BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0060.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIE5.1 B1DIE5_9BACL Inner-membrane translocator 311 4e-83 C0ZF26.1 C0ZF26_BREBN ABC transporter permease protein 300 7e-80 Q2B0G7.1 Q2B0G7_9BACI Sugar ABC transporter (Permease) 257 8e-67 Q5L0G5.1 Q5L0G5_GEOKA Sugar ABC transporter (Permease) 250 1e-64 C3J5D1.1 C3J5D1_9BACI Inner-membrane translocator 250 1e-64 >B1DIE5.1 B1DIE5_9BACL Inner-membrane translocator Length = 320 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 163/284 (57%), Positives = 203/284 (71%), Gaps = 1/284 (0%) Query: 1 VNIGLEGLMMXXXXXXXXXXXXXQDAGMGDWAPWIGVLCAMVVGVLGALIHAVASITFKA 60 VNIGLEGLM+ GM APWIG+L +V+G++ +L+HAVA+ITFKA Sbjct: 37 VNIGLEGLMIAGAFGAAVFADQAIQGGMKHGAPWIGLLAGLVLGLVVSLLHAVATITFKA 96 Query: 61 DQTISGTVINFLAAGSTLYVVKLIFEGAGETPLLDG-FNKVAIPGLSKIPVIGEGIFNSY 119 DQTI G VIN LAAG +Y+ K ++EG+G+TP L+ FN VAIPGLS IP++G+GIF +Y Sbjct: 97 DQTIVGVVINILAAGLAIYLTKSLYEGSGQTPTLEYVFNPVAIPGLSDIPLLGKGIFTAY 156 Query: 120 PTTXXXXXXXXXXXXXXXKTPFGLRLRSVGEHPSAADTLGVNVNRMRYIGVMLSXXXXXX 179 PTT +T FGLRLR+VGEHPS+ADT+G++V + RYIGVMLS Sbjct: 157 PTTYIVIGVVILSYIVLYRTTFGLRLRAVGEHPSSADTVGISVTKYRYIGVMLSGALAGL 216 Query: 180 XXXXXXXXXXXXFAHNTVSGQGFIAIAAMIFGKWNPLGAFGAAVFFGLSQAIRNYVQLFE 239 FAHNT+SGQGFIAIAA+IFGKWNPLG GAA+FFG++QA+RN+ QLFE Sbjct: 217 GGATIALTTTSNFAHNTISGQGFIAIAAVIFGKWNPLGVAGAAIFFGMAQALRNWAQLFE 276 Query: 240 WSKDIPQEFIFMIPYVLTIIVLVSAVGRSSAPKALGEPYDPSKR 283 WS IP EF +M+PY+LT+IVL AVGRS+AP ALGEPYDP+KR Sbjct: 277 WSHHIPNEFFYMLPYLLTLIVLAGAVGRSAAPGALGEPYDPAKR 320 >C0ZF26.1 C0ZF26_BREBN ABC transporter permease protein Length = 319 Score = 300 bits (769), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 157/284 (55%), Positives = 194/284 (68%), Gaps = 2/284 (0%) Query: 1 VNIGLEGLMMXXXXXXXXXXXXXQDAGMGDWAPWIGVLCAMVVGVLGALIHAVASITFKA 60 VNI LEG+M+ QD+ G WAPW+G + A + G + AL HAVAS+TFKA Sbjct: 37 VNIALEGMMIIGAFTGAVMTYAFQDS-FGAWAPWVGFIAAGIAGAIFALPHAVASVTFKA 95 Query: 61 DQTISGTVINFLAAGSTLYVVKLIFEGAGETPLLDG-FNKVAIPGLSKIPVIGEGIFNSY 119 DQT+SG +NFLAAG ++Y+ K+IF GAG+T L FNK +IPGLS+IP IG IF +Y Sbjct: 96 DQTVSGVALNFLAAGLSIYLTKIIFNGAGQTTTLTSVFNKFSIPGLSEIPYIGHAIFEAY 