BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0084.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB31.1 B3KB31_9BACI Pyruvate carboxyltransferase 555 e-156 B1DIL3.1 B1DIL3_9BACL Pyruvate carboxyltransferase 518 e-145 A8EUX0.1 A8EUX0_ARCB4 HMGL family protein EC=4.1.3.- 274 8e-72 C4Z863.1 C4Z863_9FIRM HMGL family protein 237 1e-60 C4Z4L3.1 C4Z4L3_9FIRM Putative uncharacterized protein 232 3e-59 >B3KB31.1 B3KB31_9BACI Pyruvate carboxyltransferase Length = 321 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/319 (82%), Positives = 288/319 (90%) Query: 1 VKSNKSKIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGAEG 60 +KS+++KIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGA+ Sbjct: 2 IKSSQTKIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGADQ 61 Query: 61 AGPWRFLNDDFLRKVIPQKGHTKLSALVDIGRVDENDILPRSESMLDLIRVACYSKDVDK 120 AGPWRFL+D+FLR+VIP KG TKLSALVDIGRVDE+DILPR ES+LDLIRVACY KDVDK Sbjct: 62 AGPWRFLDDEFLREVIPHKGKTKLSALVDIGRVDEDDILPREESLLDLIRVACYIKDVDK 121 Query: 121 ALQLVQTFHDLGYETTINIMALSNVMENELLEAFEQIREXXXXXXXXXXXXGSLDHNDIH 180 AL LVQTFHD GYETT+NIMALSNVMENELLEAFE IRE GSLDH D+ Sbjct: 122 ALALVQTFHDRGYETTLNIMALSNVMENELLEAFEMIRESVVDVVYIVDSYGSLDHKDME 181 Query: 181 YLVDKFQTHLPNKRLGVHTHNNLQLAFSNTLLASEKGVELLDASCYGMGRAAGNCPTELL 240 YLV+KF+THLPNKRLGVHTHNN+QLAFSNTL+A++ GVELLDAS YGMGRAAGNCPTELL Sbjct: 182 YLVNKFKTHLPNKRLGVHTHNNMQLAFSNTLVAADLGVELLDASVYGMGRAAGNCPTELL 241 Query: 241 VTHLKNTRYTLRPVLDILERLMIPLREKEEWGYIIPYMITGTLDEHPRSAMALRSSEDKD 300 VTHLK T+Y LRPVLDI+ER MIPLREKEEWGYI+PYMITGTLDEHPRSAMALR+S+DKD Sbjct: 242 VTHLKGTKYELRPVLDIIERFMIPLREKEEWGYIMPYMITGTLDEHPRSAMALRASDDKD 301 Query: 301 KAVEFYDKLTTPEVNFGDK 319 K V+FYDKLTTPEV F K Sbjct: 302 KIVDFYDKLTTPEVTFDKK 320 >B1DIL3.1 B1DIL3_9BACL Pyruvate carboxyltransferase Length = 320 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 246/313 (78%), Positives = 277/313 (88%) Query: 2 KSNKSKIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGAEGA 61 K++ KIVDCTIRDGGLVNNWDFSVEFVQ+LY LNEAGVDYMEIGYKNSPKLLKGA+ A Sbjct: 4 KTSHCKIVDCTIRDGGLVNNWDFSVEFVQHLYNTLNEAGVDYMEIGYKNSPKLLKGADTA 63 Query: 62 GPWRFLNDDFLRKVIPQKGHTKLSALVDIGRVDENDILPRSESMLDLIRVACYSKDVDKA 121 GPWRFL+D+FL++VIP KG+TKLSALVDIGRVDENDILPRSES+LDLIRVACY +DVDKA Sbjct: 64 GPWRFLDDNFLKQVIPNKGNTKLSALVDIGRVDENDILPRSESLLDLIRVACYIQDVDKA 123 Query: 122 