BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0069.p (382 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZK91.1 C0ZK91_BREBN Putative uncharacterized protein 334 9e-90 B1HY70.1 B1HY70_LYSSC Hypothetical response regulatory protein 282 4e-74 B3KAY6.1 B3KAY6_9BACI Response regulator receiver 278 5e-73 Q9KBB2.1 Q9KBB2_BACHD BH2016 protein 262 4e-68 C0Z9Z9.1 C0Z9Z9_BREBN Probable two-component response regulator 253 2e-65 >C0ZK91.1 C0ZK91_BREBN Putative uncharacterized protein Length = 383 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 172/381 (45%), Positives = 243/381 (63%), Gaps = 7/381 (1%) Query: 2 IQALLVDDERLAXXXXXXXXXXXXX-VNIMGSYTNPVEAVSAASQLQPDVIFLDIDMPEM 60 ++ALLVDDE+L V ++G+YTNP+EA+ A LQPDV+FLDI+MP + Sbjct: 1 MRALLVDDEQLPLMHLQRLLEKDVGGVKVVGAYTNPLEAIDQAISLQPDVVFLDINMPRI 60 Query: 61 NGVQVAEAMQSLCPGTSIVFVTAYNSYAVEAFELYALDYVLKPVRRDRLLKTIQRLEERF 120 +G+++ E +Q + IVFVT Y+ YAV+AFEL ALDY++KPV+ RL KT+ RL ER Sbjct: 61 SGLEIGERLQGIDNSPEIVFVTGYDKYAVDAFELCALDYIMKPVQLQRLQKTMDRLRERI 120 Query: 121 -GKEEGSVKKPEHEIMIRSFQSLRFERAGQPLPAIRWRTSKAQELFAYLFHNRNRFVSKD 179 +E + K E + I+ F S+ F + Q I+WRT+KA+ELFAYL H+RN+ + KD Sbjct: 121 KSAKEATPVKEESVVSIQCFNSILFHQPNQEPQEIKWRTNKARELFAYLLHHRNKMIDKD 180 Query: 180 SLIELLWPDFNLKRASTHLYTTIYQIRQSLKQADIGLQIGSASGGE---GYTMETGSMLI 236 SLIELLWPD++ + T LYTTIY IRQ+LK+ GL S + G GY + S I Sbjct: 181 SLIELLWPDYDGSKGVTQLYTTIYLIRQTLKR--YGLHTISINKGNLEGGYKLTIDSATI 238 Query: 237 DSYEWEKGILTLGPINAENCEKHQRLFYFYSGDYLNDYDYLWAESERQRLRTIWLHHAMG 296 D EWE + + P++ N +++++L Y+GDY DYDYLWAE ER+RLR +WL A Sbjct: 239 DVEEWENRLKQIPPLSLANMQEYEQLLAAYTGDYFGDYDYLWAEYERERLRRMWLSLAKT 298 Query: 297 MAEFFTAGGRIPEAVTVYQRVVQLQPYFEQGHLGLMKVYDSIGERSAIEEQYQYLADLLK 356 M+ F+ GR+ EA+ V QR+ L P E ++ LM++Y S+ + +A+EEQYQ L + Sbjct: 299 MSSFYLGHGRVREAINVNQRIQNLHPLEEDSYMILMQLYASLDDHAAVEEQYQLLTSRWE 358 Query: 357 RELGVDMPDNIKTWYEEWKQQ 377 ELG ++I WY WKQ+ Sbjct: 359 NELGSAANEHITKWYHIWKQE 379 >B1HY70.1 B1HY70_LYSSC Hypothetical response regulatory protein Length = 384 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 225/378 (59%), Gaps = 6/378 (1%) Query: 2 IQALLVDDERLAXXXXXXXXXXXXX--VNIMGSYTNPVEAVSAASQLQPDVIFLDIDMPE 59 ++ +LVDDE L+ + I+G YT+ ++ + LQP V+FLDI MP+ Sbjct: 1 MRIVLVDDEYLSLKRLKTLLEESHVPGIEIVGEYTDSLKVIEEIQNLQPSVVFLDIVMPD 60 Query: 60 MNGVQVAEAMQSLCPGTSIVFVTAYNSYAVEAFELYALDYVLKPVRRDRLLKTIQRLEER 119 M+G+ + E +Q L P IVF T ++ YA++AF L+A+DY+LKP++ RL KT+ RLE+ Sbjct: 61 MDGLALGEKIQELLPDVEIVFTTGFDQYALDAFNLHAVDYLLKPIQITRLEKTLDRLEQI 120 Query: 120 FGKEEGSVKKPEHEIMIRSFQSLRFERAGQPLPAIRWRTSKAQELFAYLFHNRNRFVSKD 179 K + K+ + +I F L+ ++WRTSKA+ELFAYL ++R+ + +D Sbjct: 121 NNKHK---KRVVNSTIISLFGGLQVISPDGHTQILKWRTSKAKELFAYLLNHRDEIIYRD 177 Query: 