BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0057.p (350 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIE9.1 B1DIE9_9BACL Basic membrane lipoprotein 411 e-113 C0ZF29.1 C0ZF29_BREBN Probable ABC transporter substrate binding... 383 e-104 C3DNJ4.1 C3DNJ4_BACTS Putative uncharacterized protein 337 1e-90 C3IMT8.1 C3IMT8_BACTU Putative uncharacterized protein 337 1e-90 B7ITP3.1 B7ITP3_BACC2 Lipoprotein, Bmp family 336 2e-90 >B1DIE9.1 B1DIE9_9BACL Basic membrane lipoprotein Length = 355 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/304 (68%), Positives = 246/304 (80%), Gaps = 3/304 (0%) Query: 47 TDVKVGMVTDVGGVNDKSFNQSAWEALQALQKETGIDIKYLQSKSNADYEPNLNQFVKGG 106 + +K+GM TDVGGVNDKSFNQSAWEAL+ + +TG + KYL+SK +AD EPNL FV Sbjct: 51 SKLKIGMATDVGGVNDKSFNQSAWEALKKVTADTGAETKYLESKGDADMEPNLKAFVSEK 110 Query: 107 YNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVGVVAGLT 166 Y+LTWGIGF DA+ KVATENPN+ A+ID+ VD PNVESV+F+ENEGSFLVGVVAGL Sbjct: 111 YDLTWGIGFLFTDAMTKVATENPNSKFALIDAEVDLPNVESVSFAENEGSFLVGVVAGLM 170 Query: 167 TKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKA--TVKITYAGAYDKPDIGKSLAATL 224 TKTNK+GF+GGME PVIK+FE GFKAGVEAVNP+A ++KI Y G + KPD+GK AAT+ Sbjct: 171 TKTNKIGFVGGMEIPVIKKFEAGFKAGVEAVNPEAAKSMKINYVGDFSKPDLGKQAAATM 230 Query: 225 YNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLEFGDDVTLTSMIKRV 284 Y+ G DIIF A+GA+GNGVFNEAKSR A G VWVIGVDKDQSLEFGD +TLTSM+K V Sbjct: 231 YDAGVDIIFHASGASGNGVFNEAKSRKDA-GKDVWVIGVDKDQSLEFGDAITLTSMMKGV 289 Query: 285 DEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSKANVSADILAKVDEYTKQIIDGT 344 + AV KVS +I+GT++GG LGLKDNGVGLPETS NV AD+LAKV+EY ++II G Sbjct: 290 EAAVYKVSTDLINGTWQGGQVVTLGLKDNGVGLPETSTKNVPADVLAKVEEYKQKIISGE 349 Query: 345 IKVP 348 I VP Sbjct: 350 ITVP 353 >C0ZF29.1 C0ZF29_BREBN Probable ABC transporter substrate binding protein Length = 348 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/303 (65%), Positives = 237/303 (78%), Gaps = 5/303 (1%) Query: 49 VKVGMVTDVGGVNDKSFNQSAWEALQALQKETGI---DIKYLQSKSNADYEPNLNQFVKG 105 +KVGMVTDVGGVND SFNQSAWE LQ LQ E + ++ YLQSKS+ADY PNL QFVK Sbjct: 46 IKVGMVTDVGGVNDNSFNQSAWEGLQKLQTEMNLPKENVNYLQSKSDADYVPNLTQFVKD 105 Query: 106 GYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVGVVAGL 165 G++LTWGIGF +GD +KKVA EN NA LAIID+ VDAPNV SV F E+EGSFL GVVA Sbjct: 106 GWDLTWGIGFLMGDHLKKVANENKNAKLAIIDAEVDAPNVASVLFKEHEGSFLAGVVAAK 165 Query: 166 TTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSLAATLY 225 TKT KVGF+GG++ PVIKRF++GF+AGV+AV+P V Y