLLLFTDREGAKIVIERIKFKLQELN 240 EQL+ A+Y+++ +SQ+SIR ND+LY+L +E TWGLLLFTDR+GA IV+ R++ +L E+N Sbjct: 180 EQLNAAVYNITAISQTSIRANDSLYMLSQENPTWGLLLFTDRDGADIVMNRLRSRLAEIN 239 Query: 241 DTEFSAKYKVNLGLKIGAVQYEAETIENPFDFILQAKKQLEYDV 284 ++E + + L LK+GA +Y E P ++I +A+K+LEYDV Sbjct: 240 ESERATSNRFELNLKMGAYEYNREETPTPLEWITRARKELEYDV 283 >A0AFX7.1 A0AFX7_LISW6 Complete genome Length = 284 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/284 (44%), Positives = 194/284 (68%) Query: 1 VRRNRSSLFSDLAFLVFLVLNFICIVFIAGSPDHYIQXXXXXXXXXXXXXVTYFTTVTAG 60 +++ ++LF+D+ FL F++L FI I F+ +PD Y++ +TYFT +T G Sbjct: 1 MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNITFLLVIITYFTNLTLG 60 Query: 61 LVLNLAFIFGYGFFVLYQTVSEGGTIGVNTYFWLIMTPLLTVVIWVFTSRTRELQAENEL 120 L+LN+ +IF Y +++Y+ V+ GV +YFWLI+TPL TV +FT T LQAEN Sbjct: 61 LILNVLYIFIYATYIIYEIVANQIAYGVGSYFWLIITPLFTVASAMFTRNTSRLQAENTK 120 Query: 121 LEKKTANLAAVDENTDLRNIISFQKDASLFTGISTRYSIPLTLLVVKVKYWSEIRRLIPE 180 ++++ L +D+ T L+NI+SFQ D +F+ IS RY +PL+L+V+KV++W E++R E Sbjct: 121 IKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLPLSLMVIKVRHWRELKRFQSE 180 Query: 181 EQLSEAIYDVSQLSQSSIRTNDALYLLDKEEATWGLLLFTDREGAKIVIERIKFKLQELN 240 +++ A+ D+S + +S IRT+D LYLLDKE+ATWGLLL TD G K+V +RIK ++ E N Sbjct: 181 DEMRLALQDISSILESCIRTSDVLYLLDKEDATWGLLLLTDEPGGKLVADRIKSRIAEAN 240 Query: 241 DTEFSAKYKVNLGLKIGAVQYEAETIENPFDFILQAKKQLEYDV 284 +F+AKY+V L L+IG Q++++ ++ P DFI A K+LEYDV Sbjct: 241 TEDFAAKYRVKLELRIGTSQFDSDKVKTPLDFIDLATKELEYDV 284 >Q723B9.1 Q723B9_LISMF Putative uncharacterized protein Length = 284 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/284 (44%), Positives = 192/284 (67%) Query: 1 VRRNRSSLFSDLAFLVFLVLNFICIVFIAGSPDHYIQXXXXXXXXXXXXXVTYFTTVTAG 60 +++ ++LF+D+ FL F++L FI I F+ +PD Y++ +TYFT +T G Sbjct: 1 MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNITFLLVIITYFTNLTLG 60 Query: 61 LVLNLAFIFGYGFFVLYQTVSEGGTIGVNTYFWLIMTPLLTVVIWVFTSRTRELQAENEL 120 L+LN+ +IF Y +++Y+ V+ G +YFWLI+TPL TV +FT T LQ EN Sbjct: 61 LILNVLYIFIYATYIIYEIVANQIAYGFGSYFWLIITPLFTVASAMFTRNTSRLQEENTK 120 Query: 121 LEKKTANLAAVDENTDLRNIISFQKDASLFTGISTRYSIPLTLLVVKVKYWSEIRRLIPE 180 ++++ L +D+ T L+NI+SFQ D +F+ IS RY +PL+L+V+KV++W E++R E Sbjct: 121 IKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLPLSLMVIKVRHWRELKRFQSE 180 Query: 181 EQLSEAIYDVSQLSQSSIRTNDALYLLDKEEATWGLLLFTDREGAKIVIERIKFKLQELN 240 E++ A+ D+S + ++ IRT+D LYLLDK++ATWGLLL TD G K+V +RIK ++ E N Sbjct: 181 EEMRLALQDISAILETCIRTSDVLYLLDKDDATWGLLLLTDEPGGKLVADRIKSRIAEAN 240 Query: 241 DTEFSAKYKVNLGLKIGAVQYEAETIENPFDFILQAKKQLEYDV 284 EF+AKY+V L L+IG Q+++E ++ P DFI A K+LEYDV Sbjct: 241 TEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLATKELEYDV 284 >C1L048.1 C1L048_LISMC Putative uncharacterized protein Length = 284 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/284 (44%), Positives = 192/284 (67%) Query: 1 VRRNRSSLFSDLAFLVFLVLNFICIVFIAGSPDHYIQXXXXXXXXXXXXXVTYFTTVTAG 60 +++ ++LF+D+ FL F++L FI I F+ +PD Y++ +TYFT +T G Sbjct: 1 MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNITFLLVIITYFTNLTLG 60 Query: 61 LVLNLAFIFGYGFFVLYQTVSEGGTIGVNTYFWLIMTPLLTVVIWVFTSRTRELQAENEL 120 L+LN+ +IF Y +++Y+ V+ G +YFWLI+TPL TV +FT T LQ EN Sbjct: 61 LILNVLYIFIYATYIIYEIVANQIAYGFGSYFWLIITPLFTVASAMFTRNTSRLQEENTK 120 Query: 121 LEKKTANLAAVDENTDLRNIISFQKDASLFTGISTRYSIPLTLLVVKVKYWSEIRRLIPE 180 ++++ L +D+ T L+NI+SFQ D +F+ IS RY +PL+L+V+KV++W E++R E Sbjct: 121 IKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLPLSLMVIKVRHWRELKRFQSE 180 Query: 181 EQLSEAIYDVSQLSQSSIRTNDALYLLDKEEATWGLLLFTDREGAKIVIERIKFKLQELN 240 E++ A+ D+S + ++ IRT+D LYLLDK++ATWGLLL TD G K+V +RIK ++ E N Sbjct: 181 EEMRLALQDISAILETCIRTSDVLYLLDKDDATWGLLLLTDEPGGKLVADRIKSRIAEAN 240 Query: 241 DTEFSAKYKVNLGLKIGAVQYEAETIENPFDFILQAKKQLEYDV 284 EF+AKY+V L L+IG Q+++E ++ P DFI A K+LEYDV Sbjct: 241 TEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLATKELEYDV 284 >Q4EIG3.1 Q4EIG3_LISMO Putative uncharacterized protein Length = 284 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/284 (44%), Positives = 192/284 (67%) Query: 1 VRRNRSSLFSDLAFLVFLVLNFICIVFIAGSPDHYIQXXXXXXXXXXXXXVTYFTTVTAG 60 +++ ++LF+D+ FL F++L FI I F+ +PD Y++ +TYFT +T G Sbjct: 1 MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNITFLLVIITYFTNLTLG 60 Query: 61 LVLNLAFIFGYGFFVLYQTVSEGGTIGVNTYFWLIMTPLLTVVIWVFTSRTRELQAENEL 120 L+LN+ +IF Y +++Y+ V+ G +YFWLI+TPL TV +FT T LQ EN Sbjct: 61 LILNVLYIFIYATYIIYEIVANQIAYGFGSYFWLIITPLFTVASAMFTRNTSRLQEENTK 120 Query: 121 LEKKTANLAAVDENTDLRNIISFQKDASLFTGISTRYSIPLTLLVVKVKYWSEIRRLIPE 180 ++++ L +D+ T L+NI+SFQ D +F+ IS RY +PL+L+V+KV++W E++R E Sbjct: 121 IKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLPLSLMVIKVRHWRELKRFQSE 180 Query: 181 EQLSEAIYDVSQLSQSSIRTNDALYLLDKEEATWGLLLFTDREGAKIVIERIKFKLQELN 240 E++ A+ D+S + ++ IRT+D LYLLDK++ATWGLLL TD G K+V +RIK ++ E N Sbjct: 181 EEMRLALQDISAILETCIRTSDVLYLLDKDDATWGLLLLTDEPGGKLVADRIKSRIAEAN 240 Query: 241 DTEFSAKYKVNLGLKIGAVQYEAETIENPFDFILQAKKQLEYDV 284 EF+AKY+V L L+IG Q+++E ++ P DFI A K+LEYDV Sbjct: 241 TEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLATKELEYDV 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,462,584,332 Number of extensions: 53319482 Number of successful extensions: 152391 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 152399 Number of HSP's successfully gapped: 35 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)