LQLVQTFHDLGYETTINIMALSNVMENELLEAFEQIREXXXXXXXXXXXXGSLDHNDIHY 181 LQLVQ FH+ GYETT+NIMALSNVMEN+L+EAFE I+E GSL ND Y Sbjct: 124 LQLVQLFHERGYETTLNIMALSNVMENQLIEAFELIKESVVDVVYIVDSYGSLKPNDYSY 183 Query: 182 LVDKFQTHLPNKRLGVHTHNNLQLAFSNTLLASEKGVELLDASCYGMGRAAGNCPTELLV 241 L++KFQ HLPNKRLG+HTHNN+QLAF+NTLLA+EKGVELLDAS YGMGRAAGNC TELLV Sbjct: 184 LIEKFQHHLPNKRLGIHTHNNMQLAFANTLLAAEKGVELLDASVYGMGRAAGNCNTELLV 243 Query: 242 THLKNTRYTLRPVLDILERLMIPLREKEEWGYIIPYMITGTLDEHPRSAMALRSSEDKDK 301 +L+N +Y +RPVLD++E+ MIPLREKEEWGYIIPYMITG LDEHPRSAMALR SEDKDK Sbjct: 244 ANLQNAKYNVRPVLDMIEKYMIPLREKEEWGYIIPYMITGMLDEHPRSAMALRDSEDKDK 303 Query: 302 AVEFYDKLTTPEV 314 V+FYD+LTTPEV Sbjct: 304 CVDFYDRLTTPEV 316 >A8EUX0.1 A8EUX0_ARCB4 HMGL family protein EC=4.1.3.- Length = 322 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 139/307 (45%), Positives = 195/307 (63%), Gaps = 5/307 (1%) Query: 7 KIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGAEGAGPWRF 66 K+ DCTIRDGGLVNN+ FS EFV+ Y AGVDYMEIG SP ++ AE GPW F Sbjct: 16 KVFDCTIRDGGLVNNYHFSDEFVKAHYETCLAAGVDYMEIGKNVSPTIMSEAE-YGPWNF 74 Query: 67 LNDDFLRKVIPQ-KGHTKLSALVDIGRVDENDILPRSESMLDLIRVACYSKDVDKALQLV 125 ++ +R+++ + K + K++ + DIGR + ++ P+SES++D+IR+A Y + A++L+ Sbjct: 75 CKEEDIRRIVGENKTNMKIAVMSDIGRSLKEELRPKSESVVDMIRIATYIHQIPAAIELI 134 Query: 126 QTFHDLGYETTINIMALSNVMENELLEAFEQIREXXXXXXXXXXXXGSLDHNDIHYLVDK 185 + H GYETT+NIMA+S ++EL E EQ+ + GS I L +K Sbjct: 135 EDAHAKGYETTVNIMAISKSFDDELDEVLEQLSKTNVDVIYIADSFGSFYPEQIKKLTEK 194 Query: 186 FQT--HLPNKRLGVHTHNNLQLAFSNTLLASEKGVELLDASCYGMGRAAGNCPTELLVTH 243 + + K++G+H HNNLQLA++NTL A G LD + G+GR AGNCP ELL+ Sbjct: 195 YLSFAQKTGKKVGIHAHNNLQLAYANTLEAMIYGTSFLDVTISGLGRGAGNCPLELLIGF 254 Query: 244 LKNTRYTLRPVLDILERLMIPLREKEEWGYIIPYMITGTLDEHPRSAMALRSSEDKDKAV 303 LKN +Y L PVL +E ++PL ++ +WGY IPYMITG L+EHPR+AM R +D K Sbjct: 255 LKNPKYKLTPVLKFIEEYIVPLEKELDWGYSIPYMITGQLNEHPRAAMKARDEKDT-KYR 313 Query: 304 EFYDKLT 310 EFY LT Sbjct: 314 EFYKSLT 320 >C4Z863.1 C4Z863_9FIRM HMGL family protein Length = 323 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 189/308 (61%), Gaps = 7/308 (2%) Query: 7 KIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGAEGAGPWRF 66 +++D TIRDGGLVNN+ F+ +F+ LY +AG+DYME GYK S +L G W+F Sbjct: 15 RVLDATIRDGGLVNNFMFTDDFINALYRANVKAGIDYMEFGYKASKELFD-VNKFGKWKF 73 Query: 67 LNDDFLRKVI-PQKGHTKLSALVDIGRVD-ENDILPRSESMLDLIRVACYSKDVDKALQL 124 ++ +R+++ K+S + D+GR D + DILPR +S++D++RVA Y + A+++ Sbjct: 74 CDEAAIREIVGDNNSDMKISVMADVGRCDYKKDILPREDSVIDMVRVATYVHQMPAAIEM 133 Query: 125 VQTFHDLGYETTINIMALSNVMENELLEAFEQIREXXXXXXXXXXXXGSLDHNDIHYLVD 184 ++ GYE T NIMA+SN E++L +A + + + G+L I + + Sbjct: 134 IEDAKSKGYEVTCNIMAISNTQESDLDQALDMVAKSSADGIYIVDSYGALYPEQIRRIAE 193 Query: 185 KFQ--THLPNKRLGVHTHNNLQLAFSNTLLASEKGVELLDASCYGMGRAAGNCPTELLVT 242 K+ K +G+H HNN QLAF+NT+ A+ +GV LLDA+ GMGR AGNC ELL++ Sbjct: 194 KYTEIAEANGKFVGMHAHNNQQLAFANTIEAAAQGVSLLDATMMGMGRGAGNCAMELLLS 253 Query: 243 HLKNTRYTLRPVLDILERLMIPLREKEE-WGYIIPYMITGTLDEHPRSAMALRSSEDKDK 301 LKN +Y + PVL +E M+PL+E WGY IPY++TG L++HP +A+ S + Sbjct: 254 FLKNPKYNVFPVLKFIEEHMLPLKESGAVWGYDIPYLLTGRLNQHPSAAIDYIKSGETHY 313 Query: 302 AVEFYDKL 309 A +FY L Sbjct: 314 A-DFYTDL 320 >C4Z4L3.1 C4Z4L3_9FIRM Putative uncharacterized protein Length = 326 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 128/313 (40%), Positives = 191/313 (61%), Gaps = 8/313 (2%) Query: 7 KIVDCTIRDGGLVNNWDFSVEFVQNLYAGLNEAGVDYMEIGYKNSPKLLKGAEGAGPWRF 66 K++DCT+RDGGLVNN++F+ EFV++LY AGVDYME GYK + E G W+F Sbjct: 16 KVMDCTLRDGGLVNNFEFTDEFVKDLYEANVAAGVDYMEFGYKADKDIFDEKE-FGKWKF 74 Query: 67 LNDDFLRKVIPQKGHT-KLSALVDIGRVD-ENDILPRSESMLDLIRVACYSKDVDKALQL 124 ++ +R ++ + K+S + D+GR + + DI P+SES++D++RVA Y + A+++ Sbjct: 75 CKEEDIRAIVGENDTPLKISVMADVGRTNMKRDIPPKSESVVDMVRVATYINTIPAAIEM 134 Query: 125 VQTFHDLGYETTINIMALSNVMENELLEAFEQI-REXXXXXXXXXXXXGSLDHNDIHYLV 183 D+GYE T+NIMA+S ENEL A E + + GSL + L Sbjct: 135 ANYCSDMGYEVTVNIMAISTAGENELDLALELLASQSKAQYIYLVDSYGSLYPEQVRRLA 194 Query: 184 DKFQ--THLPNKRLGVHTHNNLQLAFSNTLLASEKGVELLDASCYGMGRAAGNCPTELLV 241 DK+ K +G+H HNN QLAF+NT+ A GV LLDA+ GMGR AGNC +ELL+ Sbjct: 195 DKYIKIAEKYGKSVGIHAHNNQQLAFANTIEACSIGVSLLDATVSGMGRGAGNCYSELLL 254 Query: 242 THLKNTRYTLRPVLDILERLMIPLREKE-EWGYIIPYMITGTLDEHPRSAMALRSSEDKD 300 L+N ++ + PVL +E+ M+PL+ WG + YM+TG ++HPR+A+A +E D Sbjct: 255 GFLRNPKFNIVPVLKFIEKHMVPLKASGVVWGCDVQYMLTGQTNQHPRTAIAFTKAERTD 314 Query: 301 KAVEFYDKLTTPE 313 A ++Y ++T E Sbjct: 315 YA-KYYTEITGDE 326 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,808,356,826 Number of extensions: 72971102 Number of successful extensions: 179544 Number of sequences better than 1.0e-05: 380 Number of HSP's gapped: 179005 Number of HSP's successfully gapped: 380 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)