BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0078.p (367 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB29.1 B3KB29_9BACI Sensor protein EC=2.7.13.3 430 e-118 B1DIR5.1 B1DIR5_9BACL Sensor protein EC=2.7.13.3 385 e-105 Q2B807.1 Q2B807_9BACI Sensor protein EC=2.7.13.3 196 3e-48 A5D492.1 A5D492_PELTS Sensor protein EC=2.7.13.3 188 8e-46 A1HQD9.1 A1HQD9_9FIRM Sensor protein EC=2.7.13.3 183 2e-44 >B3KB29.1 B3KB29_9BACI Sensor protein EC=2.7.13.3 Length = 374 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/367 (58%), Positives = 282/367 (76%), Gaps = 3/367 (0%) Query: 1 VISQYQESLLLPARTFQSGPM-NTTYEDVLEHIDSGILLFDEEGVLTFVNKQMYGILGLN 59 ++SQ +ES L R+F S + YE++LE++DSGI+LFD +GVL FVN QM +LG++ Sbjct: 1 MLSQIRESELQAIRSFHSSQLIRNKYENILENLDSGIILFDSDGVLAFVNVQMAKLLGVS 60 Query: 60 RHSLLGCTLIHLLSNIQMNRFKKRQVLHGYREMMKKGKPSYEFVDEYGRYWKVSLHCGEH 119 R SL GCTL LL + Q++RFKK+++L +RE + + +E VDE+GR W +++ G+ Sbjct: 61 RKSLTGCTLTQLLRHPQLSRFKKKKILRIFRETVFHRRRFHELVDEFGRSWLITMTYGDQ 120 Query: 120 MKGSYLFTFKEISDYKLIEQTAYQNDSLAMLGKLSASIAHEIRNPLTAIRGFIQLLHPHL 179 M+G +L + K++SD+K IEQTAYQND LAMLGK+SASIAHEIRNPLT+IRGFIQLL PHL Sbjct: 121 MEGDFLISVKDVSDFKRIEQTAYQNDKLAMLGKISASIAHEIRNPLTSIRGFIQLLRPHL 180 Query: 180 HQLGKEEYAKIILAEIDRANDIIHEFLTSSKPSVPQVAMIPVSALLKEVVLLTESEALMK 239 LGK+EYA+IIL EIDRANDII+EFL SSKPS P+ ++ VS+LLKEVVLLTESEALMK Sbjct: 181 VSLGKDEYARIILTEIDRANDIIYEFLNSSKPSAPETKIVSVSSLLKEVVLLTESEALMK 240 Query: 240 GCEINFYPLQE-EMIISGDIKQMKQVVLNMIRNAMEAITDKIDDSM-GRIELGASREGAE 297 GC+IN + + IS D+KQ+KQV+LN+I+NA++AI + D+++ G I++ A G Sbjct: 241 GCQINLHTDKTPPAFISVDVKQIKQVILNIIKNALDAINEHHDENITGMIDISARDTGKH 300 Query: 298 VRIFISDNGKGMDICTLDRLFSPFFTTKENGTGLGLSVSDRIIKNHGGCISVSSRVNEGT 357 + I ISDNG GMD TL+ LF+PFFTTKE+GTGLGLSVS II+NHGG I+V S+V GT Sbjct: 301 INICISDNGGGMDQNTLNHLFNPFFTTKESGTGLGLSVSYSIIRNHGGTIAVDSQVGAGT 360 Query: 358 RFVISLP 364 FVI+ P Sbjct: 361 EFVITFP 367 >B1DIR5.1 B1DIR5_9BACL Sensor protein EC=2.7.13.3 Length = 459 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/367 (53%), Positives = 261/367 (71%), Gaps = 4/367 (1%) Query: 3 SQYQESLLLPARTFQSGPMNTTYEDVLEHIDSGILLFDEEGVLTFVNKQMYGILGLNRHS 62 S +E L L R+F+ + YE+VL+H+DSGI LFD +G+L+F+N +M +L + R + Sbjct: 95 SDMRERLFLSNRSFEM--VKHKYENVLQHMDSGIALFDSDGILSFINVRMAKLLDIPRKT 152 Query: 63 LLGCTLIHLLSNIQMNRFKKRQVLHGYREMMKKGKPSYEFVDEYGRYWKVSLHCGEHMKG 