155 Query: 120 PTTXXXXXXXXXXXXXXXKTPFGLRLRSVGEHPSAADTLGVNVNRMRYIGVMLSXXXXXX 179 PT+ KTPFGLRLRSVGEHP AADT+G+NV RMRY VM+S Sbjct: 156 PTSYLAFIAVFVTWYVIFKTPFGLRLRSVGEHPRAADTVGINVKRMRYTAVMISGLLAAL 215 Query: 180 XXXXXXXXXXXXFAHNTVSGQGFIAIAAMIFGKWNPLGAFGAAVFFGLSQAIRNYVQLFE 239 F+HNTVSGQGFIAIAA+IFGKW+P+GA GAA+FFG++QAI++ VQ+F Sbjct: 216 GGATISLTTTSNFSHNTVSGQGFIAIAALIFGKWHPMGAMGAALFFGVAQAIKSLVQIFG 275 Query: 240 WSKDIPQEFIFMIPYVLTIIVLVSAVGRSSAPKALGEPYDPSKR 283 + IP EFIFM+PYVLTI+V+ VGRSSAP ALG+PYD R Sbjct: 276 LTNYIPTEFIFMLPYVLTILVMAGLVGRSSAPAALGKPYDTGSR 319 >Q2B0G7.1 Q2B0G7_9BACI Sugar ABC transporter (Permease) Length = 319 Score = 257 bits (657), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 141/285 (49%), Positives = 183/285 (64%), Gaps = 4/285 (1%) Query: 1 VNIGLEGLMMXXXXXXXXXXXXXQDAGMGDWAPWIGVLCAMVVGVLGALIHAVASITFKA 60 VNIGLEGLM+ D+ +G PW+ ++ A+VVG L ALIHAVASITF+A Sbjct: 37 VNIGLEGLMVIGAFTAIVFNLTFVDS-LGKATPWLALVAALVVGGLFALIHAVASITFRA 95 Query: 61 DQTISGTVINFLAAGSTLYVVKLIFEGAGETPLLD-GFNKVAIPGLSKIPVIGEGIF-NS 118 DQT+SG IN LA G L++VK I++ G+T ++ GF+KV IP LS IP+IGE +F N+ Sbjct: 96 DQTVSGVAINLLAIGLALFLVKFIYD-KGQTDIIQVGFSKVDIPLLSDIPIIGEILFSNT 154 Query: 119 YPTTXXXXXXXXXXXXXXXKTPFGLRLRSVGEHPSAADTLGVNVNRMRYIGVMLSXXXXX 178 Y T+ KTPFGLRLRSVGEHP AADT+G+NV RMRYIGV++S Sbjct: 155 YYTSFVAIIIAFIAWYVMFKTPFGLRLRSVGEHPMAADTMGINVTRMRYIGVVISGALAG 214 Query: 179 XXXXXXXXXXXXXFAHNTVSGQGFIAIAAMIFGKWNPLGAFGAAVFFGLSQAIRNYVQLF 238 F H T+SGQGF+A+AA+IFGKW+PLGA GAA+FFG +Q++ Sbjct: 215 VGGGVYAQSISSDFGHATISGQGFMALAALIFGKWHPLGAMGAALFFGFAQSLSIVGSSL 274 Query: 239 EWSKDIPQEFIFMIPYVLTIIVLVSAVGRSSAPKALGEPYDPSKR 283 ++IP ++ + PYVLTI+ L +GR+ APKALG PY KR Sbjct: 275 PLLENIPNVYLLIAPYVLTILALTGFIGRADAPKALGTPYIKGKR 319 >Q5L0G5.1 Q5L0G5_GEOKA Sugar ABC transporter (Permease) Length = 319 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/285 (46%), Positives = 180/285 (63%), Gaps = 4/285 (1%) Query: 1 VNIGLEGLMMXXXXXXXXXXXXXQDAGMGDWAPWIGVLCAMVVGVLGALIHAVASITFKA 60 VNIGLEGLM D G+W PW+ +L AMVVG + +L+HAVAS+TF+A Sbjct: 37 VNIGLEGLMTIGAFVGIVFNLTFADR-FGEWTPWLALLAAMVVGAVFSLLHAVASVTFRA 95 Query: 61 DQTISGTVINFLAAGSTLYVVKLIFEGAGETPLLD-GFNKVAIPGLSKIPVIGEGIF-NS 