180 SLIELLWPDFNLKRASTHLYTTIYQIRQSLKQADI-GLQIGSASGGEGYTMETGSMLIDS 238 +++EL WP+ + +AS LYT +Y IRQ+LK + G+QI S GY + ++D Sbjct: 178 TILELFWPESDRDKASKQLYTAVYTIRQTLKNYGLDGVQISSPLLNSGYKLLLEQTIVDV 237 Query: 239 YEWEKGILTLGPINAENCEKHQRLFYFYSGDYLNDYDYLWAESERQRLRTIWLHHAMGMA 298 +W + +L + EN E+H+++F Y+GDYL D DYLWAESER+RLR +WLHHA ++ Sbjct: 238 EQWLSSLKSLPTLEQENVEEHEQVFQMYTGDYLEDCDYLWAESERERLRRLWLHHAHQLS 297 Query: 299 EFFTAGGRIPEAVTVYQRVVQLQPYFEQGHLGLMKVYDSIGERSAIEEQYQYLADLLKRE 358 EF+ A+ V + V L E+ + LMK+YD + +A+EEQY L L+ Sbjct: 298 EFYIKIENYSAAIKVQETVQALFAGEEENYFTLMKLYDLLNNVAAVEEQYLLLKKALQEH 357 Query: 359 LGVDMPDNIKTWYEEWKQ 376 V+ + I+ WY+ WK+ Sbjct: 358 FAVEPSEEIENWYKRWKK 375 >B3KAY6.1 B3KAY6_9BACI Response regulator receiver Length = 385 Score = 278 bits (712), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 218/377 (57%), Gaps = 6/377 (1%) Query: 2 IQALLVDDERLAXX--XXXXXXXXXXXVNIMGSYTNPVEAVSAASQLQPDVIFLDIDMPE 59 ++ +LVDDE LA ++++G+YTNP E D++FLDI +PE Sbjct: 1 MKVILVDDEPLALKYLERQLLKLDTMPIDVIGTYTNPFEGRKEILARDVDIVFLDISLPE 60 Query: 60 MNGVQVAEAMQSLCPGTSIVFVTAYNSYAVEAFELYALDYVLKPVRRDRLLKTIQRLEER 119 +NG+++AE + P IVFVT Y+ YAV AFEL A+DY++KPV+ DR+ KT++RL R Sbjct: 61 LNGIELAEQLLEQKPHLCIVFVTGYHEYAVTAFELNAVDYIVKPVQIDRVAKTMERLRSR 120 Query: 120 FGKEEGSVKKPEHEIMIRSFQSLRFERAGQP--LPAIRWRTSKAQELFAYLFHNRNRFVS 177 V P +I + F+ + E+ + + WRT++AQE+F YL +R + V Sbjct: 121 IASRPEEVLNPNRKIRMTMFRQVMIEQPNEQGQFAMLHWRTTRAQEIFIYLLQHRGQLVR 180 Query: 178 KDSLIELLWPDFNLKRASTHLYTTIYQIRQSLKQADIGLQIGSASGGEGYTMETGSMLID 237 K +LI++LWP+F++ +A LYT IY IR++L+ D QI + + EGY + + +D Sbjct: 181 KSALIDMLWPEFDMDKAYPQLYTAIYHIRKTLEPYDTRFQITNTT--EGYVLNVEDVQLD 238 Query: 238 SYEWEKGILTLGPINAENCEKHQRLFYFYSGDYLNDYDYLWAESERQRLRTIWLHHAMGM 297 EWE ++A++ + H + Y+GDYL +YDY WAE ERQRL+ +WL ++ M Sbjct: 239 IEEWENWFTANPSVSADSIDGHLEMMKLYTGDYLQEYDYWWAEGERQRLKELWLSVSLSM 298 Query: 298 AEFFTAGGRIPEAVTVYQRVVQLQPYFEQGHLGLMKVYDSIGERSAIEEQYQYLADLLKR 357 AE++ R EAV + + +L P E+ + LMK+Y G + + Q+ L +LK Sbjct: 299 AEWYVDQERFEEAVLCFASIQRLHPLEEKAYFSLMKIYGLQGNPAQVHRQFSLLRQVLKD 358 Query: 358 ELGVDMPDNIKTWYEEW 374 E+G + IK WY+EW Sbjct: 359 EMGEEPSPYIKKWYDEW 375 >Q9KBB2.1 Q9KBB2_BACHD BH2016 protein Length = 337 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 137/339 (40%), Positives = 208/339 (61%), Gaps = 12/339 (3%) Query: 45 QLQPDVIFLDIDMPEMNGVQVAEAMQSLCPGTSIVFVTAYNSYAVEAFELYALDYVLKPV 104 Q +PD+IFLDI++P++NG+ AE +QS+ P IVF+TAY+ YAV+AFEL A+DYV+KPV Sbjct: 3 QHKPDLIFLDINLPDINGIDFAEQVQSILPEVHIVFITAYDEYAVKAFELNAIDYVMKPV 62 Query: 105 RRDRLLKTIQRLEERFGKEEGSVKKPEHEIMIRSFQSLRFERA---GQPLPA-IRWRTSK 160 +RDRL +TI R+ +R K ++ +I FQ+L F++ G+ P + WRT+K Sbjct: 63 QRDRLNRTINRITDR--KTVEPLRSQTDSKIISCFQTLHFQKGSEIGKAEPIDVNWRTAK 