122 L+GC L +L + + R KR +L ++EM+ K YEF D+ G+Y VS G+ M G Sbjct: 153 LVGCNLREILLHPLLKRSTKRVILRLHKEMILKRNVYYEFQDKDGKYLLVSFTYGDQMNG 212 Query: 123 SYLFTFKEISDYKLIEQTAYQNDSLAMLGKLSASIAHEIRNPLTAIRGFIQLLHPHLHQL 182 +L + K++S+YK IEQTA QND LAMLG+++A+IAHEIRNPLT+IRGFIQLL P+L QL Sbjct: 213 DFLISVKDVSEYKQIEQTALQNDKLAMLGRIAAAIAHEIRNPLTSIRGFIQLLRPYLMQL 272 Query: 183 GKEEYAKIILAEIDRANDIIHEFLTSSKPSVPQVAMIPVSALLKEVVLLTESEALMKGCE 242 GKEEYA+IIL EIDRANDII EFL SSKPS P + ++ L++EV+LLTESEALM+ C+ Sbjct: 273 GKEEYARIILTEIDRANDIIFEFLNSSKPSAPMKKSVSINRLVQEVILLTESEALMRNCD 332 Query: 243 INF--YPLQEEMIISGDIKQMKQVVLNMIRNAMEAITDKIDDSMGRIELGASREGAEVRI 300 I Y + ++++S D+KQ+KQV+LN+++N+++AI + GRI+L +G I Sbjct: 333 IQLETYENERDLMVSIDVKQIKQVILNIVKNSIDAIESLQEARRGRIDLVVRSDGQFAEI 392 Query: 301 FISDNGKGMDICTLDRLFSPFFTTKENGTGLGLSVSDRIIKNHGGCISVSSRVNEGTRFV 360 + DNGKGMD TL RLF PFFTTKE GTGLGLSVS RII+NHGG I V S GT FV Sbjct: 393 TLKDNGKGMDKATLARLFDPFFTTKEAGTGLGLSVSYRIIRNHGGSIRVDSTEGSGTSFV 452 Query: 361 ISLPLIQ 367 I LPL + Sbjct: 453 IYLPLAE 459 >Q2B807.1 Q2B807_9BACI Sensor protein EC=2.7.13.3 Length = 282 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 150/234 (64%), Gaps = 9/234 (3%) Query: 139 QTAYQNDSLAM-------LGKLSASIAHEIRNPLTAIRGFIQLLHPHLHQLGKEEYAKII 191 QTA Q +A+ LGKL+A IAHEIRNPLT ++GF+QLL P L ++GKEEYA I Sbjct: 32 QTAEQVQEMAVAYEFQANLGKLAAGIAHEIRNPLTTVKGFLQLLKPQLREIGKEEYASIA 91 Query: 192 LAEIDRANDIIHEFLTSSKPSVPQVAMIPVSALLKEVVLLTESEALMKGCEINFYPLQEE 251 L EI RAN+II FL ++KPS ++ + ++ ++KE+V+L ESEA+++G + F P + Sbjct: 92 LGEISRANEIIGSFLNANKPSENKMKKVHINQIVKEIVMLYESEAVLRGSLLLFEPSPND 151 Query: 252 MIISGDIKQMKQVVLNMIRNAMEAITDKIDDSMGRIELGASREGAEVRIFISDNGKGMDI 311 ++ ++KQV+ N+ +NAMEA+T I G ++ I I DNG GM Sbjct: 152 PTMAAVPGELKQVLSNLFKNAMEAMT--IQSMAGSVQAKVECCSKHAVITIQDNGCGMSE 209 Query: 312 CTLDRLFSPFFTTKENGTGLGLSVSDRIIKNHGGCISVSSRVNEGTRFVISLPL 365 TL R++ PF+TTKE GTG+G+SV +I++ GG I +SSR EGT + LP+ Sbjct: 210 ETLQRIYEPFYTTKETGTGIGMSVCKKIVEELGGSIDISSRPGEGTAVKVILPI 263 >A5D492.1 A5D492_PELTS Sensor protein EC=2.7.13.3 Length = 349 Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 178/343 (51%), Gaps = 13/343 (3%) Query: 30 EHIDSGILLFDEEGVLTFVNKQMYGILGLNRHSLLGCTLIHLLSNIQMNRFKKRQVLHGY 89 E + G+L D EG + N+ + G+ GL + +L + + K Q L Sbjct: 14 EQMPLGLLAVDREGRVRVFNRVLSGLTGLRQDEVLERPFRKVFDCREPGLNKLLQTLATG 73 Query: 90 