BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0055.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB17.1 B3KB17_9BACI 50S ribosomal protein L20                       217   3e-55
B1DL61.1 B1DL61_9BACL 50S ribosomal protein L20                       197   3e-49
C0Z9B6.1 RL20_BREBN 50S ribosomal protein L20                         194   2e-48
B7GGV3.1 RL20_ANOFW 50S ribosomal protein L20                         186   4e-46
C1PS53.1 C1PS53_ALIAC LSU ribosomal protein L20P                      183   5e-45

>B3KB17.1 B3KB17_9BACI 50S ribosomal protein L20
          Length = 119

 Score =  217 bits (552), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/119 (89%), Positives = 115/119 (96%)

Query: 1   MARVKGGFVVRRRHKKVLKLARGYFGSKHRIFKTANEQVMKSMLYAYRDRRQTKRNFRRL 60
           MARVKGGFVVRRRHKKVLKLA+GYFGSKHRIFKTANEQVMKS++YAYRDRR TKRNFR+L
Sbjct: 1   MARVKGGFVVRRRHKKVLKLAKGYFGSKHRIFKTANEQVMKSLVYAYRDRRNTKRNFRKL 60

Query: 61  WIVRINAAARLNGLSYSKLVFGLKLAGVEVNRKMLADLAVNDLNAFNSLAVVAKEKINA 119
           WIVRINAAAR NGLSYSKL+ GLKLAGV++NRKMLADLAVNDLNAFNSLA VAKEK+NA
Sbjct: 61  WIVRINAAARQNGLSYSKLMHGLKLAGVDINRKMLADLAVNDLNAFNSLATVAKEKVNA 119


>B1DL61.1 B1DL61_9BACL 50S ribosomal protein L20
          Length = 119

 Score =  197 bits (501), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 109/119 (91%)

Query: 1   MARVKGGFVVRRRHKKVLKLARGYFGSKHRIFKTANEQVMKSMLYAYRDRRQTKRNFRRL 60
           MARVKGGFV  RR K++LKLA+GYFGSKHR+FKTA EQV KS+LYAYRDRRQ KR FRRL
Sbjct: 1   MARVKGGFVRARRRKRILKLAKGYFGSKHRLFKTAKEQVGKSLLYAYRDRRQNKREFRRL 60

Query: 61  WIVRINAAARLNGLSYSKLVFGLKLAGVEVNRKMLADLAVNDLNAFNSLAVVAKEKINA 119
           WIVRINAAAR NGLSY+K ++GLKLAG+EVNRKMLADLAVND+N+FNSLA VAKEKINA
Sbjct: 61  WIVRINAAARQNGLSYNKFMYGLKLAGIEVNRKMLADLAVNDINSFNSLAGVAKEKINA 119


>C0Z9B6.1 RL20_BREBN 50S ribosomal protein L20
          Length = 119

 Score =  194 bits (493), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 106/119 (89%)

Query: 1   MARVKGGFVVRRRHKKVLKLARGYFGSKHRIFKTANEQVMKSMLYAYRDRRQTKRNFRRL 60
           M RVKGG V RRRHKK+LKLA+GYFGSKHR+FK+AN QVMKS+LYAYRDRRQ KR+FR+L
Sbjct: 1   MPRVKGGIVTRRRHKKILKLAKGYFGSKHRLFKSANAQVMKSLLYAYRDRRQKKRDFRKL 60

Query: 61  WIVRINAAARLNGLSYSKLVFGLKLAGVEVNRKMLADLAVNDLNAFNSLAVVAKEKINA 119
           WI RINA AR+NGLSYS+L+ GLK+AG+EVNRKMLADLAVND  AFN LA VAK K+NA
Sbjct: 61  WITRINAQARMNGLSYSRLMHGLKVAGIEVNRKMLADLAVNDKAAFNELATVAKSKLNA 119


>B7GGV3.1 RL20_ANOFW 50S ribosomal protein L20
          Length = 119

 Score =  186 bits (473), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 104/118 (88%)

Query: 1   MARVKGGFVVRRRHKKVLKLARGYFGSKHRIFKTANEQVMKSMLYAYRDRRQTKRNFRRL 60
           M RVKGG V RRR KK+LKLA+GYFGSKHR++K AN+QVMKS++YAYRDRRQ KR+FR+L
Sbjct: 1   MPRVKGGTVTRRRRKKILKLAKGYFGSKHRLYKVANQQVMKSLMYAYRDRRQRKRDFRKL 60

Query: 61  WIVRINAAARLNGLSYSKLVFGLKLAGVEVNRKMLADLAVNDLNAFNSLAVVAKEKIN 118
           WI RINAAAR+NGLSYS+L+ GLKLAG+EVNRKMLADLAVND  AF  LA +AKE +N
Sbjct: 61  WITRINAAARMNGLSYSRLMHGLKLAGIEVNRKMLADLAVNDAAAFTQLANIAKENLN 118


>C1PS53.1 C1PS53_ALIAC LSU ribosomal protein L20P
          Length = 121

 Score =  183 bits (464), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 103/119 (86%)

Query: 1   MARVKGGFVVRRRHKKVLKLARGYFGSKHRIFKTANEQVMKSMLYAYRDRRQTKRNFRRL 60
           MARVKGG V RRRHKK+LKLARGYFGSKH +++TA +QVMKS++YAYRDR+Q KR+FRRL
Sbjct: 1   MARVKGGVVTRRRHKKILKLARGYFGSKHTLYRTAKQQVMKSLMYAYRDRKQRKRDFRRL 60

Query: 61  WIVRINAAARLNGLSYSKLVFGLKLAGVEVNRKMLADLAVNDLNAFNSLAVVAKEKINA 119
           WI RINAA R +GLSYS+ + GLKLAGVEVNRKMLADLAV D  AF+ L  VA+E++NA
Sbjct: 61  WIQRINAAVRPHGLSYSRFMHGLKLAGVEVNRKMLADLAVTDKEAFSQLVTVARERLNA 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 570,223,566
Number of extensions: 17475511
Number of successful extensions: 58071
Number of sequences better than 1.0e-05: 1813
Number of HSP's gapped: 57861
Number of HSP's successfully gapped: 1813
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)