BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0062.p
         (110 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB18.1 B3KB18_9BACI Putative uncharacterized protein                 85   2e-15
B1DL50.1 B1DL50_9BACL Putative uncharacterized protein                 71   4e-11

>B3KB18.1 B3KB18_9BACI Putative uncharacterized protein
          Length = 114

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 1  MAQPVTKKQVMKLVGKNIVAVKKDGTKVSGKLLRVSGNRLVLQRVS-GKKVQTKALIPLV 59
          M +PV+K +V   VGK IVA KK+GT V+GKL+RVSGNRL ++  + GKKV+TKA+IPL 
Sbjct: 1  MHKPVSKAKVKSYVGKEIVAYKKNGTVVTGKLVRVSGNRLYVEPATKGKKVKTKAIIPLA 60

Query: 60 LFDLLAVGT 68
          LFDLLA+GT
Sbjct: 61 LFDLLAIGT 69


>B1DL50.1 B1DL50_9BACL Putative uncharacterized protein
          Length = 135

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 3/67 (4%)

Query: 5  VTKKQVMKLVGKNIVAVKKDGTKVSGKLLRVSGNRLV---LQRVSGKKVQTKALIPLVLF 61
          V+K QV KLVGK I AV+KDG+ V+GKL+ +  N+LV   L++  GK V+TKA++PLVLF
Sbjct: 7  VSKAQVKKLVGKPIYAVRKDGSVVTGKLVELRQNKLVLAPLKKEKGKVVRTKAILPLVLF 66

Query: 62 DLLAVGT 68
          DLLA+GT
Sbjct: 67 DLLAIGT 73


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.139    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 347,977,204
Number of extensions: 9420371
Number of successful extensions: 25948
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 25946
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 33
Effective length of database: 2,335,278,048
Effective search space: 77064175584
Effective search space used: 77064175584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)