BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0051.p (192 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q62RB9.1 Q62RB9_BACLD Ribosomal protein S2 149 2e-34 B7GK43.1 B7GK43_ANOFW Membrane-associated phospholipid phosphatase 133 8e-30 C2X3K4.1 C2X3K4_BACCE PAP2 125 2e-27 C3ES10.1 C3ES10_BACTK PAP2 124 4e-27 C2XI55.1 C2XI55_BACCE PAP2 124 4e-27 >Q62RB9.1 Q62RB9_BACLD Ribosomal protein S2 Length = 174 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/155 (48%), Positives = 95/155 (61%) Query: 18 MRHLFMKLHLLERRLFKWINGRLHNPFLNFWLFYLTHLGGATSAIGINLLIWALSPQPLR 77 M L + ++ E R+F +N H LN + THLGGA I L + +R Sbjct: 1 MNKLMVGIYNFECRIFLGMNRLFHQKTLNRYFRSSTHLGGAMCTISACLSLLLFGSGSVR 60 Query: 78 TVGLQALIALAISHLPVAIAKKLYPRVRPYLALPGTNTFHNPLKDHSFPSGHTTAIFAST 137 T G+ + +AL +SHL V + KKLYPR RPYL L T NPLKDHSFPSGHTTA+F+ Sbjct: 61 TAGMASALALLVSHLQVMLIKKLYPRKRPYLTLKETQVLQNPLKDHSFPSGHTTAVFSVI 120 Query: 138 VPYMVAFPVLTAILLPLACIVGFSRIYLGLHYPSD 172 P M+ FP+L +L+P+ VG SRIYLGLHYPSD Sbjct: 121 TPLMIFFPILALLLIPVGVSVGLSRIYLGLHYPSD 155 >B7GK43.1 B7GK43_ANOFW Membrane-associated phospholipid phosphatase Length = 174 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 78/150 (52%), Positives = 100/150 (66%), Gaps = 2/150 (1%) Query: 24 KLHLLERRLFKWINGRLHNPFLNFWLFYLTHLGGATSAI-GINLLIWALSPQPLRTVGLQ 82 K + E +LF IN +LN + +TH+GGAT +I + L IW L + R + Sbjct: 6 KWYEWECKLFYSINRYFDQKWLNTYFRSITHVGGATFSITSVMLAIWLLRDE-WRDTAIA 64 Query: 83 ALIALAISHLPVAIAKKLYPRVRPYLALPGTNTFHNPLKDHSFPSGHTTAIFASTVPYMV 142 + IALA+SH+PVA+ KK+YPR RPY++L T NPL DHSFPSGHTTAIF+ VP+++ Sbjct: 65 SAIALALSHIPVAMMKKIYPRKRPYISLYKTKVTKNPLTDHSFPSGHTTAIFSVIVPFLL 124 Query: 143 AFPVLTAILLPLACIVGFSRIYLGLHYPSD 172 P LT LLP+AC V SRIYLGLHYPSD Sbjct: 125 YAPSLTIWLLPIACSVAISRIYLGLHYPSD 154 >C2X3K4.1 C2X3K4_BACCE PAP2 Length = 177 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/148 (48%), Positives = 92/148 (62%) Query: 25 LHLLERRLFKWINGRLHNPFLNFWLFYLTHLGGATSAIGINLLIWALSPQPLRTVGLQAL 84 L+ +E +FK IN LN + +TH+GGAT +I + L + L + Sbjct: 6 LYKIECYIFKGINRYFDQKTLNIFFSNITHIGGATFSIALTLFFLIFAKGTLHQAAIATA 65 Query: 85 IALAISHLPVAIAKKLYPRVRPYLALPGTNTFHNPLKDHSFPSGHTTAIFASTVPYMVAF 144 I+LAISH+PV I K+ YPR RPYL + T +PLKDHSFPSGHTTA+F+ +P++ Sbjct: 66 ISLAISHIPVQILKRWYPRKRPYLTIQDTKYPVHPLKDHSFPSGHTTAVFSVFIPFICYN 125 Query: 145 PVLTAILLPLACIVGFSRIYLGLHYPSD 172 P L LLPLA VG SRIYLGLHYPSD Sbjct: 126 PSLLVFLLPLALCVGISRIYLGLHYPSD 153 >C3ES10.1 C3ES10_BACTK PAP2 Length = 177 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/148 (48%), Positives = 93/148 (62%) Query: 25 LHLLERRLFKWINGRLHNPFLNFWLFYLTHLGGATSAIGINLLIWALSPQPLRTVGLQAL 84 L+ +E +F+ IN LN + +TH+GGAT +IG+ L + L + Sbjct: 6 LYKIECYIFRGINRYFDQKTLNIFFSNITHIGGATFSIGLTLFFLIFAKGTLHQAAIATA 65 Query: 85 IALAISHLPVAIAKKLYPRVRPYLALPGTNTFHNPLKDHSFPSGHTTAIFASTVPYMVAF 144 I+LAISH+PV I K+ YPR RPYL + +PLKDHSFPSGHTTA+F+ +P++ Sbjct: 66 ISLAISHIPVQILKRWYPRKRPYLTIQDAKYPVHPLKDHSFPSGHTTAVFSVFIPFICYN 125 Query: 145 PVLTAILLPLACIVGFSRIYLGLHYPSD 172 P L A LLPLA VG SRIYLGLHYPSD Sbjct: 126 PSLLAFLLPLALCVGISRIYLGLHYPSD 153 >C2XI55.1 C2XI55_BACCE PAP2 Length = 177 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/148 (48%), Positives = 93/148 (62%) Query: 25 LHLLERRLFKWINGRLHNPFLNFWLFYLTHLGGATSAIGINLLIWALSPQPLRTVGLQAL 84 L+ +E +F+ IN LN + +TH+GGAT +IG+ L + L + Sbjct: 6 LYKIECYIFRGINRYFDQKTLNIFFSNITHIGGATFSIGLTLFFLIFAKGTLHQAAIATA 65 Query: 85 IALAISHLPVAIAKKLYPRVRPYLALPGTNTFHNPLKDHSFPSGHTTAIFASTVPYMVAF 144 I+LAISH+PV I K+ YPR RPYL + +PLKDHSFPSGHTTA+F+ +P++ Sbjct: 66 ISLAISHIPVQILKRWYPRKRPYLTIQDAKYPVHPLKDHSFPSGHTTAVFSVFIPFICYN 125 Query: 145 PVLTAILLPLACIVGFSRIYLGLHYPSD 172 P L A LLPLA VG SRIYLGLHYPSD Sbjct: 126 PSLLAFLLPLALCVGISRIYLGLHYPSD 153 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,082,827,779 Number of extensions: 43111978 Number of successful extensions: 128208 Number of sequences better than 1.0e-05: 466 Number of HSP's gapped: 128399 Number of HSP's successfully gapped: 466 Length of query: 192 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 64 Effective length of database: 1,854,806,283 Effective search space: 118707602112 Effective search space used: 118707602112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)