BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0065.p (162 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB21.1 B3KB21_9BACI Acetolactate synthase, small subunit 289 7e-77 B1DL48.1 B1DL48_9BACL Acetolactate synthase, small subunit 273 5e-72 B1DI52.1 B1DI52_9BACL Acetolactate synthase, small subunit 205 1e-51 C0Z9C6.1 C0Z9C6_BREBN Acetolactate synthase small subunit EC=2.2... 200 3e-50 Q12Y02.1 Q12Y02_METBU Acetolactate synthase, small subunit EC=2.... 188 1e-46 >B3KB21.1 B3KB21_9BACI Acetolactate synthase, small subunit Length = 161 Score = 289 bits (739), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 143/158 (90%), Positives = 152/158 (96%) Query: 5 RHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQIE 64 +HTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEE GLSRMVIVT GD+ TLEQ+E Sbjct: 4 KHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEIGLSRMVIVTTGDETTLEQVE 63 Query: 65 KQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSLL 124 KQLYKLIDVIKV++L SKPMVARELALIKVKAEP+ RPEIMGVVETFRASVVDIGTT+L+ Sbjct: 64 KQLYKLIDVIKVINLSSKPMVARELALIKVKAEPSARPEIMGVVETFRASVVDIGTTNLM 123 Query: 125 VQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGNA 162 VQVVGDT KIDAMIELLKPYGI+ELSRTGVTAMIRGNA Sbjct: 124 VQVVGDTVKIDAMIELLKPYGIQELSRTGVTAMIRGNA 161 >B1DL48.1 B1DL48_9BACL Acetolactate synthase, small subunit Length = 161 Score = 273 bits (697), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 132/157 (84%), Positives = 146/157 (92%) Query: 5 RHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQIE 64 +HTIAV+VNDQPGVLQRVSGLFGRRGFNIESITVG SEE GLSRMVIVT GD HTLEQI Sbjct: 3 KHTIAVIVNDQPGVLQRVSGLFGRRGFNIESITVGASEEQGLSRMVIVTTGDDHTLEQIT 62 Query: 65 KQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSLL 124 KQLYKLIDVIKV+DL S PMV+RELALIKV AEP+ RPEI+GVV+TFRA+VVDIGT SL+ Sbjct: 63 KQLYKLIDVIKVIDLSSNPMVSRELALIKVSAEPSARPEILGVVDTFRAAVVDIGTHSLI 122 Query: 125 VQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGN 161 VQV+GDT+KIDAM+ELLKPYGI+ELSRTGVTA+ RGN Sbjct: 123 VQVIGDTEKIDAMVELLKPYGIRELSRTGVTALNRGN 159 >B1DI52.1 B1DI52_9BACL Acetolactate synthase, small subunit Length = 158 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/156 (64%), Positives = 126/156 (80%) Query: 5 RHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQIE 64 R T AVLVN+ PGVLQRV+GLF RRGFNI+SITVGQSE LSRM+I T GD +TLEQ++ Sbjct: 3 RCTFAVLVNNHPGVLQRVTGLFTRRGFNIDSITVGQSETPELSRMIIATYGDDNTLEQVK 62 Query: 65 KQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSLL 124 KQL KLIDV+++V+L + PMV RELALIKV P I+ +V+ FRAS+VDIG+ +++ Sbjct: 63 KQLNKLIDVVQIVELSAFPMVDRELALIKVSNVNKADPAILSIVKPFRASIVDIGSENVV 122 Query: 125 VQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRG 160 +QVVGD +KI++ I LLKPYGI EL+RTG+TAMIR Sbjct: 123 IQVVGDQEKINSFIALLKPYGILELTRTGMTAMIRS 158 >C0Z9C6.1 C0Z9C6_BREBN Acetolactate synthase small subunit EC=2.2.1.6 Length = 168 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 97/155 (62%), Positives = 124/155 (80%) Query: 5 RHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQIE 64 +HTI+VLVNDQPGVL RV+ LFG+RGFNI+SITVG +EE GLSRM+I T GD + Q+ Sbjct: 3 QHTISVLVNDQPGVLTRVATLFGQRGFNIDSITVGGTEEQGLSRMIISTGGDDRQINQLM 62 Query: 65 KQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSLL 124 KQL+KLIDVI V +L P V+RELALIKV A P++ E+ G+VE FRA++VD+G +SL+ Sbjct: 63 KQLHKLIDVISVTNLSENPFVSRELALIKVTASPSQLAELNGIVEPFRAAIVDVGPSSLI 122 Query: 125 VQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIR 159 VQV GDT+KIDA++ LL+ YG+ EL+RTG AM R Sbjct: 123 VQVTGDTEKIDALLVLLQSYGVIELTRTGSVAMAR 157 >Q12Y02.1 Q12Y02_METBU Acetolactate synthase, small subunit EC=2.2.1.6 Length = 161 Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/158 (56%), Positives = 119/158 (75%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 MRHT+AVLV ++ GVL RV+GLF RRGFNI+S+ VG +E+ LSRM I+ GD H LEQ+ Sbjct: 1 MRHTLAVLVENKYGVLARVAGLFSRRGFNIDSLAVGTTEDPTLSRMTIIVSGDDHVLEQV 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 KQL KLIDVI+V+DL S+ V RELALIKV + + R EI+ +V FRA +D+ + SL Sbjct: 61 MKQLNKLIDVIRVIDLSSEEFVERELALIKVNTDASNRAEIIQIVNIFRARTIDVASKSL 120 Query: 124 LVQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGN 161 ++V GD +KI A+ LLKP+GIKEL+RTG+ A+ RG+ Sbjct: 121 TIEVTGDVEKIKAIQTLLKPFGIKELARTGIVALNRGS 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 826,711,960 Number of extensions: 29200732 Number of successful extensions: 93619 Number of sequences better than 1.0e-05: 1356 Number of HSP's gapped: 93015 Number of HSP's successfully gapped: 1388 Length of query: 162 Length of database: 3,060,696,203 Length adjustment: 122 Effective length of query: 40 Effective length of database: 1,911,332,373 Effective search space: 76453294920 Effective search space used: 76453294920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)