BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0053.p (165 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB15.1 B3KB15_9BACI Translation initiation factor IF-3 315 1e-84 B1DL63.1 B1DL63_9BACL Translation initiation factor IF-3 289 4e-77 C0Z9B4.1 C0Z9B4_BREBN Translation initiation factor IF-3 241 1e-62 A7GTM2.1 A7GTM2_BACCN Translation initiation factor IF-3 225 1e-57 C3I708.1 C3I708_BACTU Translation initiation factor IF-3 225 1e-57 >B3KB15.1 B3KB15_9BACI Translation initiation factor IF-3 Length = 164 Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 153/164 (93%), Positives = 159/164 (96%) Query: 1 MINDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKF 60 MINDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKF Sbjct: 1 MINDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKF 60 Query: 61 RYETQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGR 120 RYE QKKEKEARKNQKIVDIKEVWFRANIEEHDYQTK RNV+KFL +GDKVKCSVRFRGR Sbjct: 61 RYEQQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKLRNVVKFLKDGDKVKCSVRFRGR 120 Query: 121 EITHASIGQKILERVKSEVEDISVVERQPKLEGRSMIMILAPKA 164 EITHA+IGQKILERVK+EV D+ V+ERQPKLEGRSMIMILAPKA Sbjct: 121 EITHANIGQKILERVKTEVADLCVIERQPKLEGRSMIMILAPKA 164 >B1DL63.1 B1DL63_9BACL Translation initiation factor IF-3 Length = 193 Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 139/163 (85%), Positives = 152/163 (93%) Query: 2 INDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFR 61 INDEIRA+EVRLVGA+GEQIGIK IR+A+QMAIDL+LDLVNVAP AKPPVCRIMDYGKFR Sbjct: 29 INDEIRAREVRLVGADGEQIGIKSIRDAMQMAIDLSLDLVNVAPTAKPPVCRIMDYGKFR 88 Query: 62 YETQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGRE 121 YE QKKEKEARKNQKIVD+KEVWFRANI+EHDYQTKFRNV+KFLGEGDKVK SVRFRGRE Sbjct: 89 YEQQKKEKEARKNQKIVDLKEVWFRANIDEHDYQTKFRNVVKFLGEGDKVKASVRFRGRE 148 Query: 122 ITHASIGQKILERVKSEVEDISVVERQPKLEGRSMIMILAPKA 164 I HA+IGQKIL+R+ EV +I VER PKLEGRSMIMILAPK+ Sbjct: 149 IAHAAIGQKILDRLAQEVAEICSVERAPKLEGRSMIMILAPKS 191 >C0Z9B4.1 C0Z9B4_BREBN Translation initiation factor IF-3 Length = 173 Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/165 (67%), Positives = 141/165 (85%) Query: 1 MINDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKF 60 +IN+ IRA+EVRL+GA+G Q+G+ P REAL++A + LDLVNVAP AKPPVCRIMDYGKF Sbjct: 7 LINEAIRAREVRLIGADGSQLGVVPFREALRIAQEAELDLVNVAPTAKPPVCRIMDYGKF 66 Query: 61 RYETQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGR 120 +YE KKEKEARKNQKI+++KEV F +NIEEHD+QTK RNV KFL + KVKC++RFRGR Sbjct: 67 KYEQAKKEKEARKNQKIIELKEVRFSSNIEEHDFQTKLRNVRKFLEDQHKVKCTIRFRGR 126 Query: 121 EITHASIGQKILERVKSEVEDISVVERQPKLEGRSMIMILAPKAQ 165 EITH+ IG ++ERV ++ ED++ ER+PK+EGRSMIMILAPKA+ Sbjct: 127 EITHSEIGLGVMERVAAQCEDLAAPERKPKIEGRSMIMILAPKAE 171 >A7GTM2.1 A7GTM2_BACCN Translation initiation factor IF-3 Length = 195 Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 104/163 (63%), Positives = 130/163 (79%) Query: 1 MINDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKF 60 MIN++IRA+EVRLVGA G+Q+GIK +AL MA +LNLDLV VAP AKPPVCRIMDYGKF Sbjct: 30 MINEQIRAREVRLVGANGDQLGIKSRNDALDMAANLNLDLVLVAPNAKPPVCRIMDYGKF 89 Query: 61 RYETQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGR 120 R+E QKKEKE RKNQK++ +KEV I+EHD+ TK RN +KFLG+GDKVK S+RF+GR Sbjct: 90 RFEQQKKEKEQRKNQKVISMKEVRLSPTIDEHDFNTKLRNALKFLGKGDKVKASIRFKGR 149 Query: 121 EITHASIGQKILERVKSEVEDISVVERQPKLEGRSMIMILAPK 163 ITH IGQ++L+R ++ +E +PK+EGRSM +ILAPK Sbjct: 150 AITHKEIGQRVLDRFAEACAEVGTIESKPKMEGRSMFLILAPK 192 >C3I708.1 C3I708_BACTU Translation initiation factor IF-3 Length = 167 Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 104/163 (63%), Positives = 130/163 (79%) Query: 1 MINDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKF 60 MIN++IRA+EVRLVGA G+Q+GIK +AL +A +LNLDLV VAP AKPPVCRIMDYGKF Sbjct: 2 MINEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKF 61 Query: 61 RYETQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGR 120 R+E QKKEKE RKNQK++ +KEV I+EHD+ TK RN IKFL +GDKVK S+RF+GR Sbjct: 62 RFEQQKKEKEQRKNQKVISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIRFKGR 121 Query: 121 EITHASIGQKILERVKSEVEDISVVERQPKLEGRSMIMILAPK 163 ITH IGQ++L+R ++S VE +PK+EGRSM ++LAPK Sbjct: 122 AITHKEIGQRVLDRFSEACAEVSTVESKPKMEGRSMFLVLAPK 164 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 904,179,280 Number of extensions: 34055333 Number of successful extensions: 95871 Number of sequences better than 1.0e-05: 1539 Number of HSP's gapped: 95465 Number of HSP's successfully gapped: 1539 Length of query: 165 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 40 Effective length of database: 1,883,069,328 Effective search space: 75322773120 Effective search space used: 75322773120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)