120 Query: 161 AQELFAYLFHNRNRFVSKDSLIELLWPDFNLKRASTHLYTTIYQIRQSLKQADIGLQIGS 220 A+ELFAYL +R + V KD L+E WP+ ++K+ LY+ IYQIR+ L LQ+ S Sbjct: 121 ARELFAYLVQHRKQPVRKDVLLEFFWPESDVKKGYAQLYSAIYQIRKMLD----SLQMNS 176 Query: 221 A--SGGEGYTMETGSMLIDSYEWEKGILTLGPINAENCEKHQRLFYFYSGDYLNDYDYLW 278 S + Y + +D EWE+ + L I + ++RL Y GDYL + YLW Sbjct: 177 TVVSFDKSYKLHLNGTKLDVEEWERELRQLPNITEDTLPSYRRLLETYKGDYLAEEAYLW 236 Query: 279 AESERQRLRTIWLHHAMGMAEFFTAGGRIPEAVTVYQRVVQLQPYFEQGHLGLMKVYDSI 338 AE+ER+RLRT++ + ++ G +A+T+ QRV L P E + LM+VY + Sbjct: 237 AENERERLRTLYHSTFNKVTTYYLECGYYTDAITLCQRVQTLHPLMETSYFLLMQVYAKM 296 Query: 339 GERSAIEEQYQYLADLLKRELGVDMPDNIKTWYEEWKQQ 377 G+ +++ QY+ L +L+ E G+ D+I+ WY EWK+Q Sbjct: 297 GDNHSVKSQYEKLNHVLEAEYGIHTSDSIENWYNEWKKQ 335 >C0Z9Z9.1 C0Z9Z9_BREBN Probable two-component response regulator Length = 376 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 219/377 (58%), Gaps = 3/377 (0%) Query: 2 IQALLVDDERLAXXXXXXXXXXXXXVNIMGSYTNPVEAVSAASQLQPDVIFLDIDMPEMN 61 ++A+L+DDE LA I+G +T+P+ + + D++FLDI P++N Sbjct: 1 MKAILIDDEELALNYLEHQLLNIGDFEIVGKFTDPMIGKREIEKKEIDIVFLDIQTPKLN 60 Query: 62 GVQVAEAMQSLCPGTSIVFVTAYNSYAVEAFELYALDYVLKPVRRDRLLKTIQRLEERFG 121 G+++AE + + P IVFVTAY YA++AFEL ALDYVLKPV + RL T++R++ Sbjct: 61 GIELAEQLLEVKPQLQIVFVTAYERYAIKAFELNALDYVLKPVGKKRLQNTMKRIQSMME 120 Query: 122 KEEGSVKKPEHEIMIRSFQSLRFERAGQPLPAIRWRTSKAQELFAYLFHNRNRFVSKDSL 181 + + + + + FQ + F GQ +P +RWRT+K Q+LF YL +R V+K ++ Sbjct: 121 EHKTFSPQKSENLQMSLFQQVTFVDGGQEIP-LRWRTAKVQQLFLYLVQHRGTTVNKTAI 179 Query: 182 IELLWPDFNLKRASTHLYTTIYQIRQSLKQADIGLQIGSASGGEGYTMETGSMLIDSYEW 241 IELLWP+ ++A+ LYT IY IR++L QI + S EGY ++ ++D ++ Sbjct: 180 IELLWPELEPEKANHQLYTAIYHIRKTLAPFSKYFQISNTS--EGYKVKLEQTILDVDQF 237 Query: 242 EKGILTLGPINAENCEKHQRLFYFYSGDYLNDYDYLWAESERQRLRTIWLHHAMGMAEFF 301 E+ + + AE +++++ GDYL +++Y+WAESERQRL+ W+ A+ M +++ Sbjct: 238 ERFFRSDLSLTAETIDEYEQAMALCKGDYLQEHNYIWAESERQRLQLQWVQTALKMVDWY 297 Query: 302 TAGGRIPEAVTVYQRVVQLQPYFEQGHLGLMKVYDSIGERSAIEEQYQYLADLLKRELGV 361 A +A+T+ + Q P E+ + LMK++ G S++ +QY +L +L EL Sbjct: 298 YANDEWDKAITLCLDICQRYPLEEEAYFFLMKIFADTGRHSSVHKQYDHLTSVLWNELQE 357 Query: 362 DMPDNIKTWYEEWKQQH 378 I WY+ WKQ++ Sbjct: 358 QPNPAITEWYQLWKQKN 374 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,193,167,515 Number of extensions: 88364972 Number of successful extensions: 291065 Number of sequences better than 1.0e-05: 3071 Number of HSP's gapped: 300306 Number of HSP's successfully gapped: 3071 Length of query: 382 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 245 Effective length of database: 1,770,017,148 Effective search space: 433654201260 Effective search space used: 433654201260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)