118 DQ +SG INFLA G +L++VK ++ G G+T + GF+K+ +P LS IPVIG +F N+ Sbjct: 96 DQVVSGVAINFLALGLSLFLVKKMY-GKGQTDQIQVGFDKIDVPVLSDIPVIGPLLFSNA 154 Query: 119 YPTTXXXXXXXXXXXXXXXKTPFGLRLRSVGEHPSAADTLGVNVNRMRYIGVMLSXXXXX 178 Y + KTPFGLRLR+VGEHP AADT+G++V +MRYI VM+S Sbjct: 155 YAPSYIAIALAFVSWYVIYKTPFGLRLRAVGEHPMAADTMGIHVAKMRYIAVMISGALGG 214 Query: 179 XXXXXXXXXXXXXFAHNTVSGQGFIAIAAMIFGKWNPLGAFGAAVFFGLSQAIRNYVQLF 238 F+H T+SG GF+A+AAMIFGKW+P+GA GAA+FFGL+Q++ Q Sbjct: 215 LGGAVYATIISRDFSHATISGHGFMALAAMIFGKWHPIGAMGAALFFGLAQSLSIVGQTI 274 Query: 239 EWSKDIPQEFIFMIPYVLTIIVLVSAVGRSSAPKALGEPYDPSKR 283 + K++P ++ + PY LTI+ L +GR+ APKA G PY KR Sbjct: 275 PFLKNVPTVYLLIAPYALTILALAGFIGRAEAPKAAGTPYIKGKR 319 >C3J5D1.1 C3J5D1_9BACI Inner-membrane translocator Length = 319 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/285 (46%), Positives = 180/285 (63%), Gaps = 4/285 (1%) Query: 1 VNIGLEGLMMXXXXXXXXXXXXXQDAGMGDWAPWIGVLCAMVVGVLGALIHAVASITFKA 60 VNIGLEGLM D G+W PW+ +L AMVVG + +L+HAVAS+TF+A Sbjct: 37 VNIGLEGLMTIGAFVGIVFNLTFADR-FGEWTPWLALLAAMVVGAVFSLLHAVASVTFRA 95 Query: 61 DQTISGTVINFLAAGSTLYVVKLIFEGAGETPLLD-GFNKVAIPGLSKIPVIGEGIF-NS 118 DQ +SG INFLA G +L++VK ++ G G+T + GF+K+ +P LS IPVIG +F N+ Sbjct: 96 DQVVSGVAINFLALGLSLFLVKKMY-GKGQTDQIQVGFDKIDVPVLSDIPVIGPLLFSNA 154 Query: 119 YPTTXXXXXXXXXXXXXXXKTPFGLRLRSVGEHPSAADTLGVNVNRMRYIGVMLSXXXXX 178 Y + KTPFGLRLR+VGEHP AADT+G++V +MRYI VM+S Sbjct: 155 YAPSYIAIALAFVSWYVIYKTPFGLRLRAVGEHPMAADTMGIHVAKMRYIAVMISGALGG 214 Query: 179 XXXXXXXXXXXXXFAHNTVSGQGFIAIAAMIFGKWNPLGAFGAAVFFGLSQAIRNYVQLF 238 F+H T+SG GF+A+AAMIFGKW+P+GA GAA+FFGL+Q++ Q Sbjct: 215 LGGAVYATIISRDFSHATISGHGFMALAAMIFGKWHPIGAMGAALFFGLAQSLSIVGQTI 274 Query: 239 EWSKDIPQEFIFMIPYVLTIIVLVSAVGRSSAPKALGEPYDPSKR 283 + K++P ++ + PY LTI+ L +GR+ APKA G PY KR Sbjct: 275 PFLKNVPTVYLLIAPYALTILALAGFIGRAEAPKAAGTPYIKGKR 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,411,707,688 Number of extensions: 51190667 Number of successful extensions: 120511 Number of sequences better than 1.0e-05: 937 Number of HSP's gapped: 117876 Number of HSP's successfully gapped: 951 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)