BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0059.p (337 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZF27.1 C0ZF27_BREBN ABC transporter permease protein 381 e-104 C3BNG7.1 C3BNG7_9BACI Branched-chain amino acid transport system... 268 5e-70 C3BCC4.1 C3BCC4_BACMY Branched-chain amino acid transport system... 268 5e-70 C3AP61.1 C3AP61_BACMY Branched-chain amino acid transport system... 268 5e-70 B7GG53.1 B7GG53_ANOFW ABC-type uncharacterized transport system,... 263 1e-68 >C0ZF27.1 C0ZF27_BREBN ABC transporter permease protein Length = 357 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/335 (55%), Positives = 245/335 (73%), Gaps = 4/335 (1%) Query: 1 MGFLVGAIVMLVGGYDPIAAYSALFKRVFGTPYDFGEAIREMTPLMFTGLAVAFAFRSGM 60 +G L GAI ML GG+DPIAAY+AL K+VFG+ Y+FGE IR++TPL+FTGLAVAFAFR+G+ Sbjct: 22 LGLLTGAIAMLAGGFDPIAAYTALIKKVFGSAYNFGETIRQITPLIFTGLAVAFAFRTGL 81 Query: 61 FNIGADGQVLIGMTAASVVGIKFAGTLPSFVLVPLAVIIAGVCGGLWAGIAGYLKAKRGI 120 FNIGA+GQ ++GM A++VVG+ F LP+ + PLA++ + GGLW IAGYLKA RG+ Sbjct: 82 FNIGAEGQFIVGMIASTVVGVSF--DLPAIIHAPLAILAGALAGGLWGAIAGYLKAARGV 139 Query: 121 NEVITTIMLNWVALFLSNYIVRSFLLLQGQNRSEDIPAS--LSMTFLNSVFDNARLHWGT 178 NEVIT+IMLNWVAL+ +N+I+ +F + G+ SE++ S +++ +L +FDNARLHWGT Sbjct: 140 NEVITSIMLNWVALYFANWIMNAFFIPAGKQTSEEVKDSAIITIGWLAEMFDNARLHWGT 199 Query: 179 VIALAAAVFFYVYLWKTKQGYEMRAVGLNPHAAEYAGMNVGRNVMKAMFISXXXXXXXXX 238 +IA+ AA+FFY+ LWKTK G+E+R+VGLNPHA+EYAGMNV RNV+KAMFI Sbjct: 200 LIAVLAAIFFYIILWKTKSGFELRSVGLNPHASEYAGMNVNRNVVKAMFIGGMFAGIGGA 259 Query: 239 XXXXXXXHYQSVFAASPGYGFDGIAVALLGLTHPLGVILAAILYGTLTYGSAGMSFGADV 298 HYQ++ GYGFDGIAVAL+G P GVILAAIL+G LT+G++GM F A V Sbjct: 260 TEILGVFHYQAIMTQHTGYGFDGIAVALIGGNTPFGVILAAILFGVLTFGASGMQFSAGV 319 Query: 299 PPELXXXXXXXXXXXXAAQGIVRWVLKPFYFKRKK 333 P EL AA GIV+ +KP K+K+ Sbjct: 320 PFELIRVVIASVIFFVAAHGIVKIFVKPILMKKKE 354 >C3BNG7.1 C3BNG7_9BACI Branched-chain amino acid transport system, permease Length = 329 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/323 (45%), Positives = 206/323 (63%), Gaps = 5/323 (1%) Query: 4 LVGAIVMLVGGYDPIAAYSALFKRVFGTPYDFGEAIREMTPLMFTGLAVAFAFRSGMFNI 63 LVGAIVMLV GYDPI YSAL+ +FG+P GE +R M PL+ GL+VAFAFR+G+FNI Sbjct: 2 LVGAIVMLVSGYDPIVGYSALWTGMFGSPSAIGETLRTMIPLILAGLSVAFAFRTGLFNI 61 Query: 64 GADGQVLIGMTAASVVGIKFAGTLPSFVLVPLAVIIAGVCGGLWAGIAGYLKAKRGINEV 123 G +GQ+L+G AA G +A +LP+F+ +PL++++A + GGLW I GYLK K +NEV Sbjct: 62 GVEGQLLVGWLAAVWFG--YAVSLPAFLHIPLSILVAAIVGGLWGFIPGYLKGKFKVNEV 119 Query: 124 ITTIMLNWVALFLSNYIVRSFLLLQGQNRSEDI--PASLSMTFLNSVFDNARLHWGTVIA 181 I TIM+N++AL+++ I++ F L +G +++ DI ASL+ +L S+ D +RLHWG V+A Sbjct: 120 IVTIMMNYIALYVTYDIIKRF-LHEGNDKTYDIQPSASLASDWLASLTDGSRLHWGIVVA 178 Query: 182 LAAAVFFYVYLWKTKQGYEMRAVGLNPHAAEYAGMNVGRNVMKAMFISXXXXXXXXXXXX 241 + + + L +T GYE+++VG N A++YAGM V RNV+ +M I+ Sbjct: 179 ILVTILMWFLLDRTTLGYELKSVGFNQQASQYAGMKVSRNVVLSMTIAGAFAGIGGAMEG 238 Query: 242 XXXXHYQSVFAASPGYGFDGIAVALLGLTHPLGVILAAILYGTLTYGSAGMSFGADVPPE 301 + A G GFDGIAVALLG +P G+ILAA+L+G L + M+F ADVP E Sbjct: 239 LGTFQSMTAMATFTGIGFDGIAVALLGGNNPFGIILAALLFGGLKSAAPQMNFEADVPSE 298 Query: 302 LXXXXXXXXXXXXAAQGIVRWVL 324 L A I+RW L Sbjct: 299 LINVIIACIIFFVACSYILRWTL 321 >C3BCC4.1 C3BCC4_BACMY Branched-chain amino acid transport system, permease Length = 329 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/323 (45%), Positives = 206/323 (63%), Gaps = 5/323 (1%) Query: 4 LVGAIVMLVGGYDPIAAYSALFKRVFGTPYDFGEAIREMTPLMFTGLAVAFAFRSGMFNI 63 LVGAIVMLV GYDPI YSAL+ +FG+P GE +R M PL+ GL+VAFAFR+G+FNI Sbjct: 2 LVGAIVMLVSGYDPIVGYSALWTGMFGSPSAIGETLRTMIPLILAGLSVAFAFRTGLFNI 61 Query: 64 GADGQVLIGMTAASVVGIKFAGTLPSFVLVPLAVIIAGVCGGLWAGIAGYLKAKRGINEV 123 G +GQ+L+G AA G +A +LP+F+ +PL++++A + GGLW I GYLK K +NEV Sbjct: 62 GVEGQLLVGWLAAVWFG--YAVSLPAFLHIPLSILVAAIVGGLWGFIPGYLKGKFKVNEV 119 Query: 124 ITTIMLNWVALFLSNYIVRSFLLLQGQNRSEDI--PASLSMTFLNSVFDNARLHWGTVIA 181 I TIM+N++AL+++ I++ F L +G +++ DI ASL+ +L S+ D +RLHWG V+A Sbjct: 120 IVTIMMNYIALYVTYDIIKRF-LHEGNDKTYDIQPSASLASDWLASLTDGSRLHWGIVVA 178 Query: 182 LAAAVFFYVYLWKTKQGYEMRAVGLNPHAAEYAGMNVGRNVMKAMFISXXXXXXXXXXXX 241 + + + L +T GYE+++VG N A++YAGM V RNV+ +M I+ Sbjct: 179 ILVTILMWFLLDRTTLGYELKSVGFNQQASQYAGMKVSRNVVLSMTIAGAFAGIGGAMEG 238 Query: 242 XXXXHYQSVFAASPGYGFDGIAVALLGLTHPLGVILAAILYGTLTYGSAGMSFGADVPPE 301 + A G GFDGIAVALLG +P G+ILAA+L+G L + M+F ADVP E Sbjct: 239 LGTFQSMTAMATFTGIGFDGIAVALLGGNNPFGIILAALLFGGLKSAAPQMNFEADVPSE 298 Query: 302 LXXXXXXXXXXXXAAQGIVRWVL 324 L A I+RW L Sbjct: 299 LINVIIACIIFFVACSYILRWTL 321 >C3AP61.1 C3AP61_BACMY Branched-chain amino acid transport system, permease Length = 329 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/323 (45%), Positives = 206/323 (63%), Gaps = 5/323 (1%) Query: 4 LVGAIVMLVGGYDPIAAYSALFKRVFGTPYDFGEAIREMTPLMFTGLAVAFAFRSGMFNI 63 LVGAIVMLV GYDPI YSAL+ +FG+P GE +R M PL+ GL+VAFAFR+G+FNI Sbjct: 2 LVGAIVMLVSGYDPIVGYSALWTGMFGSPSAIGETLRTMIPLILAGLSVAFAFRTGLFNI 61 Query: 64 GADGQVLIGMTAASVVGIKFAGTLPSFVLVPLAVIIAGVCGGLWAGIAGYLKAKRGINEV 123 G +GQ+L+G AA G +A +LP+F+ +PL++++A + GGLW I GYLK K +NEV Sbjct: 62 GVEGQLLVGWLAAVWFG--YAVSLPAFLHIPLSILVAAIVGGLWGFIPGYLKGKFKVNEV 119 Query: 124 