GA+DKPD+GKS A+++Y Sbjct: 166 MTKTKKVGFVGGVDIPVIKRFDLGFEAGVKAVDPSIQVVKVYTGAFDKPDMGKSTASSMY 225 Query: 226 NDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLEFGDDVTLTSMIKRVD 285 G DIIF A+G TG+GVFNEAK R KA G VWVIGVDKDQSL FGD+VTLTSM+KRVD Sbjct: 226 GQGVDIIFHASGGTGDGVFNEAKDR-KAKGENVWVIGVDKDQSLTFGDEVTLTSMVKRVD 284 Query: 286 EAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSKANVSADILAKVDEYTKQIIDGTI 345 EAV +VS+++ +G FKGG LGL +NGVGL +TS NV D+L V+EY ++I+ G I Sbjct: 285 EAVIRVSKELSEGKFKGGVQW-LGLAENGVGLADTSTKNVPEDVLKLVEEYKQKIVKGEI 343 Query: 346 KVP 348 VP Sbjct: 344 TVP 346 >C3DNJ4.1 C3DNJ4_BACTS Putative uncharacterized protein Length = 382 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 173/309 (55%), Positives = 228/309 (73%), Gaps = 8/309 (2%) Query: 48 DVKVGMVTDVGGVNDKSFNQSAWEALQALQKETGI----DIKYLQSKSNADYEPNLNQFV 103 D KVGMVTDVGGV+DKSFNQS+WE L+ K+ G+ + +YLQS+ ADY PNL +F Sbjct: 61 DFKVGMVTDVGGVDDKSFNQSSWEGLKKFGKDNGLKEKTNYRYLQSEKEADYIPNLKKFS 120 Query: 104 KGGYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVGVVA 163 K Y+L++GIG+ L AIK+VA E+P AI+D+VVDAPNV S+TF ++EGSFLVG VA Sbjct: 121 KDKYDLSFGIGYKLEGAIKEVAKESPKQQFAIVDTVVDAPNVTSITFKDHEGSFLVGAVA 180 Query: 164 GLTTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSLAAT 223 ++TK+NKVGF+GGM+S +I +FE GFKAG +AVNP + YA A+DKP+ G LA+ Sbjct: 181 AMSTKSNKVGFVGGMKSDLISKFENGFKAGAKAVNPNIEIVSEYAEAFDKPEKGTVLASA 240 Query: 224 LYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLE-FGDDVTLTSMIK 282 +Y G D+I+ AAG TGNGVF EAK+R K G VWVIGVD+DQ+ E ++VTLTSM+K Sbjct: 241 MYGQGVDVIYHAAGGTGNGVFTEAKNRKKK-GENVWVIGVDRDQNQEGMPENVTLTSMVK 299 Query: 283 RVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSK--ANVSADILAKVDEYTKQI 340 RVD AV+KV+Q+ DG KGG GLKD+G+G+ +T+ V+ +IL KV+E+ K+I Sbjct: 300 RVDIAVEKVAQEAKDGKLKGGKVEAFGLKDDGIGISKTTDNVKKVNPEILTKVEEFEKKI 359 Query: 341 IDGTIKVPS 349 DG IKVP+ Sbjct: 360 TDGEIKVPA 368 >C3IMT8.1 C3IMT8_BACTU Putative uncharacterized protein Length = 382 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 173/309 (55%), Positives = 228/309 (73%), Gaps = 8/309 (2%) Query: 48 DVKVGMVTDVGGVNDKSFNQSAWEALQALQKETGI----DIKYLQSKSNADYEPNLNQFV 103 D KVGMVTDVGGV+DKSFNQS+WE L+ K+ G+ + +YLQS+ ADY PNL +F Sbjct: 61 DFKVGMVTDVGGVDDKSFNQSSWEGLKKFGKDNGLKEKTNYRYLQSEKEADYIPNLKKFS 120 Query: 104 KGGYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVGVVA 163 K Y+L++GIG+ L AIK+VA E+P AI+D+VVDAPNV S+TF ++EGSFLVG VA Sbjct: 121 KDKYDLSFGIGYKLEGAIKEVAKESPKQQFAIVDTVVDAPNVTSITFKDHEGSFLVGAVA 180 Query: 164 GLTTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSLAAT 223 ++TK+NKVGF+GGM+S +I +FE GFKAG +AVNP + YA A+DKP+ G LA+ Sbjct: 181 AMSTKSNKVGFVGGMKSDLISKFENGFKAGAKAVNPNIEIVSEYAEAFDKPEKGTVLASA 240 Query: 224 LYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLE-FGDDVTLTSMIK 282 +Y G D+I+ AAG TGNGVF EAK+R K G VWVIGVD+DQ+ E ++VTLTSM+K Sbjct: 241 MYGQGVDVIYHAAGGTGNGVFTEAKNRKKK-GENVWVIGVDRDQNQEGMPENVTLTSMVK 299 Query: 283 RVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSK--ANVSADILAKVDEYTKQI 340 RVD AV+KV+Q+ DG KGG GLKD+G+G+ +T+ V+ +IL KV+E+ K+I Sbjct: 300 RVDIAVEKVAQEAKDGKLKGGKVEAFGLKDDGIGISKTTDNVKKVNPEILTKVEEFEKKI 359 Query: 341 IDGTIKVPS 349 DG IKVP+ Sbjct: 360 TDGEIKVPA 368 >B7ITP3.1 B7ITP3_BACC2 Lipoprotein, Bmp family Length = 358 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 173/309 (55%), Positives = 228/309 (73%), Gaps = 8/309 (2%) Query: 48 DVKVGMVTDVGGVNDKSFNQSAWEALQALQKETGI----DIKYLQSKSNADYEPNLNQFV 103 D KVGMVTDVGGV+DKSFNQS+WE L+ K+ G+ + +YLQS+ ADY PNL +F Sbjct: 37 DFKVGMVTDVGGVDDKSFNQSSWEGLKKFGKDNGLKEKTNYRYLQSEKEADYIPNLKKFS 96 Query: 104 KGGYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVGVVA 163 K Y+L++GIG+ L AIK+VA E+P AI+D+VVDAPNV S+TF ++EGSFLVG VA Sbjct: 97 KDKYDLSFGIGYKLEGAIKEVAKESPKQQFAIVDTVVDAPNVTSITFKDHEGSFLVGAVA 156 Query: 164 GLTTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSLAAT 223 ++TK+NKVGF+GGM+S +I +FE GFKAG +AVNP + YA A+DKP+ G LA+ Sbjct: 157 AMSTKSNKVGFVGGMKSDLISKFENGFKAGAKAVNPNIEIVSEYAEAFDKPEKGTVLASA 216 Query: 224 LYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLE-FGDDVTLTSMIK 282 +Y G D+I+ AAG TGNGVF EAK+R K G VWVIGVD+DQ+ E ++VTLTSM+K Sbjct: 217 MYGQGVDVIYHAAGGTGNGVFTEAKNRKKK-GENVWVIGVDRDQNQEGMPENVTLTSMVK 275 Query: 283 RVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSK--ANVSADILAKVDEYTKQI 340 RVD AV+KV+Q+ DG KGG GLKD+G+G+ +T+ V+ +IL KV+E+ K+I Sbjct: 276 RVDIAVEKVAQEAKDGKLKGGKVEAFGLKDDGIGISKTTDNVKKVNPEILTKVEEFEKKI 335 Query: 341 IDGTIKVPS 349 DG IKVP+ Sbjct: 336 TDGEIKVPA 344 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,898,930,621 Number of extensions: 81035404 Number of successful extensions: 178463 Number of sequences better than 1.0e-05: 1117 Number of HSP's gapped: 175397 Number of HSP's successfully gapped: 1124 Length of query: 350 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 214 Effective length of database: 1,779,438,163 Effective search space: 380799766882 Effective search space used: 380799766882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)