BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0054.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB16.1 B3KB16_9BACI 50S ribosomal protein L35                       112   9e-24
B1DL62.1 B1DL62_9BACL 50S ribosomal protein L35                       101   2e-20
B4VA69.1 B4VA69_9ACTO 50S ribosomal protein L35                        67   6e-10
B5I522.1 B5I522_9ACTO 50S ribosomal protein L35                        67   6e-10
O88059.1 RL35_STRCO 50S ribosomal protein L35                          67   6e-10

>B3KB16.1 B3KB16_9BACI 50S ribosomal protein L35
          Length = 66

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 61/63 (96%)

Query: 1  MKTHSSLKGRFKITGSGKVLRYKAHKNHLLSHKSKRAKRVLNGNPVMAPGDVRRLKQGLA 60
          MKTHSSLKGRFKITG+GKV RYKA+KNHLLSHKSKRAKRVL+ +PVMAPGDV+RLKQGLA
Sbjct: 4  MKTHSSLKGRFKITGTGKVKRYKAYKNHLLSHKSKRAKRVLSNSPVMAPGDVKRLKQGLA 63

Query: 61 NLK 63
          NLK
Sbjct: 64 NLK 66


>B1DL62.1 B1DL62_9BACL 50S ribosomal protein L35
          Length = 66

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query: 1  MKTHSSLKGRFKITGSGKVLRYKAHKNHLLSHKSKRAKRVLNGNPVMAPGDVRRLKQGLA 60
          MKTHSSLK RFKITG+GKV RYKA++NHLLSHKS R KRVL G P+MA GDVRR++QGLA
Sbjct: 4  MKTHSSLKDRFKITGTGKVKRYKAYRNHLLSHKSGRQKRVLAGQPLMAAGDVRRIQQGLA 63

Query: 61 NLK 63
          NLK
Sbjct: 64 NLK 66


>B4VA69.1 B4VA69_9ACTO 50S ribosomal protein L35
          Length = 64

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 2  KTHSSLKGRFKITGSGKVLRYKAHKNHLLSHKSKRAKRVLNGNPVMAPGDVRRLKQ 57
          KTHS  K RFK+TGSGK+LR +A K HLL HKS +  R L GN  MAPGD  ++K+
Sbjct: 5  KTHSGTKKRFKVTGSGKILRERAGKRHLLEHKSSKLTRRLTGNAEMAPGDAAKIKK 60


>B5I522.1 B5I522_9ACTO 50S ribosomal protein L35
          Length = 64

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 39/56 (69%)

Query: 2  KTHSSLKGRFKITGSGKVLRYKAHKNHLLSHKSKRAKRVLNGNPVMAPGDVRRLKQ 57
          K+HS    RFKITGSGKVLR +A K HLL HKS R  R L GN  MAPGD  ++K+
Sbjct: 5  KSHSGASKRFKITGSGKVLRERAGKRHLLEHKSSRVTRRLTGNAEMAPGDAAKIKK 60


>O88059.1 RL35_STRCO 50S ribosomal protein L35
          Length = 64

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 39/56 (69%)

Query: 2  KTHSSLKGRFKITGSGKVLRYKAHKNHLLSHKSKRAKRVLNGNPVMAPGDVRRLKQ 57
          K+HS    RFKITGSGKVLR +A K HLL HKS R  R L GN  MAPGD  ++K+
Sbjct: 5  KSHSGASKRFKITGSGKVLRERAGKRHLLEHKSSRVTRRLTGNAEMAPGDAAKIKK 60


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 362,729,755
Number of extensions: 10564554
Number of successful extensions: 27280
Number of sequences better than 1.0e-05: 172
Number of HSP's gapped: 27294
Number of HSP's successfully gapped: 172
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)