REMM----KKGKPSYEFVDEYGRYWKVSLHCGEHMKGSYLFTFKEISDYKLIEQTAYQND 145 RE + P+ E + +S G LF + +E + + Sbjct: 74 REFKDLQPRAIIPNLELANYTASTHAISGEGGRTAGAMALFL--PAGRLQELENAVIKAE 131 Query: 146 SLAMLGKLSASIAHEIRNPLTAIRGFIQLLHPHLHQLGKEEYAKIILAEIDRANDIIHEF 205 LA+LG+L+A + HEIRNPLT I GF+QLL L KE+Y IILAE+ N++I EF Sbjct: 132 RLAILGQLAAGMVHEIRNPLTVIGGFMQLLQKLLDGNPKEKYIHIILAELKHVNNLISEF 191 Query: 206 LTSSKPSVPQVAMIPVSALLKEVVLLTESEALMKGCEINFYPLQEEMIISGDIKQMKQVV 265 L +KP + A + L+K+VV+L ESEA ++ EI+ + GD +Q+KQV Sbjct: 192 LQLAKPGCSRRAPCSIEKLIKDVVMLVESEAYLRKLEIDLAVTGGIPPVMGDGEQLKQVF 251 Query: 266 LNMIRNAMEAITDKIDDSMGR--IELGASREGAEVRIFISDNGKGMDICTLDRLFSPFFT 323 LN I+N+ +A++ G+ +E R VRI DNG GMD TL +F+PFFT Sbjct: 252 LNFIKNSFDALSPG-----GKLVLETAWDRREGFVRIVFKDNGAGMDEETLKSIFNPFFT 306 Query: 324 TKENGTGLGLSVSDRIIKNHGGCISVSSRVNEGTRFVISLPLI 366 TKENGTGLG+ ++ +II NHGG I + S +GT + LP I Sbjct: 307 TKENGTGLGMFINKKIIDNHGGRIEIQSEQGKGTTVTVLLPAI 349 >A1HQD9.1 A1HQD9_9FIRM Sensor protein EC=2.7.13.3 Length = 542 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 141 AYQNDSLAMLGKLSASIAHEIRNPLTAIRGFIQLLHPHLHQLGKEEYAKIILAEIDRAND 200 A + + LA +G+L+A IAHEIRNPLT+++GFIQL+ + +Y +IIL EI+R Sbjct: 302 AVRLERLASVGQLAAGIAHEIRNPLTSVKGFIQLIMARGDRPVPRDYLEIILTEIERIEK 361 Query: 201 IIHEF-LTSSKPSVPQVAMIPVSALLKEVVLLTESEALMKGCEINFYPLQEEMIISGDIK 259 +I EF L + P PQ A++ + +L +VVLL ES+AL K + F P E++ + GD+ Sbjct: 362 LIREFHLLARPPQTPQFALLNLRVVLHDVVLLMESQALSKNVALEFMP-GEDVTVCGDVS 420 Query: 260 QMKQVVLNMIRNAMEAITDKIDDSMGRIELGASREGAEVRIFISDNGKGMDICTLDRLFS 319 Q+KQV +N++RNA+EA G +++ +G + ++DNG G+ L L + Sbjct: 421 QLKQVWINLLRNAIEAAPQG-----GSVDIALRADGNWAVVTVTDNGPGIPEDILPHLGT 475 Query: 320 PFFTTKENGTGLGLSVSDRIIKNHGGCISVSSRVNEGTRFVISLPL 365 PFFTTK++GTGLGLSV I++NHGG I V+SR EG F + LPL Sbjct: 476 PFFTTKQDGTGLGLSVCYSIVQNHGGNIRVNSRPGEGATFTVQLPL 521 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,067,907,935 Number of extensions: 85203833 Number of successful extensions: 326057 Number of sequences better than 1.0e-05: 26442 Number of HSP's gapped: 289495 Number of HSP's successfully gapped: 26509 Length of query: 367 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 230 Effective length of database: 1,770,017,148 Effective search space: 407103944040 Effective search space used: 407103944040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)