ITTIMLNWVALFLSNYIVRSFLLLQGQNRSEDI--PASLSMTFLNSVFDNARLHWGTVIA 181 I TIM+N++AL+++ I++ F L +G +++ DI ASL+ +L S+ D +RLHWG V+A Sbjct: 120 IVTIMMNYIALYVTYDIIKRF-LHEGNDKTYDIQPSASLASDWLASLTDGSRLHWGIVVA 178 Query: 182 LAAAVFFYVYLWKTKQGYEMRAVGLNPHAAEYAGMNVGRNVMKAMFISXXXXXXXXXXXX 241 + + + L +T GYE+++VG N A++YAGM V RNV+ +M I+ Sbjct: 179 ILVTILMWFLLDRTTLGYELKSVGFNQQASQYAGMKVSRNVVLSMTIAGAFAGIGGAMEG 238 Query: 242 XXXXHYQSVFAASPGYGFDGIAVALLGLTHPLGVILAAILYGTLTYGSAGMSFGADVPPE 301 + A G GFDGIAVALLG +P G+ILAA+L+G L + M+F ADVP E Sbjct: 239 LGTFQSMTAMATFTGIGFDGIAVALLGGNNPFGIILAALLFGGLKSAAPQMNFEADVPSE 298 Query: 302 LXXXXXXXXXXXXAAQGIVRWVL 324 L A I+RW L Sbjct: 299 LINVIIACIIFFVACSYILRWTL 321 >B7GG53.1 B7GG53_ANOFW ABC-type uncharacterized transport system, permease component Length = 348 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 160/335 (47%), Positives = 204/335 (60%), Gaps = 7/335 (2%) Query: 1 MGFLVGAIVMLVGGYDPIAAYSALFKRVFGTPYDFGEAIREMTPLMFTGLAVAFAFRSGM 60 +G + GAIVM+V GYDPIA YSAL FG Y GE IR++TP + GLAVAFAFR+G+ Sbjct: 18 LGIIAGAIVMIVSGYDPIAGYSALLYGAFGDRYYIGETIRQVTPYILAGLAVAFAFRTGL 77 Query: 61 FNIGADGQVLIGMTAASVVGIKFAGTLPSFVLVPLAVIIAGVCGGLWAGIAGYLKAKRGI 120 FNIG +GQ+++G AA VG+ F LP + +PLA+ A G LW I G+LKA+ + Sbjct: 78 FNIGVEGQLIVGWLAAVWVGVAF--ELPKVIHLPLAIAAAAFAGALWGFIPGFLKARFRV 135 Query: 121 NEVITTIMLNWVALFLSNYIVRSFLLLQGQNRSEDIP-ASLSMTFLNSVFDNARLHWGTV 179 +EVI TIM+N++AL++SN I+RS L QG + P ASL FL S+ D + LH+G + Sbjct: 136 HEVIVTIMMNYIALYVSNAIIRSVLSDQGFKSEKIHPTASLRSEFLQSLTDYSTLHYGII 195 Query: 180 IALAAAVFFYVYLWKTKQGYEMRAVGLNPHAAEYAGMNVGRNVMKAMFISXXXXXXXXXX 239 I+L AAV + L KT GYE+RAVG N HA+ YAGMNV RN++ AM IS Sbjct: 196 ISLIAAVVMWFLLEKTTTGYELRAVGFNQHASHYAGMNVNRNIILAMVISGAFAGIAGAM 255 Query: 240 XXXXXXHYQSVFAASPGYGFDGIAVALLGLTHPLGVILAAILYGTLTYGSAGMSFGADVP 299 SV A G GFDGIAVALLG + G+ILAAIL+G L G+ M ADVP Sbjct: 256 EGLGTFENVSVKAGFTGVGFDGIAVALLGGNNAFGIILAAILFGALKVGALEMPSAADVP 315 Query: 300 PELXXXXXXXXXXXXAAQGIVRWVLKPFYFKRKKE 334 EL A+ ++R VL F KKE Sbjct: 316 TELVDIVIALIIFFVASSYLIRLVLTRF----KKE 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,869,504,179 Number of extensions: 71878592 Number of successful extensions: 274686 Number of sequences better than 1.0e-05: 1492 Number of HSP's gapped: 271683 Number of HSP's successfully gapped: 1501 Length of query: 337 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 201 Effective length of database: 1,779,438,163 Effective search space: 357667070763 Effective search space used: 357667070763 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)